Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0012895

Physical Location & Seq

Genomic Coordinates Reverse (-)

8424273 .. 8424758

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g10110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGATCGGGATGGAGCTTAGGGACAAAGTGACAGAGTATGTCAAAGAAAGGATCTTGGCTTTAAGGGTGACAAATCCTGGTCAATACCAAAATATCTCAGTGGTTCGGACTAATTCCATGAAATACATTCCAAATTACTTTGAGAAAGGACAGCTTTCGAAGATGTTTTTTCTCTTTCCGGATCCTCACTTCAAAGAGAAAAATCATCGTCGTAGAGTGATCAGTCCATTCTTGCTGGATGAGTATGCTTATGTTCTAGAAGTTGGTGGGATCATATACACAATTACGGATGTTGAGGAGCTTGGAGACTGGATGAAGACTTGCTTGGAGAATCACCCCATGTTTGAAGCTCTCACAGACGAAGAGCTCAAAGCAGATCCAGTCACGAAGCTCTTGAGTTCTGCAACCGAGGAAGGACAGAAGGTTGACAGAAATGGAGGACAGACTTTCCGAGCGGTTTACAGACGCATTGCACCATCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008176 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0036265 GO:0043170 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0106004 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_4

Protein Analysis

162

Amino Acids

18.73

Weight (kDa)

