Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012895

Physical Location & Seq

Genomic Coordinates Reverse (-)

5035822 .. 5040875

Gene Structure 5054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTTGGAAAACAAAGTAAACTCAACTCATAGCAAGTCCACTGGTCTGCCTCGGAAGCGTTTCTACAGAGCAAGAGCACACAGTAACCCTCTGAGTGACTCCCACTTTCCAGTACCTGTTGCCCCCAGTCATGTGGATTATTCTCTTCATTACCCGCAGCTCTTCCCCTCATCTGATGAAGCTGGTAGTTGCAAAAAGATCCAGTTTGCAGATATTGGCTGTGGTTTTGGGGGGCTTCTGATAAGCCTTTCAACTCTTTTCCCTGACACCCTGATGATTGGAATGGAGCTTAGGGATAAGGTGACAGAGTATGTCAAGGAAAGGATTTTGGCTTTAAGGGTGACAAATCCTGGCCAATACCAGAATATCTCAGTGGTTCGGACTAATTCCATGAAGTACATCCCGAACTACTTCGAGAAAGCACAGCTTTCAAAGATGTTTTTCCTGTTCCCGGATCCTCACTTCAAAGAGAAAAATCACCGTCGTAGGGTGATCAGTCCATTCTTGCTGGATGAGTATGCTTATGCTCTAGAAGTTGGTGGCATTATATACACAATAACAGATGTTGAAGAACTTGGAGACTGGATGAAGGCTTGTTTAGAAAATCACCCTATGTTTGAAGCTCTCACAAGTGAAGAGGTCGCAGCAGATCCAGTTACAAAGCTCTTGAGTTCTGCAACGGAGGAAGGGCAGAAGGTGGACAGAAACGGGGGACAGACTTTCCGAGCAATTTACAGACGCATTGCTCCATCCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008176 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0036265 GO:0043170 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0106004 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_4

Protein Analysis

252

Amino Acids

28.57

Weight (kDa)

