Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007452

Physical Location & Seq

Genomic Coordinates Forward (+)

25312746 .. 25319788

Gene Structure 7043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1196200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3375 bp

ATGCATGTGGCTGGGGATCTAGGGTTTCGGAGCCTCGTGCTGGTGGCTTGTTTTCTGGCGCCGGTGATCGGATTCTTCGTGGTTCGGAGAAAATGGCGCCTCGCAAACGCCAGGAGGGAGGAGATCAGGAGACTTTTGGTCTTGGCCAAGGAGGAAGCTGCTAGAGCTGAGTTCGAGGTCACGGCTGGGTACGGCGCCGCTTCGGTGGCTGAGATTAAGGGTCCTTATTGCGTTGTTTGTTACTGCCCCACCACCACGCGCTGCGCCCGCTGCAAAGCGGTTCGCTACTGTTCTGGGAAGTGTCAAATTGTTCACTGGCGACAAGGTCACAAGGAAGAGTGCCGTCCTTCTACCATAGTTCACCAGAATATTGATGTGGGAAGTGATTCTGGCCTGAAGGTAACCAAAGAAGACCTTGAAATTAATACCGACAAGTTTCAAAGCAGGCAGTCTGTTGAAAAATCTTCTGAGGAACCTGCATTGCCTAATCCTCATTGCTTTCCCGATGTTGAATGTATAAGGGATGATGATAGTGAAGATGAATTTCTTGCCGAGAGGAAAGGAACAAATTGTACATCTGACTCAGCAGCTACCTCTTTTTCTGGATTTTCTACTTCTGCCAGCGGTACTGAATCTTCAGACGATGTTTCTGTCAGTGGGAGTGTTAGTTCATTTGAACCTGACAGATCAGATGGGCAACCATCCGCTAATGATGCCTTTGACATCCATCAGATTCCCTTTAATGTTAACAACATCGATCAATCTAAGCCATCATCTCCAAAGTTTGCTAGCTTGGTTGATTCTGTTGATGGTTTTGCTAAGTTAAGTAAGTTGAATCAGGTTAAACCTAGTATTAATGATGAAGAAAATGAGCAGAGATCAAATTTTTCTTCACGTTTGAACGACAGTGGCATGAGTGAGGGTCCAGTTGCTGAGTCTTGTACACCTTCCTCTGATTTCTGGGGGAACACTCTTGATTCCCTAGGGTCCAGGAGTGATGCCCAAGTGTCCAATTCCAGTGTAGCGAGTAATAGAAAGATATCTGATTCTGGAGATTCCTTACATTTTTCATTCAACTTGTCTGGAATTACTGCAGCTCCCCTTCATAGACTAGGCTCCAAGTCAAGGGGCACGAGGTTAGGTGATGATCTTCTAGATTCTTCGGAGCTCAGTAAGTCTACTCATGGAGCAGATTTATCAGAAAAGATTAGTGGAGATGCTGTTAAGGTCAAGAATTCCCCATCACAGAACAGTAAAGGGTCGAAAAAAGAGGATAATGAATCTAGCAGTAATTCACATGCCTTGAAGTTCAGAGAAATTAAGTCTATGTCATCCTCCTCGCCTTCAGTTCATAGATCTCTTGGCACTGAAAGAGTTTCAAAAAGCACAGATGCTCTGAACTCTAGTAGAGTGCTATCCACAAGTTCAGAAAGGTCAGGTCATGCTGTTAAGAACTGCAGCAGAACTTCTGATGTTTTAAAGTCTAGGGAAGCTGGAACTCCATCACCCAGTGTTTCTGATGCTCGCCTTGCATCTGCTGTTGGAGGCGCACTTCCACGTGTAAAATCTGGAAAAGTGGACTGTGTTGAGGCTAGTGATACTGTTTCATCTCAAGCCACAAATATTTCAAATGATAGGAATGGCTTGAAAACCTCTGTATTTAAGGTTTTCGACCAGTTTAGAGGATCCAAAATACCAAAGCACTATCCTTCAGGAGTTGGGAGTGAGATTGCAGGAAAATATAGCGAGAAGGAACTTTTTTCGTATGAATTATTTGTCAAGCTTTACAATTGGAACAAGGTGGAATTGCGCCCTTCTGGCCTTATAAATTGCGGTAACAGCTGTTATGCCAATGCAGTGCTACAGTGCTTGTCATTTACTCCACCTCTGACTGCTTATTTGCTTCAAGGACTCCATTCTAAAGATTGTGTAAAGAAGGGATGGTGTTTCATGTGTGAGTTCGAAAGTCTAGTTTCAATGGCAAAGGACTCTCCTCTGTCTCCTATGGGAATCTTTTCCCAGTTAAGAAAAATTGGAAGTCAACTTGGTAATGGGAGAGAAGAAGATGCCCATGAATTTCTAAGGTATGCAATTGACATGATGCAATCTGTTTGCCTTACGGAAACTGGGGTTAATTCATCGTGCTCTTTGAACGAAGAAACAACTTTAATAGGCCTTACATTTGGAGGCTACCTTCGATCAAAGATAAAATGCACAAAGTGCCAAGGCAAGTCTGAGCGGCAGGAAAGAATGATGGATCTTACTGTAGAGATTGAGGGTGATATAGGAACCCTGGAAGAGGCTCTTCGTCGATTTACGGGTACTGAGACCTTGGATGGGGAGAACAAATACCAATGTAGCAGTTGCAAATCTTATGAGAAGGCCAAAAAGAAGTTGACAATACTGGAAGCTCCAAATATCCTTACAATTGCACTAAAGCGTTTTCAGTCTGGTAAGTTTGGGAAGATCAATAAGCCTATCCGTTTTCCTGAGATCCTGGACTTGGCACCTTTTATGAGTGGTACAAGTGATAAATCGCCTATATACAGACTTTACGGGGTGGTTGTGCACTTAGATATCATGAATGCGGCATTTTCTGGTCACTACGTGTGCTATGTCAGGAATTCCCACAACAAGTGGTTCAAGGTTGATGACAGCACGGTAACCCCTGTGGAACTTGAAAAGGTCTTGATGAAAGGCGCTTACATGCTTCTTTATTCAAGATGCTTGCCAAGGGCCCCGAGATTGATAAGGAACAGAATTATATCTAATGATCCCAAACATCGAGCCATTCCTTCTTGGATCGGTGGAAGGGCTACCAACTTGAAACCCAAATCTGTCTCCAGACTCTCCACACATTCTGGTGTTGACCATTCCGTACCCAATGCATATCCACCAGAGGAGCTGCGAAGGATTTTGGAAGAGGACTCATCAAGTGACAATTCTTCCCTTATCAGCAACAACTCCGACGAAAGTTCTATTAGTACTGGTAGTACTTGTTGCTCTACCAGCACCGATGACTTGTCCGATTACATATTTGGTCATTCAGGGCGTGGTTGGAGTAGCTCCTGGAGAAATTTTTCGGATTCCGACACTTCTTCCTCATCCTCTTCCTCACCCTCGAGTACTAAGCATTCACCCCTCTCTGATTCGAACAGGTACGCTTCAGTTTCCCCTGAAACTATTGGGAGTAGCAAGCCAGCAGATTCGGATGGCGCAGTGACGGTTACTTTTTTGCACTCTGATACCAGTAAACAATGTAGAAGGCTAGCAAGTAGTAGTAGTAGAAATAGGGAAACCGGCACGGAGAGATTAGGACCCGACTCTTTGGGGGATGTAAAATTTAGAAAATCAATAGTAGAGAAAGAACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008283 GO:0009628 GO:0009651 GO:0009791 GO:0009908 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048364 GO:0048366 GO:0048367 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080134 GO:0090567 GO:0099402 GO:0101005 GO:0140096 GO:1901000 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

1125

Amino Acids

122.66

Weight (kDa)

7.94

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-MYND	PF01753	77 - 114	4.4e-07	MYND finger
UCH_1	PF13423	606 - 888	1e-22	Ubiquitin carboxyl-terminal hydrolase
UCH	PF00443	607 - 906	4e-54	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24560
fragaria_vesca	FvH4_5g35500 FvH4_5g35500 FvH4_5g35500 FvH4_5g35500
malus_domestica	MD08G1196200.v1.1 MD15G1384000.v1.1
prunus_persica	Prupe.1G530100_v2.0.a1 Prupe.1G530100_v2.0.a1
pyrus_communis	pycom08g16850 pycom15g34370
rosa_chinensis	RchiOBHm_Chr7g0236881
rosa_laevigata	RLG00000001053
rosa_multiflora	Rmu_co8158526.1_g000001 Rmu_sc0002867.1_g000006 Rmu_sc0017481.1_g000004 Rmu_sc0032933.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224730
