Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012895

Physical Location & Seq

Genomic Coordinates Forward (+)

62551686 .. 62554971

Gene Structure 3286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG453900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGGCCGAAGAAACCCATGTTTAATCTCTCTTTTCGGCTCGAAACCCCGAATCTGTGAATTTCAGGCGGCGAGTGCTAGAGGGAGGGTCGCAAAACACCTTCGGAACCAATTTCCGGCGTCAACTCCAATACATAAGATACCCAAGTTTGCTGAAAAAGTCATGTTGGAAAACAAAGTAAACTCAACTCATAGCAAGTCCACTGGTCTGCCTCGGAAGCGTTTCTACAGAGCAAGAGCACACAGTAACCCTCTGAGTGACTCCCACTTTCCAGTACCTGTCGCCCCCAGTCATGTGGATTATTCTCTTCATTACCCGCAGCTCTTCCCCTCATCTGATGGAGCTGGTAGTTGCAAAAAGATCCAGTTTGCAGATATTGGCTGTGGTTTTGGGGGGCTTCTGATAAGCCTTTCAACTCTTTTCCCTAGCACTCTGATGATTGGAATGGAGCTTAGGGATAAGGTGACAGAGTATGTCAAGGAAAGGATTTTGGCTTTAAGGGTGACAAATCCGGGTCAATACCAGAATATCTCAGTGGTTCGCACTAATTCCATGAAGTACATCCCAAATTACTTTGAGAAAGCACAGCTTTCAAAGATGTTTTTCCTGTTCCCGGATCCTCACTTCAAAGAGAAAAATCACCGTCGTAGGGTGATCAGTCCATTCTTGCTGGATGAGTATGCTTATGCTCTAGAAGTTGGTGGCATTATATACACAATAACAGATGTTGAAGAACTTGGAGACTGGATGAAGGCTTGTTTAGAAAATCACCCTATGTTTGAAGCTCTCACAAGTGAAGAGGTCGAAGCAGATCCAGTTACAAAGCTCTTGAGTTCTGCAACCGAGGAAGGACAGAAGGACCAAATCGCCGAGTTGCCTTCTGAGATTGAAGAAAACGAGTCTGATTCAACATTGCCAAGAAGCCAATCTGATACAAACACTGAAGCCTTGAGGGCCATTGATACCCAAGTCCAGCAACTCCTCTCCTCATTAACAGCTCAAAATGCACCACCACCACCATCATCGTCTGAAAATCAAAGGCGGCCGCTTTTCACTGCCAGTGGAGTGAGTAGTGCCATTGCAGAAACAGAAAGAACCCGCCTTTTGTTTTCGGTAGCAGTAGCAATGTTGGTGGTTTTAGTTCATCTGGGTTTTCCTTTGATGGGGACTAGTAACATAGTGAAGACCCTGTTGGGTTTTCGGCCGTTGTACTTGGTTTTGCTGACCAATGTGACATTTGTGCTGGCAAGGATTCTTGGTAAGCAGAGAGTCTCTGAAAGGCCTGGAGAGATTAGAACTTCGGCTGAAGGAATTGAGTGGGTTGCGCAGTTAGGGAGGGCTGTAGAGATAGGCTTGGTAGCGCAGAAGGTACTTGATGCTCTGTTTATGGATTGTGCTGTGTATGCAATAATAGTTGTATGTGGTCTCTCTTCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008176 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0036265 GO:0043170 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0106004 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_4

Protein Analysis

479

Amino Acids

53.09

Weight (kDa)

