Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007452

Physical Location & Seq

Genomic Coordinates Forward (+)

47298595 .. 47305265

Gene Structure 6671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1384000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3180 bp

ATGCATGTGGCTGGGGATTTAGGGTTTCGGAGCCTCGTGCTGGTGGTTTCTTTTCTGGCGTCGGTGATCGGATTCTTCGTGGTTCGGAGAAAATGGCGCCTCGCTAACGCCAGGAGGGAGGAGATCAGGAGACTTTTGGTCTTGGCCAAGGAGGAAGATGCTAGAGCTGAGTTCGAGGTCACGGCTGGGTACGGCGCTGTTCCGGTAGCTGAGATTAAAGGTTCGTATTGCGTTGTTTGTTACTGCCCCACCACCACGCGCTGCGCCCGCTGCAAAGCGGTTCGTTACTGTTCTGCAAAGTGTCAAATTGTTCATTGGCGACAAGGTCACAAGGAAGAGTGCCGTCCTCCTAGCATAATTCACCAGAATGTTGTAGTGGCAAGTGATTTTGAACTAAAGGTAACCAAAGAAGACCTTGAAATTAATACCAACAAGTTTGAAAGCAGGGAGTCTGTTGAAAAATCTTCTGAGGAACCTGCATTGCCTAAACCTGGTTGCCCTCCCGATGTTGAATGTATAAGGGATGATGATAGTGAAGATGAATTTCTTGCCGAGAGGAAAGGAACAAATTCTACATCTGACTCACCAGCTACCTCTTTTTCTGGATTTTCTACTTCTGCCAGCGGTACTGAATCTTCGGACGATGTTTCTGTCAGTGGGAGTGTTAGTTCATTTGAACCTGACAGATCAGATGGGCAACCATCTGCTGATGATGCCTTTGAGATCCAGCAGACCCCTTTTTTTATGAAAGCCCAGCAGACTCCCCTTAATGGTAACAACATCGATCAATCTAAGCCATCATCTCCAAAGTTTGCTAGCTTGGTTGATTCTGTTGGTGGTTTTGCTAAGTTGAATAAGTTGAATCAGGTTAAACTTAGTGTTAAGGATGAAGAAAATGAGCGGGGATCAAATTCTTCTTCAGGTTTGAACAACAGTGGCATGAGTGAGGGTCCAGTTGCTGAGTCTTGTACGCCATCCTCTGATTTCTGGGGGAACACTCTTGATCCCGTAGGGTCCAGGAGTGATGCCCAAGTGTCCAATTCCAGTGTAGCTAGTAATAGAAAGATATCTGATTCTGGATCTTCCTTACATCTTTCATTCAACTTGTCTGGAAGTACTTCACCTCCCCTTCATAGGCTAGGCTCCAGGTCAAGTGGCACTAGGTTAGGTGATGATCTTCTGGATTCTTCGAAGCTCAGTAAGTCCACTTGTGGAGCAGATTTATCAGAGAAGATTAGTGGAGATGCTGTGAAGGTCAAGAATTCTCCATCCCAGAAAAGTAAATGGTCGAAAAATGGGGATAATGATTCTAGCAGCAATTCACATGCCTTCAAGTTCAGAGAAATTAAGTCTTCCTCCTCGCCTTCTGTTCATAAATCTGTTGGCACTGAAAGAATTTCAAAATGCACACATGCTTTGAAACCTAGTAGAGTGCTATCCACAAGTTCAGAAAGGTCAGATCATGCTGTTAAGAACTGCAACAGAACTTCAGATGTTTTGAAGTCTAGGGAAGCTGGAACTCCATCACCCAGTGTTTCTGATTCTCGCCATGCATCTGCTGTTGGAGGCTCACTTCCATGTGTAAAATCTGGAAAAGTTGACATTGTTGAGGCTAGTAATGCTGTCTCATCTCAAGCTACAAATCTTTCAAATGACAGGAATGGCTTGAAAACCTCTGTATTTAAGGTTTTCGATCAGTTTAGAGGATCCAAAATACCAAAGCACTATCCTGTCGGAGTTGGGAGTGAGGTTGCAGGAAAATACAGCGAGAAGGAACTCTTTCGGTATGAATTATTTGTCAAGCTTTACAATTGGAACAAGGTGGAATTGCGCCCTTCTGGCCTTATAAATTGCGGTAACAGCTGCTATGCCAATGCAGTGCTACAGTGCTTGTCATTTACTCCACCTCTGACTGCTTATTTGCTTCAAGGATTCCATTCTAAGGCTTGTGTAAAGAAGGAATGGTGTTTCATGTGTGAGTTTGAAAGTCTAGTTTCGAAGGCAAAGGAAGGGAGCTCTCCTCTGTCTCCTATGGGAATACTTTCCCAGTTGAGAAAAATTGGAAGTCAACTTGGTAATGGGAGAGAAGAAGATGCCCATGAATTTCTAAGGTATGCTATTGACATGATGCAATCAGTTTGCCTTACGGAAGCTGGGGTTAATTCGTCGCGCTTCTTGAAAGAAGAAACAACTTTAATAGGCCTTACATTTGGAGGCTACCTTCGATCAAAGATAAAATGCACAAAGTGCCAAGGTAAGTCTGAGCGGCAGGAAAGAATGATGGATCTTACTGTTGAGATTGAGGGTGATATAGGAACCCTGGAAGAGGCTCTTCGTCGATTTACTGGTACTGAGACCTTGGATGGGGAGAACAAATACCAATGTGTCAGATGCAAATCTTATGAGAAGGCCAAAAAGAAGTTGACGATACTGGAAGCTCCAAATATCCTTACAATTGCACTAAAGCGTTTTCAGTCTGGAAAATTTGGGAAGATCAATAAGCCTATCCGGTTTCCTGAGATCCTGGACTTGGCACCTTTTATGAGTAGTACAAGTGATAAATCGCCTATATACAGACTTTACGGGGTGGTTGTTCACTTAGATATCATGAATTCCGCATTTTCTGGTCACTACGTGTGCTATGTCAGGAATTCCCAGAACAAGTGGTTCATGGTTGATGACAGCACGGTAACACCTGTGGAACTTGAAAAGGTCTTGATGAAAGGCGCTTACATGCTTCTTTATTCAAGATGCTTGCCAAGGGCCCCGCGATTGATAAGGAACAGGATAATCTCTCCTGATCCCAAACATCGAGCCATTCCTTCCTGGATCGGTGGAAAGACTACCAATTTGAAACCAAAATCTGTCTCCACACATTCTGCTGTTCCCCCTTCCGTACCCAGTGCATATTCACCAGAGGAGCTGCAAAGGATTATGGAACAGGACTCATCAAGTGACAATTCTTCCCTTATCAGCAACAACTCCGACGAAGGTTCTTACAGTACTGATAGTACTTGTTGCTCTACCAGCACCGATGACTTGTCCGATTACATATTTGGTCATTCAGTGCATGGTTGGAGTAGCTCGTTTAGAAAATTTTCAGATTCTGACACTTCTTCGTCTTCCTCACCCTCAAGTACTAAGCATTCGCCCCTCTCTGATTCGTGCCGGTATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008283 GO:0009628 GO:0009651 GO:0009791 GO:0009908 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048364 GO:0048366 GO:0048367 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080134 GO:0090567 GO:0099402 GO:0101005 GO:0140096 GO:1901000 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

1060

Amino Acids

115.81

Weight (kDa)

8.42

Isoelectric Point (pI)

51.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-MYND	PF01753	77 - 114	1.3e-07	MYND finger
UCH_1	PF13423	613 - 897	2.2e-23	Ubiquitin carboxyl-terminal hydrolase
UCH	PF00443	614 - 915	6.2e-56	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24560
fragaria_vesca	FvH4_5g35500 FvH4_5g35500 FvH4_5g35500 FvH4_5g35500
malus_domestica	MD08G1196200.v1.1 MD15G1384000.v1.1
prunus_persica	Prupe.1G530100_v2.0.a1 Prupe.1G530100_v2.0.a1
pyrus_communis	pycom08g16850 pycom15g34370
rosa_chinensis	RchiOBHm_Chr7g0236881
rosa_laevigata	RLG00000001053
rosa_multiflora	Rmu_co8158526.1_g000001 Rmu_sc0002867.1_g000006 Rmu_sc0017481.1_g000004 Rmu_sc0032933.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224730
