ubiquitin carboxyl-terminal hydrolase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G24560 |
| fragaria_vesca | FvH4_5g35500 FvH4_5g35500 FvH4_5g35500 FvH4_5g35500 |
| malus_domestica | MD08G1196200.v1.1 MD15G1384000.v1.1 |
| prunus_persica | Prupe.1G530100_v2.0.a1 Prupe.1G530100_v2.0.a1 |
| pyrus_communis | pycom08g16850 pycom15g34370 |
| rosa_chinensis | RchiOBHm_Chr7g0236881 |
| rosa_laevigata | RLG00000001053 |
| rosa_multiflora | Rmu_co8158526.1_g000001 Rmu_sc0002867.1_g000006 Rmu_sc0017481.1_g000004 Rmu_sc0032933.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00224730 |
| rosa_rugosa | Rorug07G0300500 Rorug07G0300600 |
| rosa_samantha | Rh7AG455400 Rh7BG426600 Rh7CG474200 Rh7DG443400 |
| rosa_wichuraiana | Rw7G037810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1730 |
| AatII | GACGTC | 1 cut(s) | 198 |
| Acc36I | ACCTGC | 1 cut(s) | 484 |
| AccB1I | GGYRCC | 3 cut(s) | 1366, 2130, 2416 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1774 |
| AccBSI | CCGCTC | 3 cut(s) | 2149, 2880, 3058 |
| AccI | GTMKAC | 2 cut(s) | 1107, 3118 |
| AccII | CGCG | 2 cut(s) | 99, 107 |
| AclWI | GGATC | 6 cut(s) | 24, 589, 640, 2175, 2678, 2720 |
| AcoI | YGGCCR | 2 cut(s) | 108, 2875 |
| AcsI | RAATTY | 9 cut(s) | 461, 568, 1985, 2366, 2403, 2800, 2993, 3181, 3296 |
| AcuI | CTGAAG | 6 cut(s) | 416, 621, 876, 1139, 1249, 1793 |
| AcyI | GRCGYC | 1 cut(s) | 195 |
| AdeI | CACNNNGTG | 1 cut(s) | 2130 |
| AfaI | GTAC | 9 cut(s) | 287, 943, 1339, 1500, 2391, 2434, 2615, 2902, 3077 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 40, 61, 68, 274, 491, 505, 1774, 2209 |
| AgeI | ACCGGT | 1 cut(s) | 3072 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1114 |
| AjiI | CACGTC | 1 cut(s) | 2969 |
| AjnI | CCWGG | 3 cut(s) | 33, 490, 2202 |
| Alw21I | GWGCWC | 3 cut(s) | 973, 1662, 2773 |
| Alw26I | GTCTC | 3 cut(s) | 860, 1905, 1914 |
| AlwI | GGATC | 6 cut(s) | 24, 589, 640, 2175, 2678, 2720 |
| Ama87I | CYCGRG | 1 cut(s) | 503 |
| ApaI | GGGCCC | 1 cut(s) | 1163 |
| ApeKI | GCWGC | 7 cut(s) | 58, 158, 270, 727, 1746, 3231, 3234 |
| ApoI | RAATTY | 9 cut(s) | 461, 568, 1985, 2366, 2403, 2800, 2993, 3181, 3296 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 84, 116, 185, 217, 1786, 1818 |
| AseI | ATTAAT | 1 cut(s) | 2657 |
| AsiGI | ACCGGT | 1 cut(s) | 3072 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1924, 2995 |
| AspLEI | GCGC | 2 cut(s) | 99, 233 |
| AspS9I | GGNCC | 5 cut(s) | 923, 1159, 1160, 1235, 3170 |
| AsuHPI | GGTGA | 6 cut(s) | 76, 412, 2261, 2439, 2969, 3024 |
| AsuII | TTCGAA | 1 cut(s) | 3044 |
| AsuNHI | GCTAGC | 1 cut(s) | 788 |
| AvaI | CYCGRG | 1 cut(s) | 503 |
| AvaII | GGWCC | 3 cut(s) | 923, 1235, 3170 |
| BaeGI | GKGCMC | 2 cut(s) | 268, 1163 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 354, 387 |
| BanI | GGYRCC | 3 cut(s) | 1366, 2130, 2416 |
| BanII | GRGCYC | 3 cut(s) | 1163, 1662, 2650 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 619, 651, 934, 966 |
| BauI | CACGAG | 1 cut(s) | 913 |
| Bbv12I | GWGCWC | 3 cut(s) | 973, 1662, 2773 |