8.36

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_4	PF02390	121 - 287	2.3e-46	Putative methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24840
fragaria_vesca	FvH4_2g36340
malus_domestica	MD08G1121000.v1.1 MD15G1100000.v1.1
prunus_persica	Prupe.1G454800_v2.0.a1
pyrus_communis	pycom08g10110 pycom15g09200
rosa_chinensis	RchiOBHm_Chr6g0305541
rosa_laevigata	RLG00000010878
rosa_multiflora	Rmu_co8330221.1_g000001 Rmu_sc0000841.1_g000004
rosa_roxburghii	Rroxscaffold_7G00162600
rosa_rugosa	Rorug06G0341500
rosa_samantha	Rh6AG453500 Rh6BG448100 Rh6CG467300 Rh6DG453900
rosa_wichuraiana	Rw6G039520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1326
AciI	CCGC	5 cut(s)	68, 317, 1042, 1046, 1099
AclWI	GGATC	4 cut(s)	355, 611, 624, 806
AcoI	YGGCCR	2 cut(s)	1043, 1202
AcsI	RAATTY	1 cut(s)	59
AcuI	CTGAAG	2 cut(s)	963, 1326
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	4 cut(s)	276, 560, 1211, 1371
AfiI	CCNNNNNNNGG	4 cut(s)	115, 613, 649, 1163
AgsI	TTSAA	7 cut(s)	414, 594, 628, 731, 782, 890, 909
AhlI	ACTAGT	1 cut(s)	1169
AjnI	CCWGG	1 cut(s)	1282
AjuI	GAANNNNNNNTTGG	2 cut(s)	1175, 1207
AluBI	AGCT	7 cut(s)	322, 344, 451, 589, 785, 826, 998
AluI	AGCT	7 cut(s)	322, 344, 451, 589, 785, 826, 998
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	3 cut(s)	735, 1276, 1430
AlwI	GGATC	4 cut(s)	355, 611, 624, 806
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	5 cut(s)	4, 954, 1043, 1202, 1280
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	1 cut(s)	59
Asp700I	GAANNNNTTC	1 cut(s)	221
AspLEI	GCGC	2 cut(s)	1327, 1363
AspS9I	GGNCC	3 cut(s)	4, 859, 954
AsuC2I	CCSGG	2 cut(s)	513, 614
AsuHPI	GGTGA	5 cut(s)	475, 514, 632, 664, 761
AvaII	GGWCC	1 cut(s)	859
BaeI	ACNNNNGTAYC	4 cut(s)	131, 164, 954, 987
BamHI	GGATCC	1 cut(s)	616
BarI	GAAGNNNNNNTAC	2 cut(s)	209, 241
BbsI	GAAGAC	1 cut(s)	1190
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	3 cut(s)	332, 1027, 1156
BceAI	ACGGC	1 cut(s)	1189
BciT130I	CCWGG	1 cut(s)	1284
BclI	TGATCA	1 cut(s)	654
BcnI	CCSGG	2 cut(s)	513, 614
BcoDI	GTCTC	3 cut(s)	735, 1276, 1430
BcuI	ACTAGT	1 cut(s)	1169
BfaI	CTAG	4 cut(s)	78, 426, 692, 1170
BfmI	CTRYAG	2 cut(s)	226, 1341
BglI	GCCNNNNNGGC	1 cut(s)	953
BisI	GCNGC	4 cut(s)	69, 320, 1043, 1046
BlsI	GCNGC	4 cut(s)	70, 321, 1044, 1047
Bme1390I	CCNGG	3 cut(s)	513, 614, 1284
Bme18I	GGWCC	1 cut(s)	859
BmgT120I	GGNCC	3 cut(s)	4, 859, 954
BmiI	GGNNCC	2 cut(s)	107, 618
BmrFI	CCNGG	3 cut(s)	513, 614, 1284
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	1366
BmuI	ACTGGG	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	1190
BpmI	CTGGAG	1 cut(s)	1305
Bpu10I	CCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	2 cut(s)	850, 970
