Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012895

Physical Location & Seq

Genomic Coordinates Reverse (-)

6945542 .. 6946841

Gene Structure 1300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1100000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTCAACTGGCCTGCCTCGGAAGCGCTTCTACCGAGAAAGAGCACACAGCAACCCTCTGAGTGACTCCCACTTTCCAGTACCTGTCTCCCCGCGTCACGTAGATTATTCTCTTCATTACCAGCAATACTTACCCTCATTTGATCAAGTTGATAGCTGTAAGAAGGTTCAGTTTGCAGATATCGGTTGTGGTTTTGGGGGGCTTCTGATAAGTCTGTCAACCCTTTTCCCCGAGACTTTGATGATCGGAATGGAGCTTAGGGATAAGGTGACAGAGTACGTGAAGGAAAGGATCTTGGCATTAAGGGTGACAAATCCGGGTCAATACCAAAATGTCTCAGTCCTTTCAAACATGTTTTTCCTGTTCCCGGATCCTCACTTCAAAGAGAAAAATCATCGGCGTAGAGTGATCAGTCCTTTCTTGCTGGACGAGTATGCTTATGTTCTAGAAGGCGGTGGGATCATATACACAATTGCGGATGTTGAGGAACTCGGAGACTGGATGAAGACTTGCTTGGAGAATCACCCCATGTTTGAAGCTCTCACCGACGAAGAGCTCAAAGCAGATCCAGTTACGAAGCTCTTGAGTTCTGAAACGGAGGAAGGACAGAAGGTTGACAGAAATGGGGGACAGACTTTCCGAGCGGTTTACAGACGCATTGCGCCATCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008176 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0036265 GO:0043170 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0106004 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_4

Protein Analysis

225

Amino Acids

25.7

Weight (kDa)