rosa_rugosa	Rorug07G0300500 Rorug07G0300600
rosa_samantha	Rh7AG455400 Rh7BG426600 Rh7CG474200 Rh7DG443400
rosa_wichuraiana	Rw7G037810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1847
Acc36I	ACCTGC	1 cut(s)	484
AccB1I	GGYRCC	2 cut(s)	96, 2533
AccBSI	CCGCTC	2 cut(s)	901, 2266
AccII	CGCG	3 cut(s)	259, 2170, 2770
AciI	CCGC	8 cut(s)	268, 278, 624, 901, 1854, 2266, 2616, 2768
AcoI	YGGCCR	1 cut(s)	144
AcuI	CTGAAG	2 cut(s)	903, 1473
AcyI	GRCGYC	2 cut(s)	59, 97
AdeI	CACNNNGTG	3 cut(s)	1532, 2247, 2635
AfiI	CCNNNNNNNGG	8 cut(s)	40, 491, 770, 1134, 1942, 2326, 2364, 2530
AflIII	ACRYGT	1 cut(s)	2634
AhdI	GACNNNNNGTC	1 cut(s)	137
AjnI	CCWGG	7 cut(s)	110, 490, 1016, 1145, 2319, 2523, 2825
AloI	GAACNNNNNNTCC	2 cut(s)	652, 684
Alw21I	GWGCWC	1 cut(s)	2018
Alw26I	GTCTC	5 cut(s)	124, 1630, 2031, 2348, 2872
AlwNI	CAGNNNCTG	2 cut(s)	959, 3107
AoxI	GGCC	5 cut(s)	144, 1840, 2200, 2409, 2763
ApaI	GGGCCC	1 cut(s)	2767
ApeKI	GCWGC	5 cut(s)	261, 270, 1314, 1863, 2923
ArsI	GACNNNNNNTTYG	4 cut(s)	1903, 1935, 2833, 2865
AseI	ATTAAT	1 cut(s)	423
Asp700I	GAANNNNTTC	5 cut(s)	568, 1117, 1779, 2041, 3097
AspLEI	GCGC	7 cut(s)	99, 197, 261, 266, 1833, 2172, 2729
AspS9I	GGNCC	4 cut(s)	950, 1014, 2763, 2764
AsuHPI	GGTGA	9 cut(s)	76, 353, 576, 1113, 1181, 1518, 2318, 2904, 3120
AsuII	TTCGAA	2 cut(s)	1190, 1997
AsuNHI	GCTAGC	1 cut(s)	815
AvaII	GGWCC	2 cut(s)	950, 1014
BaeGI	GKGCMC	1 cut(s)	2767
BalI	TGGCCA	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	1706
BanI	GGYRCC	2 cut(s)	96, 2533
BanII	GRGCYC	2 cut(s)	2018, 2767
BarI	GAAGNNNNNNTAC	2 cut(s)	619, 651
BauI	CACGAG	1 cut(s)	35
BbsI	GAAGAC	3 cut(s)	417, 1344, 3114
Bbv12I	GWGCWC	1 cut(s)	2018
BbvI	GCAGC	5 cut(s)	248, 257, 1326, 1850, 2910
BccI	CCATC	8 cut(s)	686, 709, 805, 982, 1276, 1531, 2275, 2357
BceAI	ACGGC	3 cut(s)	198, 208, 327
BciT130I	CCWGG	7 cut(s)	112, 492, 1018, 1147, 2321, 2525, 2827
BcoDI	GTCTC	5 cut(s)	124, 1630, 2031, 2348, 2872
BfmI	CTRYAG	1 cut(s)	1883
BfoI	RGCGCY	3 cut(s)	100, 198, 2730
BfuAI	ACCTGC	1 cut(s)	484
BglI	GCCNNNNNGGC	1 cut(s)	1839
BisI	GCNGC	6 cut(s)	262, 271, 1315, 1864, 2267, 2924
BlsI	GCNGC	6 cut(s)	263, 272, 1316, 1865, 2268, 2925
BmcAI	AGTACT	4 cut(s)	1117, 3004, 3013, 3139
Bme1390I	CCNGG	7 cut(s)	112, 492, 1018, 1147, 2321, 2525, 2827
