Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012895

Physical Location & Seq

Genomic Coordinates Reverse (-)

5923459 .. 5924465

Gene Structure 1007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g09200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGTTTATACATTGCTCGCAATTATTCTCTTCATTACCCGCAATACTTCCCCTCATCCGATCAAGTTGATAGCTGTAAGATCGATCCAGTTTGCAGATATCGGTTGTGGTTTTGGGGTTCTGATAAGTCTGTCAACCCTTTTCCCCGAGACTTTGATAATCGGAATGGAGCTTAGGGATAAGGTGACAGAGTACGTGAAGGAAAGGATCTTGGCATTAAGGGTGACAAATCCGGGTCAATACCAAAATATCTCAGTCGTTCGGACTAATTCCATGAAATACATTCCAAACTACTTTGAGAAAGGGCAGTTTTCAAAGACGTTTTTCCTGTTCCCGGAGCCTCACTTCAAAGAGAAAAATCATCGGCGTGGAGTGATCAGTCCTTTCTTGCTGGACGAGTATGCTTATGGTCTAGAAGGCGGTGGGATCATGTACACAATTACGGATGTTGAGGAACTCGGAGACTGGATGAAGACTTGCTTGGAGAATCACCCCATGTTTGAAGCTCTCACCGACGAAGAGCTCAACGCAGATCCAGTTACGAAGCTCTTGAGTTCTGCAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008176 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0036265 GO:0043170 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0106004 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_4

Protein Analysis

189

Amino Acids

21.41

Weight (kDa)