rosa_rugosa	Rorug07G0300500 Rorug07G0300600
rosa_samantha	Rh7AG455400 Rh7BG426600 Rh7CG474200 Rh7DG443400
rosa_wichuraiana	Rw7G037810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1826
Acc36I	ACCTGC	1 cut(s)	484
AccB1I	GGYRCC	4 cut(s)	58, 96, 194, 2506
AccBSI	CCGCTC	1 cut(s)	2239
AccI	GTMKAC	1 cut(s)	1178
AccII	CGCG	1 cut(s)	259
AciI	CCGC	8 cut(s)	198, 268, 278, 624, 705, 1833, 2239, 2588
AclWI	GGATC	7 cut(s)	24, 1680, 1693, 2265, 2488, 2768, 2810
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	7 cut(s)	542, 883, 1234, 2075, 2623, 3076, 3341
AcuI	CTGAAG	5 cut(s)	416, 621, 1329, 1695, 3150
AcvI	CACGTG	1 cut(s)	1559
AcyI	GRCGYC	3 cut(s)	59, 97, 195
AdeI	CACNNNGTG	3 cut(s)	1511, 2220, 2608
AfiI	CCNNNNNNNGG	6 cut(s)	40, 68, 1125, 2299, 2337, 2503
AflIII	ACRYGT	2 cut(s)	1558, 2607
AhdI	GACNNNNNGTC	1 cut(s)	137
AjnI	CCWGG	5 cut(s)	110, 989, 2292, 2496, 3068
AloI	GAACNNNNNNTCC	2 cut(s)	652, 684
Alw21I	GWGCWC	3 cut(s)	1170, 2147, 2571
Alw26I	GTCTC	4 cut(s)	124, 2004, 2321, 2845
Alw44I	GTGCAC	1 cut(s)	2567
AlwI	GGATC	7 cut(s)	24, 1680, 1693, 2265, 2488, 2768, 2810
AlwNI	CAGNNNCTG	1 cut(s)	932
Ama87I	CYCGRG	2 cut(s)	2740, 3121
AoxI	GGCC	6 cut(s)	144, 391, 1819, 2173, 2382, 2736
ApaI	GGGCCC	1 cut(s)	2740
ApaLI	GTGCAC	1 cut(s)	2567
ApeKI	GCWGC	7 cut(s)	158, 261, 270, 587, 1094, 1458, 2905
ApoI	RAATTY	7 cut(s)	542, 883, 1234, 2075, 2623, 3076, 3341
ArsI	GACNNNNNNTTYG	2 cut(s)	1882, 1914
AseI	ATTAAT	2 cut(s)	423, 855
Asp700I	GAANNNNTTC	3 cut(s)	385, 2014, 3079
AspA2I	CCTAGG	1 cut(s)	982
AspLEI	GCGC	9 cut(s)	61, 99, 197, 261, 266, 1550, 1812, 2702, 3218
AspS9I	GGNCC	6 cut(s)	221, 923, 987, 2736, 2737, 3317
AsuHPI	GGTGA	7 cut(s)	76, 353, 1154, 1497, 2291, 3108, 3129
AsuII	TTCGAA	2 cut(s)	1962, 3152
AsuNHI	GCTAGC	2 cut(s)	788, 3268
AvaI	CYCGRG	2 cut(s)	2740, 3121
AvaII	GGWCC	4 cut(s)	221, 923, 987, 3317
AvrII	CCTAGG	1 cut(s)	982
BaeGI	GKGCMC	3 cut(s)	1133, 2571, 2740
BalI	TGGCCA	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	1685
BanI	GGYRCC	4 cut(s)	58, 96, 194, 2506
BanII	GRGCYC	2 cut(s)	1170, 2740
BarI	GAAGNNNNNNTAC	2 cut(s)	619, 651
BauI	CACGAG	2 cut(s)	35, 1132
BbrPI	CACGTG	1 cut(s)	1559
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	3 cut(s)	1170, 2147, 2571
BbvI	GCAGC	7 cut(s)	145, 248, 257, 599, 1106, 1470, 2892
BceAI	ACGGC	3 cut(s)	198, 208, 327
BciT130I	CCWGG	5 cut(s)	112, 991, 2294, 2498, 3070
BcoDI	GTCTC	4 cut(s)	124, 2004, 2321, 2845