| BbvI | GCAGC | 7 cut(s) | 45, 145, 257, 714, 1733, 3243, 3246 |
| BceAI | ACGGC | 3 cut(s) | 218, 263, 3120 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 458, 492 |
| BciT130I | CCWGG | 3 cut(s) | 35, 492, 2204 |
| BclI | TGATCA | 2 cut(s) | 1000, 1303 |
| BcoDI | GTCTC | 3 cut(s) | 860, 1905, 1914 |
| BfmI | CTRYAG | 3 cut(s) | 477, 728, 1408 |
| BfuAI | ACCTGC | 1 cut(s) | 484 |
| BglII | AGATCT | 1 cut(s) | 1150 |
| BmcAI | AGTACT | 1 cut(s) | 2902 |
| Bme1390I | CCNGG | 3 cut(s) | 35, 492, 2204 |
| Bme18I | GGWCC | 3 cut(s) | 923, 1235, 3170 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1114 |
| BmeT110I | CYCGRG | 1 cut(s) | 503 |
| BmgBI | CACGTC | 1 cut(s) | 2969 |
| BmgT120I | GGNCC | 5 cut(s) | 923, 1159, 1160, 1235, 3170 |
| BmrFI | CCNGG | 3 cut(s) | 35, 492, 2204 |
| BmrI | ACTGGG | 1 cut(s) | 1924 |
| BmtI | GCTAGC | 1 cut(s) | 792 |
| BmuI | ACTGGG | 1 cut(s) | 1924 |
| BpmI | CTGGAG | 2 cut(s) | 767, 1071 |
| Bpu14I | TTCGAA | 1 cut(s) | 3044 |
| BpuEI | CTTGAG | 1 cut(s) | 3058 |
| Bsa29I | ATCGAT | 1 cut(s) | 756 |
| BsaBI | GATNNNNATC | 2 cut(s) | 543, 2278 |
| BsaHI | GRCGYC | 1 cut(s) | 195 |
| BsaJI | CCNNGG | 7 cut(s) | 105, 468, 504, 2134, 2202, 2984, 3136 |
| BsaWI | WCCGGW | 3 cut(s) | 282, 1010, 3072 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 556, 586 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 40, 61, 68, 274, 491, 505, 1774, 2209 |
| Bse118I | RCCGGY | 2 cut(s) | 61, 3072 |
| Bse1I | ACTGG | 8 cut(s) | 190, 320, 1552, 1930, 2319, 2808, 3106, 3216 |
| Bse3DI | GCAATG | 2 cut(s) | 2819, 3295 |
| Bse8I | GATNNNNATC | 2 cut(s) | 543, 2278 |
| BseBI | CCWGG | 3 cut(s) | 35, 492, 2204 |
| BseCI | ATCGAT | 1 cut(s) | 756 |
| BseDI | CCNNGG | 7 cut(s) | 105, 468, 504, 2134, 2202, 2984, 3136 |
| BseJI | GATNNNNATC | 2 cut(s) | 543, 2278 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 40, 61, 68, 274, 491, 505, 1774, 2209 |
| BseMI | GCAATG | 2 cut(s) | 2819, 3295 |
| BseNI | ACTGG | 8 cut(s) | 190, 320, 1552, 1930, 2319, 2808, 3106, 3216 |
| BseRI | GAGGAG | 2 cut(s) | 1282, 1483 |
| BseSI | GKGCMC | 2 cut(s) | 268, 1163 |
| BseX3I | CGGCCG | 1 cut(s) | 2875 |
| BseXI | GCAGC | 7 cut(s) | 45, 145, 257, 714, 1733, 3243, 3246 |
| BseYI | CCCAGC | 2 cut(s) | 1095, 2036 |
| BsgI | GTGCAG | 1 cut(s) | 333 |
| Bsh1236I | CGCG | 2 cut(s) | 99, 107 |
| Bsh1285I | CGRYCG | 2 cut(s) | 2111, 2878 |
| BshNI | GGYRCC | 3 cut(s) | 1366, 2130, 2416 |
| BshTI | ACCGGT | 1 cut(s) | 3072 |
| BshVI | ATCGAT | 1 cut(s) | 756 |
| BsiEI | CGRYCG | 2 cut(s) | 2111, 2878 |
| BsiHKAI | GWGCWC | 3 cut(s) | 973, 1662, 2773 |
| BsiHKCI | CYCGRG | 1 cut(s) | 503 |
| BsiSI | CCGG | 4 cut(s) | 62, 283, 1011, 3073 |
| BslFI | GGGAC | 1 cut(s) | 1827 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 40, 61, 68, 274, 491, 505, 1774, 2209 |
| BsmAI | GTCTC | 3 cut(s) | 860, 1905, 1914 |
| BsmFI | GGGAC | 1 cut(s) | 1827 |
| BsmI | GAATGC | 2 cut(s) | 1351, 2500 |
| BsoBI | CYCGRG | 1 cut(s) | 503 |
| Bsp119I | TTCGAA | 1 cut(s) | 3044 |
| Bsp120I | GGGCCC | 1 cut(s) | 1159 |
| Bsp1286I | GDGCHC | 6 cut(s) | 268, 973, 1163, 1662, 2650, 2773 |