5.99

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_4	PF02390	55 - 214	1.1e-36	Putative methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24840
fragaria_vesca	FvH4_2g36340
malus_domestica	MD08G1121000.v1.1 MD15G1100000.v1.1
prunus_persica	Prupe.1G454800_v2.0.a1
pyrus_communis	pycom08g10110 pycom15g09200
rosa_chinensis	RchiOBHm_Chr6g0305541
rosa_laevigata	RLG00000010878
rosa_multiflora	Rmu_co8330221.1_g000001 Rmu_sc0000841.1_g000004
rosa_roxburghii	Rroxscaffold_7G00162600
rosa_rugosa	Rorug06G0341500
rosa_samantha	Rh6AG453500 Rh6BG448100 Rh6CG467300 Rh6DG453900
rosa_wichuraiana	Rw6G039520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	644
AccII	CGCG	1 cut(s)	94
AciI	CCGC	4 cut(s)	92, 453, 476, 644
AclWI	GGATC	5 cut(s)	299, 365, 378, 467, 560
AfaI	GTAC	2 cut(s)	81, 278
AfeI	AGCGCT	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	367
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	3 cut(s)	348, 382, 536
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
AluBI	AGCT	5 cut(s)	156, 256, 539, 556, 580
AluI	AGCT	5 cut(s)	156, 256, 539, 556, 580
Alw21I	GWGCWC	2 cut(s)	46, 558
Alw26I	GTCTC	4 cut(s)	91, 227, 340, 489
AlwI	GGATC	5 cut(s)	299, 365, 378, 467, 560
AlwNI	CAGNNNCTG	1 cut(s)	83
Ama87I	CYCGRG	1 cut(s)	230
Aor51HI	AGCGCT	1 cut(s)	26
AoxI	GGCC	1 cut(s)	10
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	27, 664
AsuC2I	CCSGG	2 cut(s)	318, 368
AsuHPI	GGTGA	4 cut(s)	280, 319, 515, 535
AvaI	CYCGRG	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	558
BarI	GAAGNNNNNNTAC	2 cut(s)	14, 46
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	2 cut(s)	46, 558
BccI	CCATC	1 cut(s)	673
BclI	TGATCA	2 cut(s)	142, 408
BcnI	CCSGG	2 cut(s)	318, 368
BcoDI	GTCTC	4 cut(s)	91, 227, 340, 489
BfaI	CTAG	1 cut(s)	446
BfoI	RGCGCY	1 cut(s)	28
Bme1390I	CCNGG	2 cut(s)	318, 368
BmeT110I	CYCGRG	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	2 cut(s)	318, 368
BpiI	GAAGAC	1 cut(s)	512
Bpu10I	CCTNAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	604
BpuMI	CCSGG	2 cut(s)	318, 368
BsaAI	YACGTR	2 cut(s)	100, 280
BsaJI	CCNNGG	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	4 cut(s)	13, 77, 503, 569
Bse3DI	GCAATG	1 cut(s)	657
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	484, 507
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	2 cut(s)	50, 351
BseNI	ACTGG	4 cut(s)	13, 77, 503, 569
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	12
BsiHKAI	GWGCWC	2 cut(s)	46, 558
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	317, 368
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	4 cut(s)	91, 227, 340, 489
BsmFI	GGGAC	1 cut(s)	642
BsnI	GGCC	1 cut(s)	12
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	2 cut(s)	46, 558
Bsp143I	GATC	7 cut(s)	142, 243, 291, 370, 408, 459, 565
BspACI	CCGC	4 cut(s)	92, 453, 476, 644
BspANI	GGCC	1 cut(s)	12
BspCNI	CTCAG	2 cut(s)	51, 350
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	372
BspPI	GGATC	5 cut(s)	299, 365, 378, 467, 560
BspQI	GCTCTTC	1 cut(s)	546
BsrBI	CCGCTC	1 cut(s)	644
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	4 cut(s)	13, 77, 503, 569
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	7 cut(s)	142, 243, 291, 370, 408, 459, 565
Bst6I	CTCTTC	2 cut(s)	117, 546
BstBAI	YACGTR	2 cut(s)	100, 280
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	3 cut(s)	59, 257, 337
BstF5I	GGATG	2 cut(s)	484, 507
BstFNI	CGCG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	2 cut(s)	27, 664
BstKTI	GATC	7 cut(s)	145, 246, 294, 373, 411, 462, 568
BstMAI	GTCTC	4 cut(s)	91, 227, 340, 489
BstMBI	GATC	7 cut(s)	142, 243, 291, 370, 408, 459, 565
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	2 cut(s)	316, 366
BstUI	CGCG	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	3 cut(s)	291, 370, 565
BstYI	RGATCY	3 cut(s)	291, 370, 565
BsuRI	GGCC	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	484, 507
Cac8I	GCNNGC	1 cut(s)	14
CaiI	CAGNNNCTG	1 cut(s)	83
CfoI	GCGC	2 cut(s)	27, 664
CseI	GACGC	2 cut(s)	83, 663
Csp6I	GTAC	2 cut(s)	80, 277
CviAII	CATG	2 cut(s)	352, 529
CviJI	RGCY	7 cut(s)	12, 156, 202, 256, 539, 556, 580
