Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007452

Physical Location & Seq

Genomic Coordinates Forward (+)

29819274 .. 29819675

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0300600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGATGATGAGTAGCATTGTGAAGAAGCTCTTGTTCTGTGGAGCAAAGGGGTTTCCCTCCATCTCTGACTCGGACGACTCTCGTGTAGTGCCTGTGCCACAAGCCGGTCATGTCCGTGTGTACGTTGGAAGAGATATTAACATGATGTGCAAGTTTGAGATAGAAGCCAATTACTTAAACCACCCACTATTCCGGAGTCTACTCCAGCTCTCCGCAGAACAAGAGTTCGGTTATTCCTACGATGGAGCTCTAAGAATAGCGTGCGACATCGATCTCTTCCACTACATTCTTCATCTCCTCGATACCAGCAATCCCTCTGCCCATTACATGGAGCTTTCTGATCTCATTTCCAAGTTCTACAGCACTAGTGCTACTGTAACTACACTCGCTAAAACTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008283 GO:0009628 GO:0009651 GO:0009791 GO:0009908 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048364 GO:0048366 GO:0048367 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080134 GO:0090567 GO:0099402 GO:0101005 GO:0140096 GO:1901000 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

133

Amino Acids

14.89

Weight (kDa)

5.89

Isoelectric Point (pI)

55.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	22 - 100	2.8e-18	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24560
fragaria_vesca	FvH4_5g35500 FvH4_5g35500 FvH4_5g35500 FvH4_5g35500
malus_domestica	MD08G1196200.v1.1 MD15G1384000.v1.1
prunus_persica	Prupe.1G530100_v2.0.a1 Prupe.1G530100_v2.0.a1
pyrus_communis	pycom08g16850 pycom15g34370
rosa_chinensis	RchiOBHm_Chr7g0236881
rosa_laevigata	RLG00000001053
rosa_multiflora	Rmu_co8158526.1_g000001 Rmu_sc0002867.1_g000006 Rmu_sc0017481.1_g000004 Rmu_sc0032933.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224730
rosa_rugosa	Rorug07G0300500 Rorug07G0300600
rosa_samantha	Rh7AG455400 Rh7BG426600 Rh7CG474200 Rh7DG443400
rosa_wichuraiana	Rw7G037810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	199
AccIII	TCCGGA	1 cut(s)	192
AciI	CCGC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	104, 328
AhlI	ACTAGT	1 cut(s)	365
AluBI	AGCT	4 cut(s)	28, 208, 248, 334
AluI	AGCT	4 cut(s)	28, 208, 248, 334
Alw21I	GWGCWC	1 cut(s)	250
Aor13HI	TCCGGA	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	250
BauI	CACGAG	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	250
BccI	CCATC	2 cut(s)	68, 236
BcuI	ACTAGT	1 cut(s)	365
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	188
Bsa29I	ATCGAT	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 328
Bse118I	RCCGGY	1 cut(s)	104
BseAI	TCCGGA	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	104, 328
BseRI	GAGGAG	1 cut(s)	287
BshVI	ATCGAT	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	2 cut(s)	105, 193
BslI	CCNNNNNNNGG	2 cut(s)	104, 328
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp13I	TCCGGA	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	271, 340
BspACI	CCGC	1 cut(s)	213
BspDI	ATCGAT	1 cut(s)	270
BspEI	TCCGGA	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	104
BssMI	GATC	2 cut(s)	271, 340
BssSI	CACGAG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	2 cut(s)	124, 281
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	1 cut(s)	251
BstKTI	GATC	2 cut(s)	274, 343
BstMBI	GATC	2 cut(s)	271, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstSFI	CTRYAG	1 cut(s)	358
Bsu15I	ATCGAT	1 cut(s)	270
BsuTUI	ATCGAT	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	104
ClaI	ATCGAT	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	3 cut(s)	110, 142, 328
CviJI	RGCY	6 cut(s)	28, 104, 167, 208, 248, 334
CviKI_1	RGCY	6 cut(s)	28, 104, 167, 208, 248, 334
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	2 cut(s)	273, 342
DpnII	GATC	2 cut(s)	271, 340
Eam1104I	CTCTTC	2 cut(s)	124, 281
EarI	CTCTTC	2 cut(s)	124, 281
Ecl136II	GAGCTC	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	250
FaeI	CATG	3 cut(s)	113, 145, 331
FaiI	YATR	3 cut(s)	111, 143, 329
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FatI	CATG	3 cut(s)	109, 141, 327
FblI	GTMKAC	1 cut(s)	199
FriOI	GRGCYC	1 cut(s)	250
FspBI	CTAG	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	188
HapII	CCGG	2 cut(s)	105, 193
Hin1II	CATG	3 cut(s)	113, 145, 331
HinfI	GANTC	3 cut(s)	68, 77, 196
HpaII	CCGG	2 cut(s)	105, 193
Hpy166II	GTNNAC	2 cut(s)	121, 200
Hpy188I	TCNGA	3 cut(s)	67, 73, 340
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	2 cut(s)	121, 200
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	1 cut(s)	251
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	113, 145, 331
Kpn2I	TCCGGA	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	271, 340
LmnI	GCTCC	3 cut(s)	41, 245, 331
LpnPI	CCDG	5 cut(s)	105, 118, 206, 218, 319
MaeI	CTAG	1 cut(s)	366
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	2 cut(s)	273, 342
MboI	GATC	2 cut(s)	271, 340
MboII	GAAGA	4 cut(s)	34, 141, 268, 281
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	1 cut(s)	169
MlyI	GAGTC	3 cut(s)	62, 71, 205
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	3 cut(s)	67, 308, 325
MroI	TCCGGA	1 cut(s)	192
MseI	TTAA	2 cut(s)	138, 176
MslI	CAYNNNNRTG	1 cut(s)	114
MspI	CCGG	2 cut(s)	105, 193
MwoI	GCNNNNNNNGC	1 cut(s)	395
NdeII	GATC	2 cut(s)	271, 340
NlaIII	CATG	3 cut(s)	113, 145, 331
PflMI	CCANNNNNTGG	1 cut(s)	328
PleI	GAGTC	3 cut(s)	62, 71, 204
PpsI	GAGTC	3 cut(s)	62, 71, 204
Psp124BI	GAGCTC	1 cut(s)	250
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	138, 176
Sau3AI	GATC	2 cut(s)	271, 340
SchI	GAGTC	3 cut(s)	62, 71, 205
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	5 cut(s)	30, 126, 210, 250, 336
SfcI	CTRYAG	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	114
SpeI	ACTAGT	1 cut(s)	365
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	1 cut(s)	366
SstI	GAGCTC	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	376
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	270, 300
TasI	AATT	1 cut(s)	169
Tru1I	TTAA	2 cut(s)	138, 176
Tru9I	TTAA	2 cut(s)	138, 176
TspDTI	ATGAA	1 cut(s)	281
TspGWI	ACGGA	1 cut(s)	104
Van91I	CCANNNNNTGG	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	199
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.