BfmI	CTRYAG	4 cut(s)	1092, 1456, 1862, 2265
BfoI	RGCGCY	4 cut(s)	62, 100, 198, 2703
BfuAI	ACCTGC	1 cut(s)	484
BglI	GCCNNNNNGGC	1 cut(s)	1818
BglII	AGATCT	1 cut(s)	1355
BlnI	CCTAGG	1 cut(s)	982
BmcAI	AGTACT	3 cut(s)	2986, 2995, 3127
Bme1390I	CCNGG	5 cut(s)	112, 991, 2294, 2498, 3070
Bme18I	GGWCC	4 cut(s)	221, 923, 987, 3317
BmeRI	GACNNNNNGTC	1 cut(s)	137
BmeT110I	CYCGRG	2 cut(s)	2740, 3121
BmgT120I	GGNCC	6 cut(s)	221, 923, 987, 2736, 2737, 3317
BmrFI	CCNGG	5 cut(s)	112, 991, 2294, 2498, 3070
BmrI	ACTGGG	3 cut(s)	1503, 2014, 2136
BmsI	GCATC	9 cut(s)	703, 988, 1207, 1381, 1510, 1541, 2056, 2091, 2714
BmtI	GCTAGC	2 cut(s)	792, 3272
BmuI	ACTGGG	3 cut(s)	1503, 2014, 2136
BpiI	GAAGAC	1 cut(s)	417
BpmI	CTGGAG	3 cut(s)	1071, 2827, 3091
Bpu14I	TTCGAA	2 cut(s)	1962, 3152
BpuEI	CTTGAG	1 cut(s)	1596
Bsa29I	ATCGAT	1 cut(s)	756
BsaAI	YACGTR	2 cut(s)	1559, 2608
BsaHI	GRCGYC	3 cut(s)	59, 97, 195
BsaI	GGTCTC	1 cut(s)	2321
BsaJI	CCNNGG	6 cut(s)	147, 982, 2224, 2292, 2331, 2732
BsaXI	ACNNNNNCTCC	6 cut(s)	652, 682, 1081, 1111, 1206, 1236
Bsc4I	CCNNNNNNNGG	6 cut(s)	40, 68, 1125, 2299, 2337, 2503
Bse118I	RCCGGY	2 cut(s)	61, 3299
Bse3DI	GCAATG	2 cut(s)	479, 493
BseBI	CCWGG	5 cut(s)	112, 991, 2294, 2498, 3070
BseCI	ATCGAT	1 cut(s)	756
BseDI	CCNNGG	6 cut(s)	147, 982, 2224, 2292, 2331, 2732
BseGI	GGATG	9 cut(s)	529, 701, 723, 1331, 1946, 2341, 3104, 3217, 3340
BseLI	CCNNNNNNNGG	6 cut(s)	40, 68, 1125, 2299, 2337, 2503
BseMI	GCAATG	2 cut(s)	479, 493
BseMII	CTCAG	9 cut(s)	159, 201, 459, 597, 924, 1183, 2226, 2316, 2481
BseRI	GAGGAG	4 cut(s)	134, 1327, 1983, 2915
BseSI	GKGCMC	3 cut(s)	1133, 2571, 2740
BseXI	GCAGC	7 cut(s)	145, 248, 257, 599, 1106, 1470, 2892
BseYI	CCCAGC	2 cut(s)	11, 185
Bsh1236I	CGCG	1 cut(s)	259
BshFI	GGCC	6 cut(s)	146, 393, 1821, 2175, 2384, 2738
BshNI	GGYRCC	4 cut(s)	58, 96, 194, 2506
BshVI	ATCGAT	1 cut(s)	756
BsiHKAI	GWGCWC	3 cut(s)	1170, 2147, 2571
BsiHKCI	CYCGRG	2 cut(s)	2740, 3121
BsiSI	CCGG	2 cut(s)	62, 3300
BslI	CCNNNNNNNGG	6 cut(s)	40, 68, 1125, 2299, 2337, 2503
BsmAI	GTCTC	4 cut(s)	124, 2004, 2321, 2845
BsmI	GAATGC	2 cut(s)	2590, 3133
BsnI	GGCC	6 cut(s)	146, 393, 1821, 2175, 2384, 2738
Bso31I	GGTCTC	1 cut(s)	2321
BsoBI	CYCGRG	2 cut(s)	2740, 3121
Bsp119I	TTCGAA	2 cut(s)	1962, 3152
Bsp120I	GGGCCC	1 cut(s)	2736
Bsp1286I	GDGCHC	5 cut(s)	1133, 1170, 2147, 2571, 2740
Bsp1407I	TGTACA	2 cut(s)	572, 941
BspACI	CCGC	8 cut(s)	198, 268, 278, 624, 705, 1833, 2239, 2588