CviKI_1	RGCY	7 cut(s)	12, 156, 202, 256, 539, 556, 580
CviQI	GTAC	2 cut(s)	80, 277
DdeI	CTNAG	3 cut(s)	59, 257, 337
DpnI	GATC	7 cut(s)	144, 245, 293, 372, 410, 461, 567
DpnII	GATC	7 cut(s)	142, 243, 291, 370, 408, 459, 565
Eam1104I	CTCTTC	2 cut(s)	117, 546
EarI	CTCTTC	2 cut(s)	117, 546
Ecl136II	GAGCTC	1 cut(s)	556
Eco24I	GRGCYC	1 cut(s)	558
Eco32I	GATATC	1 cut(s)	181
Eco47III	AGCGCT	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	556
Eco88I	CYCGRG	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	556
EcoRV	GATATC	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	558
FaeI	CATG	2 cut(s)	355, 532
FaiI	YATR	7 cut(s)	353, 435, 441, 464, 466, 530, 673
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FaqI	GGGAC	1 cut(s)	642
FatI	CATG	2 cut(s)	351, 528
FauI	CCCGC	1 cut(s)	99
FbaI	TGATCA	2 cut(s)	142, 408
FokI	GGATG	2 cut(s)	491, 514
FriOI	GRGCYC	1 cut(s)	558
FspBI	CTAG	1 cut(s)	446
GlaI	GCGC	2 cut(s)	26, 663
HaeII	RGCGCY	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	12
HapII	CCGG	2 cut(s)	317, 368
HgaI	GACGC	2 cut(s)	83, 663
HhaI	GCGC	2 cut(s)	27, 664
Hin1II	CATG	2 cut(s)	355, 532
Hin6I	GCGC	2 cut(s)	25, 662
HinP1I	GCGC	2 cut(s)	25, 662
HincII	GTYRAC	3 cut(s)	6, 219, 616
HindII	GTYRAC	3 cut(s)	6, 219, 616
HinfI	GANTC	2 cut(s)	65, 520
HpaII	CCGG	2 cut(s)	317, 368
HphI	GGTGA	4 cut(s)	280, 319, 515, 535
Hpy166II	GTNNAC	4 cut(s)	6, 219, 616, 649
Hpy188I	TCNGA	7 cut(s)	21, 60, 207, 248, 494, 592, 641
Hpy188III	TCNNGA	2 cut(s)	446, 583
Hpy8I	GTNNAC	4 cut(s)	6, 219, 616, 649
Hpy99I	CGWCG	1 cut(s)	551
HpyAV	CCTTC	5 cut(s)	157, 277, 443, 596, 604
HpyCH4IV	ACGT	2 cut(s)	99, 279
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	3 cut(s)	59, 257, 337
HpySE526I	ACGT	2 cut(s)	99, 279
Hsp92II	CATG	2 cut(s)	355, 532
HspAI	GCGC	2 cut(s)	25, 662
Ksp22I	TGATCA	2 cut(s)	142, 408
Kzo9I	GATC	7 cut(s)	142, 243, 291, 370, 408, 459, 565
LguI	GCTCTTC	1 cut(s)	546
LmnI	GCTCC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	2 cut(s)	99, 279
MaeIII	GTNAC	5 cut(s)	62, 95, 268, 307, 571
MalI	GATC	7 cut(s)	144, 245, 293, 372, 410, 461, 567
MbiI	CCGCTC	1 cut(s)	644
MboI	GATC	7 cut(s)	142, 243, 291, 370, 408, 459, 565
MboII	GAAGA	3 cut(s)	104, 517, 563
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	3 cut(s)	291, 370, 565
MhlI	GDGCHC	2 cut(s)	46, 558
MluCI	AATT	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	6 cut(s)	27, 66, 145, 384, 478, 592
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	1 cut(s)	302
MslI	CAYNNNNRTG	1 cut(s)	670
MspI	CCGG	2 cut(s)	317, 368
MspR9I	CCNGG	2 cut(s)	318, 368
MunI	CAATTG	1 cut(s)	471
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	22
NciI	CCSGG	2 cut(s)	318, 368
NdeII	GATC	7 cut(s)	142, 243, 291, 370, 408, 459, 565
NlaIII	CATG	2 cut(s)	355, 532
NlaIV	GGNNCC	1 cut(s)	372
NmuCI	GTSAC	4 cut(s)	62, 95, 268, 307
NspI	RCATGY	1 cut(s)	355
PciI	ACATGT	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	546
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	520
PfoI	TCCNGGA	1 cut(s)	366
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	2 cut(s)	100, 280
PscI	ACATGT	1 cut(s)	351
Psp124BI	GAGCTC	1 cut(s)	558
PspN4I	GGNNCC	1 cut(s)	372
PstNI	CAGNNNCTG	1 cut(s)	83
PsuI	RGATCY	3 cut(s)	291, 370, 565
RsaI	GTAC	2 cut(s)	81, 278
RsaNI	GTAC	2 cut(s)	80, 277
RseI	CAYNNNNRTG	1 cut(s)	670
SacI	GAGCTC	1 cut(s)	558
SapI	GCTCTTC	1 cut(s)	546
SaqAI	TTAA	1 cut(s)	302
Sau3AI	GATC	7 cut(s)	142, 243, 291, 370, 408, 459, 565
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	318, 368
SduI	GDGCHC	2 cut(s)	46, 558
SmiMI	CAYNNNNRTG	1 cut(s)	670
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
Sse9I	AATT	1 cut(s)	471
SsiI	CCGC	4 cut(s)	92, 453, 476, 644
SspMI	CTAG	1 cut(s)	446
SstI	GAGCTC	1 cut(s)	558
StyD4I	CCNGG	2 cut(s)	316, 366
TaiI	ACGT	2 cut(s)	102, 282
TasI	AATT	1 cut(s)	471
TfiI	GAWTC	1 cut(s)	520
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseFI	GTSAC	4 cut(s)	62, 95, 268, 307
Tsp45I	GTSAC	4 cut(s)	62, 95, 268, 307
TspDTI	ATGAA	2 cut(s)	104, 518
TspGWI	ACGGA	1 cut(s)	611
XbaI	TCTAGA	1 cut(s)	445
XceI	RCATGY	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.