6.32

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_4	PF02390	1 - 151	3.5e-41	Putative methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24840
fragaria_vesca	FvH4_2g36340
malus_domestica	MD08G1121000.v1.1 MD15G1100000.v1.1
prunus_persica	Prupe.1G454800_v2.0.a1
pyrus_communis	pycom08g10110 pycom15g09200
rosa_chinensis	RchiOBHm_Chr6g0305541
rosa_laevigata	RLG00000010878
rosa_multiflora	Rmu_co8330221.1_g000001 Rmu_sc0000841.1_g000004
rosa_roxburghii	Rroxscaffold_7G00162600
rosa_rugosa	Rorug06G0341500
rosa_samantha	Rh6AG453500 Rh6BG448100 Rh6CG467300 Rh6DG453900
rosa_wichuraiana	Rw6G039520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	455
AccIII	TCCGGA	1 cut(s)	178
AciI	CCGC	1 cut(s)	455
AclWI	GGATC	5 cut(s)	59, 176, 189, 278, 371
AgsI	TTSAA	2 cut(s)	193, 347
AjnI	CCWGG	1 cut(s)	76
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	6 cut(s)	16, 154, 301, 350, 367, 391
AluI	AGCT	6 cut(s)	16, 154, 301, 350, 367, 391
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	5 cut(s)	59, 176, 189, 278, 371
Aor13HI	TCCGGA	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	79, 326
AsuII	TTCGAA	1 cut(s)	158
BamHI	GGATCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	369
BccI	CCATC	2 cut(s)	4, 484
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	323
Bpu10I	CCTNAGC	1 cut(s)	17
Bpu14I	TTCGAA	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	415
BsaJI	CCNNGG	1 cut(s)	408
BsaWI	WCCGGW	1 cut(s)	178
Bse1I	ACTGG	2 cut(s)	314, 380
Bse3DI	GCAATG	1 cut(s)	468
BseAI	TCCGGA	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	4 cut(s)	15, 244, 295, 318
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	314, 380
BseRI	GAGGAG	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp13I	TCCGGA	1 cut(s)	178
Bsp143I	GATC	6 cut(s)	3, 51, 181, 219, 270, 376
BspACI	CCGC	1 cut(s)	455
BspCNI	CTCAG	1 cut(s)	110
BspEI	TCCGGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	5 cut(s)	59, 176, 189, 278, 371
BspQI	GCTCTTC	1 cut(s)	357
BspT104I	TTCGAA	1 cut(s)	158
BsrBI	CCGCTC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	314, 380
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	6 cut(s)	3, 51, 181, 219, 270, 376
Bst2UI	CCWGG	1 cut(s)	78
Bst6I	CTCTTC	1 cut(s)	357
BstBI	TTCGAA	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	17, 97
BstF5I	GGATG	4 cut(s)	15, 244, 295, 318
BstKTI	GATC	6 cut(s)	6, 54, 184, 222, 273, 379
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	6 cut(s)	3, 51, 181, 219, 270, 376
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	3 cut(s)	51, 181, 376
BstYI	RGATCY	3 cut(s)	51, 181, 376
BtsCI	GGATG	4 cut(s)	15, 244, 295, 318
BtsIMutI	CAGTG	1 cut(s)	105
CseI	GACGC	1 cut(s)	474
CviAII	CATG	2 cut(s)	118, 340
CviJI	RGCY	7 cut(s)	16, 59, 154, 301, 350, 367, 391
CviKI_1	RGCY	7 cut(s)	16, 59, 154, 301, 350, 367, 391
DdeI	CTNAG	2 cut(s)	17, 97
DpnI	GATC	6 cut(s)	5, 53, 183, 221, 272, 378
DpnII	GATC	6 cut(s)	3, 51, 181, 219, 270, 376
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Ecl136II	GAGCTC	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	369
Eco53kI	GAGCTC	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	369
FaeI	CATG	2 cut(s)	121, 343
FaiI	YATR	8 cut(s)	39, 119, 246, 252, 275, 277, 341, 484
FalI	AAGNNNNNCTT	4 cut(s)	138, 170, 308, 340
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	2 cut(s)	117, 339
FbaI	TGATCA	1 cut(s)	219
FokI	GGATG	4 cut(s)	22, 251, 302, 325
FriOI	GRGCYC	1 cut(s)	369
FspBI	CTAG	1 cut(s)	257
HapII	CCGG	1 cut(s)	179
HgaI	GACGC	1 cut(s)	474
Hin1II	CATG	2 cut(s)	121, 343
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	2 cut(s)	79, 326
Hpy166II	GTNNAC	2 cut(s)	427, 460
Hpy188I	TCNGA	2 cut(s)	108, 452
Hpy188III	TCNNGA	5 cut(s)	7, 179, 257, 385, 394
Hpy8I	GTNNAC	2 cut(s)	427, 460
Hpy99I	CGWCG	1 cut(s)	213
HpyAV	CCTTC	2 cut(s)	407, 415
HpyCH4V	TGCA	2 cut(s)	404, 473
HpyF3I	CTNAG	2 cut(s)	17, 97
Hsp92II	CATG	2 cut(s)	121, 343
Kpn2I	TCCGGA	1 cut(s)	178
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	6 cut(s)	3, 51, 181, 219, 270, 376
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	2 cut(s)	13, 298
LpnPI	CCDG	6 cut(s)	63, 90, 192, 221, 295, 393
MaeI	CTAG	1 cut(s)	257
MaeIII	GTNAC	3 cut(s)	28, 67, 382
MalI	GATC	6 cut(s)	5, 53, 183, 221, 272, 378
MbiI	CCGCTC	1 cut(s)	455
MboI	GATC	6 cut(s)	3, 51, 181, 219, 270, 376
MboII	GAAGA	3 cut(s)	172, 328, 374
MflI	RGATCY	3 cut(s)	51, 181, 376
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	3 cut(s)	112, 133, 282
MnlI	CCTC	4 cut(s)	195, 289, 403, 431
MroI	TCCGGA	1 cut(s)	178
MseI	TTAA	1 cut(s)	62
MslI	CAYNNNNRTG	1 cut(s)	481
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
NdeII	GATC	6 cut(s)	3, 51, 181, 219, 270, 376
NlaIII	CATG	2 cut(s)	121, 343
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	3 cut(s)	28, 67, 382
NspV	TTCGAA	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	331
Psp124BI	GAGCTC	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	183
PsuI	RGATCY	3 cut(s)	51, 181, 376
RseI	CAYNNNNRTG	1 cut(s)	481
SacI	GAGCTC	1 cut(s)	369
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	62
Sau3AI	GATC	6 cut(s)	3, 51, 181, 219, 270, 376
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	7 cut(s)	18, 156, 303, 352, 369, 393, 426
SfuI	TTCGAA	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
Sse9I	AATT	3 cut(s)	112, 133, 282
SsiI	CCGC	1 cut(s)	455
SspMI	CTAG	1 cut(s)	257
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	76
TaqI	TCGA	1 cut(s)	158
TasI	AATT	3 cut(s)	112, 133, 282
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	3 cut(s)	28, 67, 382
Tsp45I	GTSAC	3 cut(s)	28, 67, 382
TspDTI	ATGAA	2 cut(s)	134, 329
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	105
XbaI	TCTAGA	1 cut(s)	256
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.