BspANI	GGCC	6 cut(s)	146, 393, 1821, 2175, 2384, 2738
BspCNI	CTCAG	9 cut(s)	160, 202, 460, 596, 925, 1182, 2227, 2317, 2482
BspDI	ATCGAT	1 cut(s)	756
BspFNI	CGCG	1 cut(s)	259
BspHI	TCATGA	1 cut(s)	2580
BspMAI	CTGCAG	2 cut(s)	1096, 1460
BspMI	ACCTGC	1 cut(s)	484
BspOI	GCTAGC	2 cut(s)	792, 3272
BspPI	GGATC	7 cut(s)	24, 1680, 1693, 2265, 2488, 2768, 2810
BspQI	GCTCTTC	1 cut(s)	2310
BspT104I	TTCGAA	2 cut(s)	1962, 3152
BspT107I	GGYRCC	4 cut(s)	58, 96, 194, 2506
BspTNI	GGTCTC	1 cut(s)	2321
BsrBI	CCGCTC	1 cut(s)	2239
BsrDI	GCAATG	2 cut(s)	479, 493
BsrFI	RCCGGY	2 cut(s)	61, 3299
BsrGI	TGTACA	2 cut(s)	572, 941
BssAI	RCCGGY	2 cut(s)	61, 3299
BssECI	CCNNGG	6 cut(s)	147, 982, 2224, 2292, 2331, 2732
BssNI	GRCGYC	3 cut(s)	59, 97, 195
BssSI	CACGAG	2 cut(s)	35, 1132
BssT1I	CCWWGG	5 cut(s)	147, 982, 2224, 2331, 2732
Bst2BI	CACGAG	2 cut(s)	35, 1132
Bst2UI	CCWGG	5 cut(s)	112, 991, 2294, 2498, 3070
Bst6I	CTCTTC	5 cut(s)	330, 2292, 2310, 2916, 3115
BstACI	GRCGYC	3 cut(s)	59, 97, 195
BstAPI	GCANNNNNTGC	1 cut(s)	2220
BstAUI	TGTACA	2 cut(s)	572, 941
BstBAI	YACGTR	2 cut(s)	1559, 2608
BstBI	TTCGAA	2 cut(s)	1962, 3152
BstC8I	GCNNGC	9 cut(s)	268, 446, 622, 790, 1525, 2729, 3197, 3201, 3270
BstEII	GGTNACC	2 cut(s)	400, 2662
BstENI	CCTNNNNNAGG	1 cut(s)	2297
BstF5I	GGATG	9 cut(s)	529, 701, 723, 1331, 1946, 2341, 3104, 3217, 3340
BstFNI	CGCG	1 cut(s)	259
BstH2I	RGCGCY	4 cut(s)	62, 100, 198, 2703
BstHHI	GCGC	9 cut(s)	61, 99, 197, 261, 266, 1550, 1812, 2702, 3218
BstMAI	GTCTC	4 cut(s)	124, 2004, 2321, 2845
BstNI	CCWGG	5 cut(s)	112, 991, 2294, 2498, 3070
BstNSI	RCATGY	3 cut(s)	8, 1301, 2710
BstPI	GGTNACC	2 cut(s)	400, 2662
BstSCI	CCNGG	5 cut(s)	110, 989, 2292, 2496, 3068
BstSFI	CTRYAG	4 cut(s)	1092, 1456, 1862, 2265
BstSLI	GKGCMC	3 cut(s)	1133, 2571, 2740
BstUI	CGCG	1 cut(s)	259
BstV1I	GCAGC	7 cut(s)	145, 248, 257, 599, 1106, 1470, 2892
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	5 cut(s)	16, 1355, 1685, 2257, 2493
BstYI	RGATCY	5 cut(s)	16, 1355, 1685, 2257, 2493
Bsu15I	ATCGAT	1 cut(s)	756
BsuRI	GGCC	6 cut(s)	146, 393, 1821, 2175, 2384, 2738
BsuTUI	ATCGAT	1 cut(s)	756
BtsCI	GGATG	9 cut(s)	529, 701, 723, 1331, 1946, 2341, 3104, 3217, 3340
BtsI	GCAGTG	2 cut(s)	1863, 3225
BtsIMutI	CAGTG	9 cut(s)	313, 661, 913, 1024, 1365, 1516, 1863, 1871, 3225
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	9 cut(s)	268, 446, 622, 790, 1525, 2729, 3197, 3201, 3270
CaiI	CAGNNNCTG	1 cut(s)	932
