Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8330221.1

Orthogroup ID

OG0012895

Physical Location & Seq

Genomic Coordinates Reverse (-)

306 .. 791

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8330221.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgattggaatggagcttagggataaggtgacagagtatgtcaaggaaaggattttggctttaagggtgacaaatccgggtcaataccagaatatctcagtggttcgcactaattccatgaagtacatcccaaattactttgagaaagcacagctttcaaagatgtttttcctgttcccggatcctcacttcaaagagaaaaatcaccggcgtagggtgatcagtccattcttgctggatgagtatgcttatgctctagaagttggtggcattatatacacaataacagatgtcgaagaacttggagactggatgaaggcttgtttagaaaatcaccctatgtttgaagctctcacaagtgaagaggtcgaagcagatccagttacgaagctcttgagttctgcaactgaggaaggacagaaggtggacagaaacgggggacagactttccgagcaatttacagacgcattgctccatccctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008176 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0036265 GO:0043170 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0106004 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_4

Protein Analysis

161

Amino Acids

18.66

Weight (kDa)

5.97

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24840
fragaria_vesca	FvH4_2g36340
malus_domestica	MD08G1121000.v1.1 MD15G1100000.v1.1
prunus_persica	Prupe.1G454800_v2.0.a1
pyrus_communis	pycom08g10110 pycom15g09200
rosa_chinensis	RchiOBHm_Chr6g0305541
rosa_laevigata	RLG00000010878
rosa_multiflora	Rmu_co8330221.1_g000001 Rmu_sc0000841.1_g000004
rosa_roxburghii	Rroxscaffold_7G00162600
rosa_rugosa	Rorug06G0341500
rosa_samantha	Rh6AG453500 Rh6BG448100 Rh6CG467300 Rh6DG453900
rosa_wichuraiana	Rw6G039520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	176, 189, 371
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	178, 214
AgsI	TTSAA	3 cut(s)	159, 193, 347
AluBI	AGCT	4 cut(s)	16, 154, 350, 391
AluI	AGCT	4 cut(s)	16, 154, 350, 391
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	3 cut(s)	176, 189, 371
AsuC2I	CCSGG	2 cut(s)	78, 179
AsuHPI	GGTGA	5 cut(s)	40, 79, 197, 229, 326
BamHI	GGATCC	1 cut(s)	181
BccI	CCATC	1 cut(s)	484
BclI	TGATCA	1 cut(s)	219
BcnI	CCSGG	2 cut(s)	78, 179
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	1 cut(s)	257
Bme1390I	CCNGG	2 cut(s)	78, 179
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	2 cut(s)	78, 179
Bpu10I	CCTNAGC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	415
BpuMI	CCSGG	2 cut(s)	78, 179
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 214
Bse118I	RCCGGY	1 cut(s)	207
Bse1I	ACTGG	2 cut(s)	314, 380
Bse3DI	GCAATG	1 cut(s)	468
BseGI	GGATG	4 cut(s)	126, 244, 318, 476
BseLI	CCNNNNNNNGG	2 cut(s)	178, 214
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	2 cut(s)	111, 399
BseNI	ACTGG	2 cut(s)	314, 380
BsiSI	CCGG	3 cut(s)	77, 179, 208
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	2 cut(s)	178, 214
BsmAI	GTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	453
Bsp143I	GATC	3 cut(s)	181, 219, 376
BspCNI	CTCAG	2 cut(s)	110, 400
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	3 cut(s)	176, 189, 371
BsrDI	GCAATG	1 cut(s)	468
BsrFI	RCCGGY	1 cut(s)	207
BsrI	ACTGG	2 cut(s)	314, 380
BssAI	RCCGGY	1 cut(s)	207
BssMI	GATC	3 cut(s)	181, 219, 376
Bst6I	CTCTTC	1 cut(s)	357
BstDEI	CTNAG	3 cut(s)	17, 97, 408
BstF5I	GGATG	4 cut(s)	126, 244, 318, 476
BstKTI	GATC	3 cut(s)	184, 222, 379
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	3 cut(s)	181, 219, 376
BstSCI	CCNGG	2 cut(s)	76, 177
BstX2I	RGATCY	2 cut(s)	181, 376
BstYI	RGATCY	2 cut(s)	181, 376
BtsCI	GGATG	4 cut(s)	126, 244, 318, 476
BtsIMutI	CAGTG	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	207
CseI	GACGC	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	6 cut(s)	16, 59, 154, 320, 350, 391
CviKI_1	RGCY	6 cut(s)	16, 59, 154, 320, 350, 391
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	3 cut(s)	17, 97, 408
DpnI	GATC	3 cut(s)	183, 221, 378
DpnII	GATC	3 cut(s)	181, 219, 376
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
FaeI	CATG	1 cut(s)	121
FaiI	YATR	8 cut(s)	39, 119, 246, 252, 275, 277, 341, 484
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	1 cut(s)	117
FbaI	TGATCA	1 cut(s)	219
FokI	GGATG	4 cut(s)	113, 251, 325, 463
FspBI	CTAG	1 cut(s)	257
HapII	CCGG	3 cut(s)	77, 179, 208
HgaI	GACGC	1 cut(s)	474
Hin1II	CATG	1 cut(s)	121
HpaII	CCGG	3 cut(s)	77, 179, 208
HphI	GGTGA	5 cut(s)	40, 79, 197, 229, 326
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	1 cut(s)	452
Hpy188III	TCNNGA	2 cut(s)	257, 394
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	3 cut(s)	310, 407, 415
HpyCH4V	TGCA	1 cut(s)	404
HpyF3I	CTNAG	3 cut(s)	17, 97, 408
Hsp92II	CATG	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	3 cut(s)	181, 219, 376
LmnI	GCTCC	2 cut(s)	13, 478
LpnPI	CCDG	8 cut(s)	90, 101, 185, 192, 221, 221, 295, 393
MaeI	CTAG	1 cut(s)	257
MaeIII	GTNAC	3 cut(s)	28, 67, 382
MalI	GATC	3 cut(s)	183, 221, 378
MboI	GATC	3 cut(s)	181, 219, 376
MboII	GAAGA	2 cut(s)	308, 374
MflI	RGATCY	2 cut(s)	181, 376
MluCI	AATT	3 cut(s)	112, 133, 456
MnlI	CCTC	3 cut(s)	195, 358, 403
MseI	TTAA	1 cut(s)	62
MslI	CAYNNNNRTG	1 cut(s)	481
MspI	CCGG	3 cut(s)	77, 179, 208
MspR9I	CCNGG	2 cut(s)	78, 179
NciI	CCSGG	2 cut(s)	78, 179
NdeII	GATC	3 cut(s)	181, 219, 376
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	2 cut(s)	28, 67
PfoI	TCCNGGA	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	183
PsuI	RGATCY	2 cut(s)	181, 376
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	481
SaqAI	TTAA	1 cut(s)	62
Sau3AI	GATC	3 cut(s)	181, 219, 376
ScrFI	CCNGG	2 cut(s)	78, 179
SetI	ASST	7 cut(s)	18, 30, 156, 352, 369, 393, 426
SgrAI	CRCCGGYG	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
Sse9I	AATT	3 cut(s)	112, 133, 456
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	76, 177
TaqI	TCGA	2 cut(s)	294, 369
TasI	AATT	3 cut(s)	112, 133, 456
TatI	WGTACW	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	2 cut(s)	28, 67
Tsp45I	GTSAC	2 cut(s)	28, 67
TspDTI	ATGAA	2 cut(s)	134, 329
TspRI	CASTG	1 cut(s)	105
XbaI	TCTAGA	1 cut(s)	256
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.