Bme18I	GGWCC	2 cut(s)	950, 1014
BmeRI	GACNNNNNGTC	1 cut(s)	137
BmgT120I	GGNCC	4 cut(s)	950, 1014, 2763, 2764
BmrFI	CCNGG	7 cut(s)	112, 492, 1018, 1147, 2321, 2525, 2827
BmrI	ACTGGG	3 cut(s)	1524, 2041, 2895
BmsI	GCATC	9 cut(s)	148, 703, 1015, 1234, 1562, 2083, 2118, 2381, 2741
BmtI	GCTAGC	1 cut(s)	819
BmuI	ACTGGG	3 cut(s)	1524, 2041, 2895
BpiI	GAAGAC	3 cut(s)	417, 1344, 3114
BplI	GAGNNNNNCTC	2 cut(s)	2005, 2037
BpmI	CTGGAG	1 cut(s)	1129
Bpu14I	TTCGAA	2 cut(s)	1190, 1997
BpuEI	CTTGAG	2 cut(s)	1617, 3118
Bsa29I	ATCGAT	1 cut(s)	783
BsaAI	YACGTR	1 cut(s)	2635
BsaBI	GATNNNNATC	1 cut(s)	2395
BsaHI	GRCGYC	2 cut(s)	59, 97
BsaI	GGTCTC	1 cut(s)	2348
BsaJI	CCNNGG	5 cut(s)	147, 2251, 2319, 2358, 2759
BsaWI	WCCGGW	2 cut(s)	202, 2508
BsaXI	ACNNNNNCTCC	6 cut(s)	652, 682, 1108, 1138, 1233, 1263
Bsc4I	CCNNNNNNNGG	8 cut(s)	40, 491, 770, 1134, 1942, 2326, 2364, 2530
Bse118I	RCCGGY	1 cut(s)	3168
Bse1I	ACTGG	7 cut(s)	953, 1044, 1530, 2047, 2350, 2436, 2901
Bse3DI	GCAATG	1 cut(s)	479
Bse8I	GATNNNNATC	1 cut(s)	2395
BseBI	CCWGG	7 cut(s)	112, 492, 1018, 1147, 2321, 2525, 2827
BseCI	ATCGAT	1 cut(s)	783
BseDI	CCNNGG	5 cut(s)	147, 2251, 2319, 2358, 2759
BseGI	GGATG	5 cut(s)	529, 892, 974, 1268, 2368
BseJI	GATNNNNATC	1 cut(s)	2395
BseLI	CCNNNNNNNGG	8 cut(s)	40, 491, 770, 1134, 1942, 2326, 2364, 2530
BseMI	GCAATG	1 cut(s)	479
BseMII	CTCAG	8 cut(s)	159, 201, 459, 951, 1210, 2253, 2343, 2508
BseNI	ACTGG	7 cut(s)	953, 1044, 1530, 2047, 2350, 2436, 2901
BseRI	GAGGAG	4 cut(s)	134, 1348, 2010, 2933
BseSI	GKGCMC	1 cut(s)	2767
BseXI	GCAGC	5 cut(s)	248, 257, 1326, 1850, 2910
BseYI	CCCAGC	4 cut(s)	11, 185, 753, 2153
Bsh1236I	CGCG	3 cut(s)	259, 2170, 2770
BshFI	GGCC	5 cut(s)	146, 1842, 2202, 2411, 2765
BshNI	GGYRCC	2 cut(s)	96, 2533
BshVI	ATCGAT	1 cut(s)	783
BsiHKAI	GWGCWC	1 cut(s)	2018
BsiSI	CCGG	3 cut(s)	203, 2509, 3169
BslI	CCNNNNNNNGG	8 cut(s)	40, 491, 770, 1134, 1942, 2326, 2364, 2530
BsmAI	GTCTC	5 cut(s)	124, 1630, 2031, 2348, 2872
BsmI	GAATGC	1 cut(s)	3145
BsnI	GGCC	5 cut(s)	146, 1842, 2202, 2411, 2765
Bso31I	GGTCTC	1 cut(s)	2348
Bsp119I	TTCGAA	2 cut(s)	1190, 1997
Bsp120I	GGGCCC	1 cut(s)	2763
Bsp1286I	GDGCHC	2 cut(s)	2018, 2767
BspACI	CCGC	8 cut(s)	268, 278, 624, 901, 1854, 2266, 2616, 2768
BspANI	GGCC	5 cut(s)	146, 1842, 2202, 2411, 2765