CciI	TCATGA	1 cut(s)	2580
CfoI	GCGC	9 cut(s)	61, 99, 197, 261, 266, 1550, 1812, 2702, 3218
Cfr10I	RCCGGY	2 cut(s)	61, 3299
Cfr13I	GGNCC	6 cut(s)	221, 923, 987, 2736, 2737, 3317
ClaI	ATCGAT	1 cut(s)	756
DinI	GGCGCC	3 cut(s)	60, 98, 196
DraI	TTTAAA	1 cut(s)	1479
DraIII	CACNNNGTG	3 cut(s)	1511, 2220, 2608
DriI	GACNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	5 cut(s)	330, 2292, 2310, 2916, 3115
Eam1105I	GACNNNNNGTC	1 cut(s)	137
EarI	CTCTTC	5 cut(s)	330, 2292, 2310, 2916, 3115
Ecl136II	GAGCTC	1 cut(s)	1168
Eco130I	CCWWGG	5 cut(s)	147, 982, 2224, 2331, 2732
Eco147I	AGGCCT	1 cut(s)	2175
Eco24I	GRGCYC	2 cut(s)	1170, 2740
Eco31I	GGTCTC	1 cut(s)	2321
Eco32I	GATATC	2 cut(s)	1041, 2578
Eco47I	GGWCC	4 cut(s)	221, 923, 987, 3317
Eco53kI	GAGCTC	1 cut(s)	1168
Eco57I	CTGAAG	5 cut(s)	416, 621, 1329, 1695, 3150
Eco72I	CACGTG	1 cut(s)	1559
Eco88I	CYCGRG	2 cut(s)	2740, 3121
Eco91I	GGTNACC	2 cut(s)	400, 2662
EcoICRI	GAGCTC	1 cut(s)	1168
EcoNI	CCTNNNNNAGG	1 cut(s)	2297
EcoO109I	RGGNCCY	4 cut(s)	221, 2736, 2737, 3317
EcoO65I	GGTNACC	2 cut(s)	400, 2662
EcoRI	GAATTC	2 cut(s)	1234, 2623
EcoRII	CCWGG	5 cut(s)	110, 989, 2292, 2496, 3068
EcoRV	GATATC	2 cut(s)	1041, 2578
EcoT14I	CCWWGG	5 cut(s)	147, 982, 2224, 2331, 2732
EcoT22I	ATGCAT	2 cut(s)	6, 2890
EcoT38I	GRGCYC	2 cut(s)	1170, 2740
EgeI	GGCGCC	3 cut(s)	60, 98, 196
EheI	GGCGCC	3 cut(s)	60, 98, 196
ErhI	CCWWGG	5 cut(s)	147, 982, 2224, 2331, 2732
FalI	AAGNNNNNCTT	4 cut(s)	399, 431, 2289, 2321
FauI	CCCGC	1 cut(s)	275
FblI	GTMKAC	1 cut(s)	1178
FokI	GGATG	9 cut(s)	536, 688, 710, 1318, 1953, 2348, 3091, 3224, 3347
FriOI	GRGCYC	2 cut(s)	1170, 2740
GlaI	GCGC	9 cut(s)	60, 98, 196, 260, 265, 1549, 1811, 2701, 3217
GsaI	CCCAGC	2 cut(s)	15, 189
GsuI	CTGGAG	3 cut(s)	1071, 2827, 3091
HaeII	RGCGCY	4 cut(s)	62, 100, 198, 2703
HaeIII	GGCC	6 cut(s)	146, 393, 1821, 2175, 2384, 2738
HapII	CCGG	2 cut(s)	62, 3300
HhaI	GCGC	9 cut(s)	61, 99, 197, 261, 266, 1550, 1812, 2702, 3218
Hin1I	GRCGYC	3 cut(s)	59, 97, 195
Hin6I	GCGC	9 cut(s)	59, 97, 195, 259, 264, 1548, 1810, 2700, 3216
HinP1I	GCGC	9 cut(s)	59, 97, 195, 259, 264, 1548, 1810, 2700, 3216
HincII	GTYRAC	4 cut(s)	748, 2042, 2397, 2869
HindII	GTYRAC	4 cut(s)	748, 2042, 2397, 2869
HindIII	AAGCTT	1 cut(s)	1781
HpaI	GTTAAC	1 cut(s)	748
HpaII	CCGG	2 cut(s)	62, 3300
HphI	GGTGA	7 cut(s)	76, 353, 1154, 1497, 2291, 3108, 3129
Hpy99I	CGWCG	2 cut(s)	2313, 2972
HpyCH4IV	ACGT	3 cut(s)	895, 1558, 2607