7.74

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_4	PF02390	67 - 242	6.2e-50	Putative methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24840
fragaria_vesca	FvH4_2g36340
malus_domestica	MD08G1121000.v1.1 MD15G1100000.v1.1
prunus_persica	Prupe.1G454800_v2.0.a1
pyrus_communis	pycom08g10110 pycom15g09200
rosa_chinensis	RchiOBHm_Chr6g0305541
rosa_laevigata	RLG00000010878
rosa_multiflora	Rmu_co8330221.1_g000001 Rmu_sc0000841.1_g000004
rosa_roxburghii	Rroxscaffold_7G00162600
rosa_rugosa	Rorug06G0341500
rosa_samantha	Rh6AG453500 Rh6BG448100 Rh6CG467300 Rh6DG453900
rosa_wichuraiana	Rw6G039520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	4 cut(s)	193, 449, 462, 644
AcoI	YGGCCR	1 cut(s)	352
AfaI	GTAC	2 cut(s)	114, 398
AfiI	CCNNNNNNNGG	2 cut(s)	451, 487
AgsI	TTSAA	5 cut(s)	252, 432, 466, 569, 620
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	6 cut(s)	160, 182, 289, 427, 623, 664
AluI	AGCT	6 cut(s)	160, 182, 289, 427, 623, 664
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	573
AlwI	GGATC	4 cut(s)	193, 449, 462, 644
AlwNI	CAGNNNCTG	1 cut(s)	116
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	2 cut(s)	157, 644
Asp700I	GAANNNNTTC	2 cut(s)	59, 410
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	5 cut(s)	313, 352, 470, 502, 599
BalI	TGGCCA	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	454
BarI	GAAGNNNNNNTAC	2 cut(s)	47, 79
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	169, 656
BccI	CCATC	1 cut(s)	757
BciT130I	CCWGG	1 cut(s)	351
BclI	TGATCA	1 cut(s)	492
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	573
BfaI	CTAG	1 cut(s)	530
BfmI	CTRYAG	1 cut(s)	64
BisI	GCNGC	2 cut(s)	158, 645
BlsI	GCNGC	2 cut(s)	159, 646
Bme1390I	CCNGG	2 cut(s)	351, 452
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	2 cut(s)	351, 452
BmrI	ACTGGG	1 cut(s)	120
BmuI	ACTGGG	1 cut(s)	120
Bpu10I	CCTNAGC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	688
BpuMI	CCSGG	1 cut(s)	452
BsaJI	CCNNGG	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	2 cut(s)	451, 487
Bse1I	ACTGG	6 cut(s)	46, 110, 126, 202, 587, 653
Bse3DI	GCAATG	1 cut(s)	741
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	4 cut(s)	399, 517, 591, 749
BseLI	CCNNNNNNNGG	2 cut(s)	451, 487
BseMI	GCAATG	1 cut(s)	741
BseMII	CTCAG	2 cut(s)	83, 384
BseNI	ACTGG	6 cut(s)	46, 110, 126, 202, 587, 653
BseXI	GCAGC	2 cut(s)	169, 656
BshFI	GGCC	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	452
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	2 cut(s)	451, 487
BsmAI	GTCTC	1 cut(s)	573
BsmFI	GGGAC	1 cut(s)	726
BsnI	GGCC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	4 cut(s)	198, 454, 492, 649
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	2 cut(s)	84, 383
BspLI	GGNNCC	1 cut(s)	456
BspPI	GGATC	4 cut(s)	193, 449, 462, 644
BspQI	GCTCTTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	741
BsrI	ACTGG	6 cut(s)	46, 110, 126, 202, 587, 653
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	4 cut(s)	198, 454, 492, 649
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	2 cut(s)	83, 482
Bst6I	CTCTTC	3 cut(s)	150, 167, 630
BstDEI	CTNAG	3 cut(s)	92, 290, 370
BstF5I	GGATG	4 cut(s)	399, 517, 591, 749
BstKTI	GATC	4 cut(s)	201, 457, 495, 652
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	4 cut(s)	198, 454, 492, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	2 cut(s)	349, 450
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	2 cut(s)	169, 656
BstX2I	RGATCY	3 cut(s)	198, 454, 649
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	3 cut(s)	198, 454, 649
BsuRI	GGCC	1 cut(s)	354
BtsCI	GGATG	4 cut(s)	399, 517, 591, 749
BtsIMutI	CAGTG	2 cut(s)	39, 378
CaiI	CAGNNNCTG	1 cut(s)	116
CseI	GACGC	1 cut(s)	747
Csp6I	GTAC	2 cut(s)	113, 397
CviAII	CATG	2 cut(s)	131, 391
CviQI	GTAC	2 cut(s)	113, 397
DdeI	CTNAG	3 cut(s)	92, 290, 370
DpnI	GATC	4 cut(s)	200, 456, 494, 651
DpnII	GATC	4 cut(s)	198, 454, 492, 649
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	3 cut(s)	150, 167, 630
EarI	CTCTTC	3 cut(s)	150, 167, 630
EcoRII	CCWGG	1 cut(s)	349
FaeI	CATG	2 cut(s)	134, 394
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	2 cut(s)	130, 390
FauI	CCCGC	1 cut(s)	162
FbaI	TGATCA	1 cut(s)	492
Fnu4HI	GCNGC	2 cut(s)	158, 645
FokI	GGATG	4 cut(s)	386, 524, 598, 736
Fsp4HI	GCNGC	2 cut(s)	158, 645
FspBI	CTAG	1 cut(s)	530
GluI	GCNGC	2 cut(s)	158, 645
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	1 cut(s)	452
HgaI	GACGC	1 cut(s)	747
Hin1II	CATG	2 cut(s)	134, 394
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	5 cut(s)	313, 352, 470, 502, 599
Hpy166II	GTNNAC	3 cut(s)	19, 39, 700
Hpy188I	TCNGA	6 cut(s)	54, 93, 175, 240, 381, 725
Hpy188III	TCNNGA	4 cut(s)	403, 415, 530, 667
Hpy8I	GTNNAC	3 cut(s)	19, 39, 700
Hpy99I	CGWCG	1 cut(s)	486
HpyAV	CCTTC	3 cut(s)	583, 680, 688
HpyCH4III	ACNGT	2 cut(s)	83, 482
HpyCH4V	TGCA	3 cut(s)	192, 209, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	3 cut(s)	92, 290, 370
Hsp92II	CATG	2 cut(s)	134, 394
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	4 cut(s)	198, 454, 492, 649
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	2 cut(s)	286, 751
Lsp1109I	GCAGC	2 cut(s)	169, 656
MaeI	CTAG	1 cut(s)	530
MaeIII	GTNAC	5 cut(s)	83, 95, 301, 340, 655
MalI	GATC	4 cut(s)	200, 456, 494, 651
MboI	GATC	4 cut(s)	198, 454, 492, 649
MboII	GAAGA	4 cut(s)	137, 154, 581, 647
MflI	RGATCY	3 cut(s)	198, 454, 649
MhlI	GDGCHC	1 cut(s)	79
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	2 cut(s)	385, 729
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	6 cut(s)	60, 99, 178, 468, 631, 676
Mox20I	TGGCCA	1 cut(s)	354
MroXI	GAANNNNTTC	2 cut(s)	59, 410
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	2 cut(s)	272, 754
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	1 cut(s)	452
MspR9I	CCNGG	2 cut(s)	351, 452
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	452
NdeII	GATC	4 cut(s)	198, 454, 492, 649
NlaIII	CATG	2 cut(s)	134, 394
NlaIV	GGNNCC	1 cut(s)	456
NmuCI	GTSAC	3 cut(s)	95, 301, 340
PciSI	GCTCTTC	1 cut(s)	167
PdmI	GAANNNNTTC	2 cut(s)	59, 410
PfoI	TCCNGGA	1 cut(s)	450
PkrI	GCNGC	2 cut(s)	159, 646
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	456
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	3 cut(s)	198, 454, 649
RsaI	GTAC	2 cut(s)	114, 398
RsaNI	GTAC	2 cut(s)	113, 397
RseI	CAYNNNNRTG	2 cut(s)	272, 754
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	2 cut(s)	158, 645
Sau3AI	GATC	4 cut(s)	198, 454, 492, 649
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	351, 452
SduI	GDGCHC	1 cut(s)	79
SfcI	CTRYAG	1 cut(s)	64
SmiMI	CAYNNNNRTG	2 cut(s)	272, 754
SmlI	CTYRAG	1 cut(s)	667
SmoI	CTYRAG	1 cut(s)	667
Sse9I	AATT	2 cut(s)	385, 729
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	2 cut(s)	349, 450
TaaI	ACNGT	2 cut(s)	83, 482
TaqI	TCGA	1 cut(s)	414
TasI	AATT	2 cut(s)	385, 729
TatI	WGTACW	1 cut(s)	396
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	2 cut(s)	46, 378
TseFI	GTSAC	3 cut(s)	95, 301, 340
TseI	GCWGC	2 cut(s)	157, 644
Tsp45I	GTSAC	3 cut(s)	95, 301, 340
TspDTI	ATGAA	4 cut(s)	137, 192, 407, 602
TspGWI	ACGGA	1 cut(s)	695
TspRI	CASTG	2 cut(s)	46, 378
XbaI	TCTAGA	1 cut(s)	529
XmnI	GAANNNNTTC	2 cut(s)	59, 410
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.