BspCNI	CTCAG	8 cut(s)	160, 202, 460, 952, 1209, 2254, 2344, 2509
BspDI	ATCGAT	1 cut(s)	783
BspFNI	CGCG	3 cut(s)	259, 2170, 2770
BspHI	TCATGA	1 cut(s)	2607
BspMI	ACCTGC	1 cut(s)	484
BspOI	GCTAGC	1 cut(s)	819
BspQI	GCTCTTC	1 cut(s)	2337
BspT104I	TTCGAA	2 cut(s)	1190, 1997
BspT107I	GGYRCC	2 cut(s)	96, 2533
BspTNI	GGTCTC	1 cut(s)	2348
BsrBI	CCGCTC	2 cut(s)	901, 2266
BsrDI	GCAATG	1 cut(s)	479
BsrFI	RCCGGY	1 cut(s)	3168
BsrI	ACTGG	7 cut(s)	953, 1044, 1530, 2047, 2350, 2436, 2901
BssAI	RCCGGY	1 cut(s)	3168
BssECI	CCNNGG	5 cut(s)	147, 2251, 2319, 2358, 2759
BssNI	GRCGYC	2 cut(s)	59, 97
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	4 cut(s)	147, 2251, 2358, 2759
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	7 cut(s)	112, 492, 1018, 1147, 2321, 2525, 2827
Bst4CI	ACNGT	6 cut(s)	290, 935, 1887, 2293, 2689, 3002
Bst6I	CTCTTC	3 cut(s)	330, 2319, 2337
BstACI	GRCGYC	2 cut(s)	59, 97
BstAPI	GCANNNNNTGC	1 cut(s)	2247
BstBAI	YACGTR	1 cut(s)	2635
BstBI	TTCGAA	2 cut(s)	1190, 1997
BstC8I	GCNNGC	4 cut(s)	268, 622, 817, 2756
BstEII	GGTNACC	1 cut(s)	400
BstENI	CCTNNNNNAGG	1 cut(s)	2324
BstF5I	GGATG	5 cut(s)	529, 892, 974, 1268, 2368
BstFNI	CGCG	3 cut(s)	259, 2170, 2770
BstH2I	RGCGCY	3 cut(s)	100, 198, 2730
BstHHI	GCGC	7 cut(s)	99, 197, 261, 266, 1833, 2172, 2729
BstMAI	GTCTC	5 cut(s)	124, 1630, 2031, 2348, 2872
BstMWI	GCNNNNNNNGC	8 cut(s)	267, 270, 713, 1619, 1839, 1860, 2247, 3027
BstNI	CCWGG	7 cut(s)	112, 492, 1018, 1147, 2321, 2525, 2827
BstNSI	RCATGY	4 cut(s)	8, 1328, 1415, 2737
BstPI	GGTNACC	1 cut(s)	400
BstSCI	CCNGG	7 cut(s)	110, 490, 1016, 1145, 2319, 2523, 2825
BstSFI	CTRYAG	1 cut(s)	1883
BstSLI	GKGCMC	1 cut(s)	2767
BstUI	CGCG	3 cut(s)	259, 2170, 2770
BstV1I	GCAGC	5 cut(s)	248, 257, 1326, 1850, 2910
BstV2I	GAAGAC	3 cut(s)	417, 1344, 3114
BstX2I	RGATCY	5 cut(s)	723, 1079, 1706, 2284, 2520
BstYI	RGATCY	5 cut(s)	723, 1079, 1706, 2284, 2520
Bsu15I	ATCGAT	1 cut(s)	783
BsuRI	GGCC	5 cut(s)	146, 1842, 2202, 2411, 2765
BsuTUI	ATCGAT	1 cut(s)	783
BtsCI	GGATG	5 cut(s)	529, 892, 974, 1268, 2368
BtsI	GCAGTG	1 cut(s)	1884
BtsIMutI	CAGTG	9 cut(s)	661, 940, 1051, 1386, 1537, 1884, 1892, 2908, 3072
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	4 cut(s)	268, 622, 817, 2756
CaiI	CAGNNNCTG	2 cut(s)	959, 3107
CciI	TCATGA	1 cut(s)	2607
CfoI	GCGC	7 cut(s)	99, 197, 261, 266, 1833, 2172, 2729