HpySE526I	ACGT	3 cut(s)	895, 1558, 2607
Hsp92I	GRCGYC	3 cut(s)	59, 97, 195
HspAI	GCGC	9 cut(s)	59, 97, 195, 259, 264, 1548, 1810, 2700, 3216
KasI	GGCGCC	3 cut(s)	58, 96, 194
KspAI	GTTAAC	1 cut(s)	748
LguI	GCTCTTC	1 cut(s)	2310
LmnI	GCTCC	8 cut(s)	30, 1102, 1121, 1165, 1187, 2416, 2902, 3071
Lsp1109I	GCAGC	7 cut(s)	145, 248, 257, 599, 1106, 1470, 2892
LweI	GCATC	9 cut(s)	703, 988, 1207, 1381, 1510, 1541, 2056, 2091, 2714
MaeII	ACGT	3 cut(s)	895, 1558, 2607
MbiI	CCGCTC	1 cut(s)	2239
MfeI	CAATTG	3 cut(s)	1789, 2091, 2427
MflI	RGATCY	5 cut(s)	16, 1355, 1685, 2257, 2493
MhlI	GDGCHC	5 cut(s)	1133, 1170, 2147, 2571, 2740
MlsI	TGGCCA	1 cut(s)	146
MluNI	TGGCCA	1 cut(s)	146
Mly113I	GGCGCC	3 cut(s)	59, 97, 195
MlyI	GAGTC	7 cut(s)	575, 944, 1905, 1982, 2841, 2921, 3317
MmeI	TCCRAC	4 cut(s)	1522, 2991, 3038, 3114
Mox20I	TGGCCA	1 cut(s)	146
Mph1103I	ATGCAT	2 cut(s)	6, 2890
MroXI	GAANNNNTTC	3 cut(s)	385, 2014, 3079
MscI	TGGCCA	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	2862
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	3 cut(s)	270, 624, 1842
MspI	CCGG	2 cut(s)	62, 3300
MspR9I	CCNGG	5 cut(s)	112, 991, 2294, 2498, 3070
MteI	GCGCNGCGC	1 cut(s)	262
MunI	CAATTG	3 cut(s)	1789, 2091, 2427
Mva1269I	GAATGC	2 cut(s)	2590, 3133
MvaI	CCWGG	5 cut(s)	112, 991, 2294, 2498, 3070
MvnI	CGCG	1 cut(s)	259
NarI	GGCGCC	3 cut(s)	59, 97, 195
NheI	GCTAGC	2 cut(s)	788, 3268
NmeAIII	GCCGAG	1 cut(s)	577
NmuCI	GTSAC	5 cut(s)	178, 326, 2600, 2936, 3220
NsiI	ATGCAT	2 cut(s)	6, 2890
NspI	RCATGY	3 cut(s)	8, 1301, 2710
NspV	TTCGAA	2 cut(s)	1962, 3152
PaeR7I	CTCGAG	1 cut(s)	3121
PagI	TCATGA	1 cut(s)	2580
PceI	AGGCCT	1 cut(s)	2175
PciSI	GCTCTTC	1 cut(s)	2310
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	2 cut(s)	2590, 3133
PdmI	GAANNNNTTC	3 cut(s)	385, 2014, 3079
PflFI	GACNNNGTC	1 cut(s)	324
PfoI	TCCNGGA	3 cut(s)	989, 2496, 3068
PleI	GAGTC	7 cut(s)	575, 943, 1905, 1982, 2841, 2921, 3317
PluTI	GGCGCC	3 cut(s)	62, 100, 198
PmaCI	CACGTG	1 cut(s)	1559
PmlI	CACGTG	1 cut(s)	1559
PpsI	GAGTC	7 cut(s)	575, 943, 1905, 1982, 2841, 2921, 3317
Ppu21I	YACGTR	2 cut(s)	1559, 2608
PpuMI	RGGWCCY	2 cut(s)	221, 3317
PshBI	ATTAAT	2 cut(s)	423, 855
PsiI	TTATAA	1 cut(s)	1826
Psp124BI	GAGCTC	1 cut(s)	1170
Psp5II	RGGWCCY	2 cut(s)	221, 3317
Psp6I	CCWGG	5 cut(s)	110, 989, 2292, 2496, 3068
PspCI	CACGTG	1 cut(s)	1559
PspEI	GGTNACC	2 cut(s)	400, 2662
PspFI	CCCAGC	2 cut(s)	11, 185