BpuMI	CCSGG	2 cut(s)	513, 614
BsaHI	GRCGYC	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	1430
BsaJI	CCNNGG	2 cut(s)	212, 843
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 613, 649, 1163
Bse1I	ACTGG	7 cut(s)	208, 272, 288, 364, 749, 815, 1059
Bse3DI	GCAATG	3 cut(s)	911, 1077, 1131
BseBI	CCWGG	1 cut(s)	1284
BseDI	CCNNGG	2 cut(s)	212, 843
BseGI	GGATG	3 cut(s)	561, 679, 753
BseLI	CCNNNNNNNGG	4 cut(s)	115, 613, 649, 1163
BseMI	GCAATG	3 cut(s)	911, 1077, 1131
BseMII	CTCAG	3 cut(s)	245, 546, 873
BseNI	ACTGG	7 cut(s)	208, 272, 288, 364, 749, 815, 1059
BseRI	GAGGAG	2 cut(s)	971, 976
BseX3I	CGGCCG	2 cut(s)	1043, 1202
BseXI	GCAGC	1 cut(s)	331
Bsh1285I	CGRYCG	2 cut(s)	1046, 1205
BshFI	GGCC	5 cut(s)	6, 956, 1045, 1204, 1282
BsiEI	CGRYCG	2 cut(s)	1046, 1205
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	3 cut(s)	116, 512, 614
BslFI	GGGAC	1 cut(s)	1180
BslI	CCNNNNNNNGG	4 cut(s)	115, 613, 649, 1163
BsmAI	GTCTC	3 cut(s)	735, 1276, 1430
BsmFI	GGGAC	1 cut(s)	1180
BsnI	GGCC	5 cut(s)	6, 956, 1045, 1204, 1282
Bso31I	GGTCTC	1 cut(s)	1430
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	4 cut(s)	360, 616, 654, 811
BspACI	CCGC	5 cut(s)	68, 317, 1042, 1046, 1099
BspANI	GGCC	5 cut(s)	6, 956, 1045, 1204, 1282
BspCNI	CTCAG	3 cut(s)	246, 545, 874
BspLI	GGNNCC	2 cut(s)	107, 618
BspPI	GGATC	4 cut(s)	355, 611, 624, 806
BspQI	GCTCTTC	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	1430
BsrDI	GCAATG	3 cut(s)	911, 1077, 1131
BsrI	ACTGG	7 cut(s)	208, 272, 288, 364, 749, 815, 1059
BssECI	CCNNGG	2 cut(s)	212, 843
BssMI	GATC	4 cut(s)	360, 616, 654, 811
BssNI	GRCGYC	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	1284
Bst4CI	ACNGT	2 cut(s)	245, 644
Bst6I	CTCTTC	4 cut(s)	312, 329, 792, 1435
BstACI	GRCGYC	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	1245
BstDEI	CTNAG	4 cut(s)	254, 452, 532, 882
BstF5I	GGATG	3 cut(s)	561, 679, 753
BstHHI	GCGC	2 cut(s)	1327, 1363
BstKTI	GATC	4 cut(s)	363, 619, 657, 814
BstMAI	GTCTC	3 cut(s)	735, 1276, 1430
BstMBI	GATC	4 cut(s)	360, 616, 654, 811
BstMCI	CGRYCG	2 cut(s)	1046, 1205
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 217, 953, 1004, 1403
BstNI	CCWGG	1 cut(s)	1284
BstSCI	CCNGG	3 cut(s)	511, 612, 1282
BstSFI	CTRYAG	2 cut(s)	226, 1341
BstV1I	GCAGC	1 cut(s)	331
BstV2I	GAAGAC	1 cut(s)	1190
BstX2I	RGATCY	3 cut(s)	360, 616, 811
BstXI	CCANNNNNNTGG	1 cut(s)	295
BstYI	RGATCY	3 cut(s)	360, 616, 811
BstZI	CGGCCG	2 cut(s)	1043, 1202
BsuRI	GGCC	5 cut(s)	6, 956, 1045, 1204, 1282
BtsCI	GGATG	3 cut(s)	561, 679, 753
BtsI	GCAGTG	1 cut(s)	1053
BtsIMutI	CAGTG	5 cut(s)	201, 540, 939, 1053, 1066
Cac8I	GCNNGC	1 cut(s)	1245
CaiI	CAGNNNCTG	1 cut(s)	278
CciNI	GCGGCCGC	1 cut(s)	1043
CfoI	GCGC	2 cut(s)	1327, 1363