Cfr10I	RCCGGY	1 cut(s)	3168
Cfr13I	GGNCC	4 cut(s)	950, 1014, 2763, 2764
ClaI	ATCGAT	1 cut(s)	783
CseI	GACGC	1 cut(s)	48
CsiI	ACCWGGT	1 cut(s)	490
DinI	GGCGCC	1 cut(s)	98
DraIII	CACNNNGTG	3 cut(s)	1532, 2247, 2635
DriI	GACNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	3 cut(s)	330, 2319, 2337
Eam1105I	GACNNNNNGTC	1 cut(s)	137
EarI	CTCTTC	3 cut(s)	330, 2319, 2337
Ecl136II	GAGCTC	1 cut(s)	2016
Eco130I	CCWWGG	4 cut(s)	147, 2251, 2358, 2759
Eco147I	AGGCCT	1 cut(s)	2202
Eco24I	GRGCYC	2 cut(s)	2018, 2767
Eco31I	GGTCTC	1 cut(s)	2348
Eco32I	GATATC	2 cut(s)	1068, 2605
Eco47I	GGWCC	2 cut(s)	950, 1014
Eco53kI	GAGCTC	1 cut(s)	2016
Eco57I	CTGAAG	2 cut(s)	903, 1473
Eco91I	GGTNACC	1 cut(s)	400
EcoICRI	GAGCTC	1 cut(s)	2016
EcoNI	CCTNNNNNAGG	1 cut(s)	2324
EcoO109I	RGGNCCY	2 cut(s)	2763, 2764
EcoO65I	GGTNACC	1 cut(s)	400
EcoRI	GAATTC	3 cut(s)	1261, 2611, 2650
EcoRII	CCWGG	7 cut(s)	110, 490, 1016, 1145, 2319, 2523, 2825
EcoRV	GATATC	2 cut(s)	1068, 2605
EcoT14I	CCWWGG	4 cut(s)	147, 2251, 2358, 2759
EcoT22I	ATGCAT	2 cut(s)	6, 1555
EcoT38I	GRGCYC	2 cut(s)	2018, 2767
EgeI	GGCGCC	1 cut(s)	98
EheI	GGCGCC	1 cut(s)	98
ErhI	CCWWGG	4 cut(s)	147, 2251, 2358, 2759
FalI	AAGNNNNNCTT	6 cut(s)	399, 431, 1763, 1795, 2316, 2348
FauI	CCCGC	3 cut(s)	275, 894, 2775
Fnu4HI	GCNGC	6 cut(s)	262, 271, 1315, 1864, 2267, 2924
FokI	GGATG	5 cut(s)	536, 899, 961, 1255, 2375
FriOI	GRGCYC	2 cut(s)	2018, 2767
Fsp4HI	GCNGC	6 cut(s)	262, 271, 1315, 1864, 2267, 2924
GlaI	GCGC	7 cut(s)	98, 196, 260, 265, 1832, 2171, 2728
GluI	GCNGC	6 cut(s)	262, 271, 1315, 1864, 2267, 2924
GsaI	CCCAGC	4 cut(s)	15, 189, 757, 2157
GsuI	CTGGAG	1 cut(s)	1129
HaeII	RGCGCY	3 cut(s)	100, 198, 2730
HaeIII	GGCC	5 cut(s)	146, 1842, 2202, 2411, 2765
HapII	CCGG	3 cut(s)	203, 2509, 3169
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	7 cut(s)	99, 197, 261, 266, 1833, 2172, 2729
Hin1I	GRCGYC	2 cut(s)	59, 97
Hin6I	GCGC	7 cut(s)	97, 195, 259, 264, 1831, 2170, 2727
HinP1I	GCGC	7 cut(s)	97, 195, 259, 264, 1831, 2170, 2727
HincII	GTYRAC	3 cut(s)	1600, 2069, 2424
HindII	GTYRAC	3 cut(s)	1600, 2069, 2424
HindIII	AAGCTT	1 cut(s)	1802
HpaII	CCGG	3 cut(s)	203, 2509, 3169
HphI	GGTGA	9 cut(s)	76, 353, 576, 1113, 1181, 1518, 2318, 2904, 3120
Hpy166II	GTNNAC	5 cut(s)	1206, 1600, 2069, 2424, 2596