PspGI	CCWGG	5 cut(s)	110, 989, 2292, 2496, 3068
PspOMI	GGGCCC	1 cut(s)	2736
PspPI	GGNCC	6 cut(s)	221, 923, 987, 2736, 2737, 3317
PspPPI	RGGWCCY	2 cut(s)	221, 3317
PspXI	VCTCGAGB	1 cut(s)	3121
PsrI	GAACNNNNNNTAC	2 cut(s)	556, 588
PstI	CTGCAG	2 cut(s)	1096, 1460
PstNI	CAGNNNCTG	1 cut(s)	932
PsuI	RGATCY	5 cut(s)	16, 1355, 1685, 2257, 2493
PsyI	GACNNNGTC	1 cut(s)	324
PvuII	CAGCTG	1 cut(s)	1842
RseI	CAYNNNNRTG	1 cut(s)	2862
SacI	GAGCTC	1 cut(s)	1170
SapI	GCTCTTC	1 cut(s)	2310
Sau96I	GGNCC	6 cut(s)	221, 923, 987, 2736, 2737, 3317
ScaI	AGTACT	3 cut(s)	2986, 2995, 3127
SchI	GAGTC	7 cut(s)	575, 944, 1905, 1982, 2841, 2921, 3317
ScrFI	CCNGG	5 cut(s)	112, 991, 2294, 2498, 3070
SduI	GDGCHC	5 cut(s)	1133, 1170, 2147, 2571, 2740
SfaNI	GCATC	9 cut(s)	703, 988, 1207, 1381, 1510, 1541, 2056, 2091, 2714
SfcI	CTRYAG	4 cut(s)	1092, 1456, 1862, 2265
SfoI	GGCGCC	3 cut(s)	60, 98, 196
Sfr274I	CTCGAG	1 cut(s)	3121
SfuI	TTCGAA	2 cut(s)	1962, 3152
SgrAI	CRCCGGYG	1 cut(s)	61
SinI	GGWCC	4 cut(s)	221, 923, 987, 3317
SlaI	CTCGAG	1 cut(s)	3121
SmiMI	CAYNNNNRTG	1 cut(s)	2862
SmlI	CTYRAG	2 cut(s)	1611, 3121
SmoI	CTYRAG	2 cut(s)	1611, 3121
SseBI	AGGCCT	1 cut(s)	2175
SsiI	CCGC	8 cut(s)	198, 268, 278, 624, 705, 1833, 2239, 2588
SspDI	GGCGCC	3 cut(s)	58, 96, 194
SspI	AATATT	2 cut(s)	370, 1624
SstI	GAGCTC	1 cut(s)	1170
StuI	AGGCCT	1 cut(s)	2175
StyD4I	CCNGG	5 cut(s)	110, 989, 2292, 2496, 3068
StyI	CCWWGG	5 cut(s)	147, 982, 2224, 2331, 2732
TaiI	ACGT	3 cut(s)	898, 1561, 2610
TatI	WGTACW	5 cut(s)	572, 941, 2984, 2993, 3125
TauI	GCSGC	3 cut(s)	200, 2242, 2591
TscAI	CASTG	9 cut(s)	320, 661, 913, 1024, 1372, 1516, 1863, 1871, 3225
TseFI	GTSAC	5 cut(s)	178, 326, 2600, 2936, 3220
TseI	GCWGC	7 cut(s)	158, 261, 270, 587, 1094, 1458, 2905
Tsp45I	GTSAC	5 cut(s)	178, 326, 2600, 2936, 3220
TspGWI	ACGGA	4 cut(s)	2135, 2471, 2866, 3320
TspRI	CASTG	9 cut(s)	320, 661, 913, 1024, 1372, 1516, 1863, 1871, 3225
Tth111I	GACNNNGTC	1 cut(s)	324
VneI	GTGCAC	1 cut(s)	2567
VpaK11BI	GGWCC	4 cut(s)	221, 923, 987, 3317
VspI	ATTAAT	2 cut(s)	423, 855
XagI	CCTNNNNNAGG	1 cut(s)	2297
XapI	RAATTY	7 cut(s)	542, 883, 1234, 2075, 2623, 3076, 3341
XbaI	TCTAGA	1 cut(s)	1153
XceI	RCATGY	3 cut(s)	8, 1301, 2710
XhoI	CTCGAG	1 cut(s)	3121
XmaJI	CCTAGG	1 cut(s)	982
XmiI	GTMKAC	1 cut(s)	1178
XmnI	GAANNNNTTC	3 cut(s)	385, 2014, 3079
ZrmI	AGTACT	3 cut(s)	2986, 2995, 3127
Zsp2I	ATGCAT	2 cut(s)	6, 2890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.