Cfr13I	GGNCC	3 cut(s)	4, 859, 954
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	4 cut(s)	275, 559, 1210, 1370
CspCI	CAANNNNNGTGG	2 cut(s)	1113, 1148
CviAII	CATG	4 cut(s)	18, 163, 293, 553
CviQI	GTAC	4 cut(s)	275, 559, 1210, 1370
DdeI	CTNAG	4 cut(s)	254, 452, 532, 882
DpnI	GATC	4 cut(s)	362, 618, 656, 813
DpnII	GATC	4 cut(s)	360, 616, 654, 811
EaeI	YGGCCR	2 cut(s)	1043, 1202
EagI	CGGCCG	2 cut(s)	1043, 1202
Eam1104I	CTCTTC	4 cut(s)	312, 329, 792, 1435
EarI	CTCTTC	4 cut(s)	312, 329, 792, 1435
EclXI	CGGCCG	2 cut(s)	1043, 1202
Eco147I	AGGCCT	1 cut(s)	1282
Eco31I	GGTCTC	1 cut(s)	1430
Eco47I	GGWCC	1 cut(s)	859
Eco52I	CGGCCG	2 cut(s)	1043, 1202
Eco57I	CTGAAG	2 cut(s)	963, 1326
EcoRII	CCWGG	1 cut(s)	1282
FaeI	CATG	4 cut(s)	21, 166, 296, 556
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	1 cut(s)	1180
FatI	CATG	4 cut(s)	17, 162, 292, 552
FauI	CCCGC	2 cut(s)	324, 1106
FbaI	TGATCA	1 cut(s)	654
Fnu4HI	GCNGC	4 cut(s)	69, 320, 1043, 1046
FokI	GGATG	3 cut(s)	548, 686, 760
Fsp4HI	GCNGC	4 cut(s)	69, 320, 1043, 1046
FspBI	CTAG	4 cut(s)	78, 426, 692, 1170
FspI	TGCGCA	1 cut(s)	1326
GlaI	GCGC	2 cut(s)	1326, 1362
GluI	GCNGC	4 cut(s)	69, 320, 1043, 1046
GsuI	CTGGAG	1 cut(s)	1305
HaeIII	GGCC	5 cut(s)	6, 956, 1045, 1204, 1282
HapII	CCGG	3 cut(s)	116, 512, 614
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	2 cut(s)	1327, 1363
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	4 cut(s)	21, 166, 296, 556
Hin6I	GCGC	2 cut(s)	1325, 1361
HinP1I	GCGC	2 cut(s)	1325, 1361
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HinfI	GANTC	6 cut(s)	51, 260, 899, 905, 1252, 1269
HpaII	CCGG	3 cut(s)	116, 512, 614
HphI	GGTGA	5 cut(s)	475, 514, 632, 664, 761
Hpy166II	GTNNAC	3 cut(s)	123, 181, 201
Hpy188III	TCNNGA	2 cut(s)	692, 829
Hpy8I	GTNNAC	3 cut(s)	123, 181, 201
Hpy99I	CGWCG	1 cut(s)	648
HpyAV	CCTTC	7 cut(s)	110, 745, 842, 850, 888, 1301, 1360
HpyCH4III	ACNGT	2 cut(s)	245, 644
HpyCH4V	TGCA	7 cut(s)	354, 371, 839, 1007, 1082, 1406, 1436
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 217, 953, 1004, 1403
HpyF3I	CTNAG	4 cut(s)	254, 452, 532, 882
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	4 cut(s)	21, 166, 296, 556
HspAI	GCGC	2 cut(s)	1325, 1361
Ksp22I	TGATCA	1 cut(s)	654
Kzo9I	GATC	4 cut(s)	360, 616, 654, 811
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	2 cut(s)	341, 448
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	1 cut(s)	1366
MaeI	CTAG	4 cut(s)	78, 426, 692, 1170
MaeIII	GTNAC	7 cut(s)	245, 257, 463, 502, 817, 1172, 1231
MalI	GATC	4 cut(s)	362, 618, 656, 813
MboI	GATC	4 cut(s)	360, 616, 654, 811
MboII	GAAGA	8 cut(s)	21, 299, 316, 743, 809, 902, 1195, 1422
MflI	RGATCY	3 cut(s)	360, 616, 811