Hpy8I	GTNNAC	5 cut(s)	1206, 1600, 2069, 2424, 2596
Hpy99I	CGWCG	4 cut(s)	64, 2170, 2340, 2990
HpyCH4III	ACNGT	6 cut(s)	290, 935, 1887, 2293, 2689, 3002
HpyCH4IV	ACGT	1 cut(s)	2634
HpyF10VI	GCNNNNNNNGC	8 cut(s)	267, 270, 713, 1619, 1839, 1860, 2247, 3027
HpySE526I	ACGT	1 cut(s)	2634
Hsp92I	GRCGYC	2 cut(s)	59, 97
HspAI	GCGC	7 cut(s)	97, 195, 259, 264, 1831, 2170, 2727
KasI	GGCGCC	1 cut(s)	96
LguI	GCTCTTC	1 cut(s)	2337
LmnI	GCTCC	6 cut(s)	30, 1148, 1214, 2013, 2443, 2920
Lsp1109I	GCAGC	5 cut(s)	248, 257, 1326, 1850, 2910
LweI	GCATC	9 cut(s)	148, 703, 1015, 1234, 1562, 2083, 2118, 2381, 2741
MabI	ACCWGGT	1 cut(s)	490
MaeII	ACGT	1 cut(s)	2634
MbiI	CCGCTC	2 cut(s)	901, 2266
MfeI	CAATTG	2 cut(s)	1810, 2454
MflI	RGATCY	5 cut(s)	723, 1079, 1706, 2284, 2520
MhlI	GDGCHC	2 cut(s)	2018, 2767
MlsI	TGGCCA	1 cut(s)	146
MluNI	TGGCCA	1 cut(s)	146
Mly113I	GGCGCC	1 cut(s)	97
MlyI	GAGTC	5 cut(s)	458, 575, 754, 971, 2939
MmeI	TCCRAC	4 cut(s)	1543, 1714, 3009, 3056
Mox20I	TGGCCA	1 cut(s)	146
Mph1103I	ATGCAT	2 cut(s)	6, 1555
MroXI	GAANNNNTTC	5 cut(s)	568, 1117, 1779, 2041, 3097
MscI	TGGCCA	1 cut(s)	146
MslI	CAYNNNNRTG	2 cut(s)	366, 1576
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	3 cut(s)	270, 624, 1863
MspI	CCGG	3 cut(s)	203, 2509, 3169
MspR9I	CCNGG	7 cut(s)	112, 492, 1018, 1147, 2321, 2525, 2827
MteI	GCGCNGCGC	1 cut(s)	262
MunI	CAATTG	2 cut(s)	1810, 2454
Mva1269I	GAATGC	1 cut(s)	3145
MvaI	CCWGG	7 cut(s)	112, 492, 1018, 1147, 2321, 2525, 2827
MvnI	CGCG	3 cut(s)	259, 2170, 2770
MwoI	GCNNNNNNNGC	8 cut(s)	267, 270, 713, 1619, 1839, 1860, 2247, 3027
NarI	GGCGCC	1 cut(s)	97
NheI	GCTAGC	1 cut(s)	815
NmeAIII	GCCGAG	1 cut(s)	577
NmuCI	GTSAC	4 cut(s)	178, 326, 2627, 2954
NsiI	ATGCAT	2 cut(s)	6, 1555
NspI	RCATGY	4 cut(s)	8, 1328, 1415, 2737
NspV	TTCGAA	2 cut(s)	1190, 1997
PagI	TCATGA	1 cut(s)	2607
PceI	AGGCCT	1 cut(s)	2202
PciSI	GCTCTTC	1 cut(s)	2337
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	3145
PdmI	GAANNNNTTC	5 cut(s)	568, 1117, 1779, 2041, 3097
PflFI	GACNNNGTC	1 cut(s)	324
PfoI	TCCNGGA	3 cut(s)	1016, 2523, 2825
PkrI	GCNGC	6 cut(s)	263, 272, 1316, 1865, 2268, 2925
PleI	GAGTC	5 cut(s)	457, 575, 754, 970, 2939
PluTI	GGCGCC	1 cut(s)	100
PpsI	GAGTC	5 cut(s)	457, 575, 754, 970, 2939
Ppu21I	YACGTR	1 cut(s)	2635
PshBI	ATTAAT	1 cut(s)	423
PsiI	TTATAA	1 cut(s)	1847