5.59

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24840
fragaria_vesca	FvH4_2g36340
malus_domestica	MD08G1121000.v1.1 MD15G1100000.v1.1
prunus_persica	Prupe.1G454800_v2.0.a1
pyrus_communis	pycom08g10110 pycom15g09200
rosa_chinensis	RchiOBHm_Chr6g0305541
rosa_laevigata	RLG00000010878
rosa_multiflora	Rmu_co8330221.1_g000001 Rmu_sc0000841.1_g000004
rosa_roxburghii	Rroxscaffold_7G00162600
rosa_rugosa	Rorug06G0341500
rosa_samantha	Rh6AG453500 Rh6BG448100 Rh6CG467300 Rh6DG453900
rosa_wichuraiana	Rw6G039520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	40, 420
AclWI	GGATC	4 cut(s)	79, 215, 434, 527
AfaI	GTAC	2 cut(s)	194, 434
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	3 cut(s)	315, 349, 503
AjuI	GAANNNNNNNTTGG	2 cut(s)	464, 496
AluBI	AGCT	5 cut(s)	74, 172, 506, 523, 547
AluI	AGCT	5 cut(s)	74, 172, 506, 523, 547
Alw21I	GWGCWC	1 cut(s)	525
Alw26I	GTCTC	2 cut(s)	143, 456
AlwI	GGATC	4 cut(s)	79, 215, 434, 527
Ama87I	CYCGRG	1 cut(s)	146
AsuC2I	CCSGG	2 cut(s)	234, 335
AsuHPI	GGTGA	4 cut(s)	196, 235, 482, 502
AvaI	CYCGRG	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	479
Bbv12I	GWGCWC	1 cut(s)	525
BclI	TGATCA	1 cut(s)	375
BcnI	CCSGG	2 cut(s)	234, 335
BcoDI	GTCTC	2 cut(s)	143, 456
BfaI	CTAG	1 cut(s)	413
Bme1390I	CCNGG	2 cut(s)	234, 335
BmeT110I	CYCGRG	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	2 cut(s)	234, 335
BpiI	GAAGAC	1 cut(s)	479
Bpu10I	CCTNAGC	1 cut(s)	173
BpuMI	CCSGG	2 cut(s)	234, 335
Bsa29I	ATCGAT	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse1I	ACTGG	3 cut(s)	88, 470, 536
Bse3DI	GCAATG	1 cut(s)	11
BseCI	ATCGAT	1 cut(s)	83
BseGI	GGATG	3 cut(s)	55, 451, 474
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	3 cut(s)	88, 470, 536
BshVI	ATCGAT	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	525
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	233, 335
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	2 cut(s)	143, 456
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp1407I	TGTACA	1 cut(s)	432
Bsp143I	GATC	7 cut(s)	60, 80, 84, 207, 375, 426, 532
BspACI	CCGC	2 cut(s)	40, 420
BspCNI	CTCAG	1 cut(s)	266
BspDI	ATCGAT	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	4 cut(s)	79, 215, 434, 527
BspQI	GCTCTTC	1 cut(s)	513
BsrDI	GCAATG	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	432
BsrI	ACTGG	3 cut(s)	88, 470, 536
BssMI	GATC	7 cut(s)	60, 80, 84, 207, 375, 426, 532
Bst6I	CTCTTC	2 cut(s)	35, 513
BstAUI	TGTACA	1 cut(s)	432
BstBAI	YACGTR	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	173, 253
BstF5I	GGATG	3 cut(s)	55, 451, 474
BstKTI	GATC	7 cut(s)	63, 83, 87, 210, 378, 429, 535
BstMAI	GTCTC	2 cut(s)	143, 456
BstMBI	GATC	7 cut(s)	60, 80, 84, 207, 375, 426, 532
BstSCI	CCNGG	2 cut(s)	232, 333
BstV2I	GAAGAC	1 cut(s)	479
BstX2I	RGATCY	2 cut(s)	207, 532
BstYI	RGATCY	2 cut(s)	207, 532
Bsu15I	ATCGAT	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	83
BtsCI	GGATG	3 cut(s)	55, 451, 474
Cac8I	GCNNGC	1 cut(s)	18
ClaI	ATCGAT	1 cut(s)	83
Csp6I	GTAC	2 cut(s)	193, 433
CviAII	CATG	3 cut(s)	274, 430, 496
CviJI	RGCY	6 cut(s)	74, 172, 340, 506, 523, 547
CviKI_1	RGCY	6 cut(s)	74, 172, 340, 506, 523, 547
CviQI	GTAC	2 cut(s)	193, 433
DdeI	CTNAG	2 cut(s)	173, 253
DpnI	GATC	7 cut(s)	62, 82, 86, 209, 377, 428, 534
DpnII	GATC	7 cut(s)	60, 80, 84, 207, 375, 426, 532
Eam1104I	CTCTTC	2 cut(s)	35, 513
EarI	CTCTTC	2 cut(s)	35, 513
Ecl136II	GAGCTC	1 cut(s)	523
Eco24I	GRGCYC	1 cut(s)	525
Eco32I	GATATC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	523
Eco88I	CYCGRG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	523
EcoRV	GATATC	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	525
FaeI	CATG	3 cut(s)	277, 433, 499
FaiI	YATR	6 cut(s)	9, 275, 402, 408, 431, 497
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FatI	CATG	3 cut(s)	273, 429, 495
FauI	CCCGC	1 cut(s)	47
FbaI	TGATCA	1 cut(s)	375
FokI	GGATG	3 cut(s)	42, 458, 481
FriOI	GRGCYC	1 cut(s)	525
FspBI	CTAG	1 cut(s)	413
HapII	CCGG	2 cut(s)	233, 335
Hin1II	CATG	3 cut(s)	277, 433, 499
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	1 cut(s)	487
HpaII	CCGG	2 cut(s)	233, 335
HphI	GGTGA	4 cut(s)	196, 235, 482, 502
Hpy166II	GTNNAC	2 cut(s)	135, 435
Hpy188I	TCNGA	5 cut(s)	60, 123, 164, 264, 461
Hpy188III	TCNNGA	2 cut(s)	413, 550
Hpy8I	GTNNAC	2 cut(s)	135, 435
Hpy99I	CGWCG	1 cut(s)	518
HpyAV	CCTTC	2 cut(s)	193, 410
HpyCH4IV	ACGT	3 cut(s)	195, 320, 563
HpyCH4V	TGCA	2 cut(s)	95, 560
HpyF3I	CTNAG	2 cut(s)	173, 253
HpySE526I	ACGT	3 cut(s)	195, 320, 563
Hsp92II	CATG	3 cut(s)	277, 433, 499
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	7 cut(s)	60, 80, 84, 207, 375, 426, 532
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	2 cut(s)	169, 337
LpnPI	CCDG	7 cut(s)	101, 246, 341, 348, 377, 451, 549
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	3 cut(s)	195, 320, 563
MaeIII	GTNAC	3 cut(s)	184, 223, 538
MalI	GATC	7 cut(s)	62, 82, 86, 209, 377, 428, 534
MboI	GATC	7 cut(s)	60, 80, 84, 207, 375, 426, 532
MboII	GAAGA	3 cut(s)	22, 484, 530
MflI	RGATCY	2 cut(s)	207, 532
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	3 cut(s)	21, 268, 438
MnlI	CCTC	3 cut(s)	63, 351, 445
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	2 cut(s)	233, 335
MspR9I	CCNGG	2 cut(s)	234, 335
NciI	CCSGG	2 cut(s)	234, 335
NdeII	GATC	7 cut(s)	60, 80, 84, 207, 375, 426, 532
NlaIII	CATG	3 cut(s)	277, 433, 499
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	2 cut(s)	184, 223
PciSI	GCTCTTC	1 cut(s)	513
PfeI	GAWTC	1 cut(s)	487
PfoI	TCCNGGA	1 cut(s)	333
Ppu21I	YACGTR	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	525
PspN4I	GGNNCC	1 cut(s)	339
PsuI	RGATCY	2 cut(s)	207, 532
RsaI	GTAC	2 cut(s)	194, 434
RsaNI	GTAC	2 cut(s)	193, 433
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	525
SapI	GCTCTTC	1 cut(s)	513
SaqAI	TTAA	1 cut(s)	218
Sau3AI	GATC	7 cut(s)	60, 80, 84, 207, 375, 426, 532
ScrFI	CCNGG	2 cut(s)	234, 335
SduI	GDGCHC	1 cut(s)	525
SetI	ASST	9 cut(s)	76, 174, 186, 198, 323, 508, 525, 549, 566
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
Sse9I	AATT	3 cut(s)	21, 268, 438
SsiI	CCGC	2 cut(s)	40, 420
SspMI	CTAG	1 cut(s)	413
SstI	GAGCTC	1 cut(s)	525
StyD4I	CCNGG	2 cut(s)	232, 333
TaiI	ACGT	3 cut(s)	198, 323, 566
TaqI	TCGA	1 cut(s)	83
TasI	AATT	3 cut(s)	21, 268, 438
TatI	WGTACW	1 cut(s)	432
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TseFI	GTSAC	2 cut(s)	184, 223
Tsp45I	GTSAC	2 cut(s)	184, 223
TspDTI	ATGAA	3 cut(s)	22, 290, 485
TspGWI	ACGGA	1 cut(s)	458
XbaI	TCTAGA	1 cut(s)	412
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.