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	5 cut(s)	59, 110, 547, 568, 1311
MlyI	GAGTC	3 cut(s)	254, 908, 1278
MmeI	TCCRAC	1 cut(s)	147
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	3 cut(s)	23, 497, 992
MslI	CAYNNNNRTG	1 cut(s)	434
MspI	CCGG	3 cut(s)	116, 512, 614
MspR9I	CCNGG	3 cut(s)	513, 614, 1284
MvaI	CCWGG	1 cut(s)	1284
MwoI	GCNNNNNNNGC	5 cut(s)	74, 217, 953, 1004, 1403
NciI	CCSGG	2 cut(s)	513, 614
NdeII	GATC	4 cut(s)	360, 616, 654, 811
NlaIII	CATG	4 cut(s)	21, 166, 296, 556
NlaIV	GGNNCC	2 cut(s)	107, 618
NmeAIII	GCCGAG	1 cut(s)	895
NmuCI	GTSAC	4 cut(s)	257, 463, 502, 1231
NotI	GCGGCCGC	1 cut(s)	1043
NsbI	TGCGCA	1 cut(s)	1326
PceI	AGGCCT	1 cut(s)	1282
PciSI	GCTCTTC	1 cut(s)	329
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	3 cut(s)	51, 905, 1252
PfoI	TCCNGGA	1 cut(s)	612
PkrI	GCNGC	4 cut(s)	70, 321, 1044, 1047
PleI	GAGTC	3 cut(s)	254, 907, 1277
PpsI	GAGTC	3 cut(s)	254, 907, 1277
Psp6I	CCWGG	1 cut(s)	1282
PspGI	CCWGG	1 cut(s)	1282
PspN4I	GGNNCC	2 cut(s)	107, 618
PspPI	GGNCC	3 cut(s)	4, 859, 954
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	3 cut(s)	360, 616, 811
RsaI	GTAC	4 cut(s)	276, 560, 1211, 1371
RsaNI	GTAC	4 cut(s)	275, 559, 1210, 1370
RseI	CAYNNNNRTG	1 cut(s)	434
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	3 cut(s)	23, 497, 992
SatI	GCNGC	4 cut(s)	69, 320, 1043, 1046
Sau3AI	GATC	4 cut(s)	360, 616, 654, 811
Sau96I	GGNCC	3 cut(s)	4, 859, 954
SchI	GAGTC	3 cut(s)	254, 908, 1278
ScrFI	CCNGG	3 cut(s)	513, 614, 1284
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	1 cut(s)	1366
SfcI	CTRYAG	2 cut(s)	226, 1341
SinI	GGWCC	1 cut(s)	859
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	2 cut(s)	829, 949
SmoI	CTYRAG	2 cut(s)	829, 949
SpeI	ACTAGT	1 cut(s)	1169
Sse9I	AATT	5 cut(s)	59, 110, 547, 568, 1311
SseBI	AGGCCT	1 cut(s)	1282
SsiI	CCGC	5 cut(s)	68, 317, 1042, 1046, 1099
SspMI	CTAG	4 cut(s)	78, 426, 692, 1170
StuI	AGGCCT	1 cut(s)	1282
StyD4I	CCNGG	3 cut(s)	511, 612, 1282
TaaI	ACNGT	2 cut(s)	245, 644
TaqI	TCGA	2 cut(s)	41, 804
TasI	AATT	5 cut(s)	59, 110, 547, 568, 1311
TatI	WGTACW	2 cut(s)	558, 1209
TauI	GCSGC	3 cut(s)	71, 1045, 1048
TfiI	GAWTC	3 cut(s)	51, 905, 1252
Tru1I	TTAA	3 cut(s)	23, 497, 992
Tru9I	TTAA	3 cut(s)	23, 497, 992
TscAI	CASTG	5 cut(s)	208, 540, 946, 1060, 1066
TseFI	GTSAC	4 cut(s)	257, 463, 502, 1231
TseI	GCWGC	1 cut(s)	319
Tsp45I	GTSAC	4 cut(s)	257, 463, 502, 1231
TspDTI	ATGAA	4 cut(s)	299, 569, 764, 1133
TspRI	CASTG	5 cut(s)	208, 540, 946, 1060, 1066
VpaK11BI	GGWCC	1 cut(s)	859
XapI	RAATTY	1 cut(s)	59
XbaI	TCTAGA	1 cut(s)	691
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	4 cut(s)	78, 426, 692, 1170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.