Psp124BI	GAGCTC	1 cut(s)	2018
Psp6I	CCWGG	7 cut(s)	110, 490, 1016, 1145, 2319, 2523, 2825
PspEI	GGTNACC	1 cut(s)	400
PspFI	CCCAGC	4 cut(s)	11, 185, 753, 2153
PspGI	CCWGG	7 cut(s)	110, 490, 1016, 1145, 2319, 2523, 2825
PspOMI	GGGCCC	1 cut(s)	2763
PspPI	GGNCC	4 cut(s)	950, 1014, 2763, 2764
PsrI	GAACNNNNNNTAC	2 cut(s)	556, 588
PstNI	CAGNNNCTG	2 cut(s)	959, 3107
PsuI	RGATCY	5 cut(s)	723, 1079, 1706, 2284, 2520
PsyI	GACNNNGTC	1 cut(s)	324
PvuII	CAGCTG	1 cut(s)	1863
RseI	CAYNNNNRTG	2 cut(s)	366, 1576
SacI	GAGCTC	1 cut(s)	2018
SapI	GCTCTTC	1 cut(s)	2337
SatI	GCNGC	6 cut(s)	262, 271, 1315, 1864, 2267, 2924
Sau96I	GGNCC	4 cut(s)	950, 1014, 2763, 2764
ScaI	AGTACT	4 cut(s)	1117, 3004, 3013, 3139
SchI	GAGTC	5 cut(s)	458, 575, 754, 971, 2939
ScrFI	CCNGG	7 cut(s)	112, 492, 1018, 1147, 2321, 2525, 2827
SduI	GDGCHC	2 cut(s)	2018, 2767
SexAI	ACCWGGT	1 cut(s)	490
SfaNI	GCATC	9 cut(s)	148, 703, 1015, 1234, 1562, 2083, 2118, 2381, 2741
SfcI	CTRYAG	1 cut(s)	1883
SfoI	GGCGCC	1 cut(s)	98
SfuI	TTCGAA	2 cut(s)	1190, 1997
SinI	GGWCC	2 cut(s)	950, 1014
SmiMI	CAYNNNNRTG	2 cut(s)	366, 1576
SmlI	CTYRAG	2 cut(s)	1632, 3133
SmoI	CTYRAG	2 cut(s)	1632, 3133
SseBI	AGGCCT	1 cut(s)	2202
SsiI	CCGC	8 cut(s)	268, 278, 624, 901, 1854, 2266, 2616, 2768
SspDI	GGCGCC	1 cut(s)	96
SstI	GAGCTC	1 cut(s)	2018
StuI	AGGCCT	1 cut(s)	2202
StyD4I	CCNGG	7 cut(s)	110, 490, 1016, 1145, 2319, 2523, 2825
StyI	CCWWGG	4 cut(s)	147, 2251, 2358, 2759
TaaI	ACNGT	6 cut(s)	290, 935, 1887, 2293, 2689, 3002
TaiI	ACGT	1 cut(s)	2637
TaqI	TCGA	9 cut(s)	174, 783, 1190, 1289, 1692, 1997, 2224, 2338, 2812
TatI	WGTACW	5 cut(s)	1115, 2549, 3002, 3011, 3137
TauI	GCSGC	1 cut(s)	2269
TscAI	CASTG	9 cut(s)	661, 940, 1051, 1393, 1537, 1884, 1892, 2908, 3072
TseFI	GTSAC	4 cut(s)	178, 326, 2627, 2954
TseI	GCWGC	5 cut(s)	261, 270, 1314, 1863, 2923
Tsp45I	GTSAC	4 cut(s)	178, 326, 2627, 2954
TspGWI	ACGGA	2 cut(s)	2162, 2884
TspRI	CASTG	9 cut(s)	661, 940, 1051, 1393, 1537, 1884, 1892, 2908, 3072
Tth111I	GACNNNGTC	1 cut(s)	324
VpaK11BI	GGWCC	2 cut(s)	950, 1014
VspI	ATTAAT	1 cut(s)	423
XagI	CCTNNNNNAGG	1 cut(s)	2324
XceI	RCATGY	4 cut(s)	8, 1328, 1415, 2737
XmnI	GAANNNNTTC	5 cut(s)	568, 1117, 1779, 2041, 3097
ZrmI	AGTACT	4 cut(s)	1117, 3004, 3013, 3139
Zsp2I	ATGCAT	2 cut(s)	6, 1555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.