| Bsp1407I | TGTACA | 1 cut(s) | 941 |
| BspDI | ATCGAT | 1 cut(s) | 756 |
| BspFNI | CGCG | 2 cut(s) | 99, 107 |
| BspHI | TCATGA | 2 cut(s) | 1981, 2490 |
| BspMAI | CTGCAG | 3 cut(s) | 481, 732, 1412 |
| BspMI | ACCTGC | 1 cut(s) | 484 |
| BspOI | GCTAGC | 1 cut(s) | 792 |
| BspPI | GGATC | 6 cut(s) | 24, 589, 640, 2175, 2678, 2720 |
| BspQI | GCTCTTC | 2 cut(s) | 1149, 2220 |
| BspT104I | TTCGAA | 1 cut(s) | 3044 |
| BspT107I | GGYRCC | 3 cut(s) | 1366, 2130, 2416 |
| BsrBI | CCGCTC | 3 cut(s) | 2149, 2880, 3058 |
| BsrDI | GCAATG | 2 cut(s) | 2819, 3295 |
| BsrFI | RCCGGY | 2 cut(s) | 61, 3072 |
| BsrGI | TGTACA | 1 cut(s) | 941 |
| BsrI | ACTGG | 8 cut(s) | 190, 320, 1552, 1930, 2319, 2808, 3106, 3216 |
| BssAI | RCCGGY | 2 cut(s) | 61, 3072 |
| BssECI | CCNNGG | 7 cut(s) | 105, 468, 504, 2134, 2202, 2984, 3136 |
| BssNI | GRCGYC | 1 cut(s) | 195 |
| BssSI | CACGAG | 1 cut(s) | 913 |
| BssT1I | CCWWGG | 2 cut(s) | 2134, 2984 |
| Bst2BI | CACGAG | 1 cut(s) | 913 |
| Bst2UI | CCWGG | 3 cut(s) | 35, 492, 2204 |
| Bst6I | CTCTTC | 6 cut(s) | 209, 1149, 1300, 2202, 2220, 2832 |
| BstACI | GRCGYC | 1 cut(s) | 195 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2130 |
| BstAUI | TGTACA | 1 cut(s) | 941 |
| BstBI | TTCGAA | 1 cut(s) | 3044 |
| BstC8I | GCNNGC | 7 cut(s) | 49, 85, 268, 344, 348, 352, 790 |
| BstDSI | CCRYGG | 2 cut(s) | 105, 3136 |
| BstEII | GGTNACC | 1 cut(s) | 400 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2207 |
| BstFNI | CGCG | 2 cut(s) | 99, 107 |
| BstHHI | GCGC | 2 cut(s) | 99, 233 |
| BstMAI | GTCTC | 3 cut(s) | 860, 1905, 1914 |
| BstMCI | CGRYCG | 2 cut(s) | 2111, 2878 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 164, 237, 267, 1472, 2130, 2609, 2705, 3055 |
| BstNI | CCWGG | 3 cut(s) | 35, 492, 2204 |
| BstNSI | RCATGY | 5 cut(s) | 8, 727, 1256, 1649, 2620 |
| BstPI | GGTNACC | 1 cut(s) | 400 |
| BstSCI | CCNGG | 3 cut(s) | 33, 490, 2202 |
| BstSFI | CTRYAG | 3 cut(s) | 477, 728, 1408 |
| BstSLI | GKGCMC | 2 cut(s) | 268, 1163 |
| BstUI | CGCG | 2 cut(s) | 99, 107 |
| BstV1I | GCAGC | 7 cut(s) | 45, 145, 257, 714, 1733, 3243, 3246 |
| BstX2I | RGATCY | 4 cut(s) | 16, 632, 1150, 2167 |
| BstYI | RGATCY | 4 cut(s) | 16, 632, 1150, 2167 |
| BstZI | CGGCCG | 1 cut(s) | 2875 |
| Bsu15I | ATCGAT | 1 cut(s) | 756 |
| BsuTUI | ATCGAT | 1 cut(s) | 756 |
| BtgI | CCRYGG | 2 cut(s) | 105, 3136 |
| BtrI | CACGTC | 1 cut(s) | 2969 |
| BtsI | GCAGTG | 2 cut(s) | 1083, 1249 |
| BveI | ACCTGC | 1 cut(s) | 484 |
| Cac8I | GCNNGC | 7 cut(s) | 49, 85, 268, 344, 348, 352, 790 |
| CciI | TCATGA | 2 cut(s) | 1981, 2490 |
| CciNI | GCGGCCGC | 1 cut(s) | 2875 |
| CfoI | GCGC | 2 cut(s) | 99, 233 |
| Cfr10I | RCCGGY | 2 cut(s) | 61, 3072 |
| Cfr13I | GGNCC | 5 cut(s) | 923, 1159, 1160, 1235, 3170 |
| Cfr42I | CCGCGG | 1 cut(s) | 108 |
| ClaI | ATCGAT | 1 cut(s) | 756 |
| CseI | GACGC | 1 cut(s) | 88 |
| Csp6I | GTAC | 9 cut(s) | 286, 942, 1338, 1499, 2390, 2433, 2614, 2901, 3076 |
| CspAI | ACCGGT | 1 cut(s) | 3072 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3148, 3183 |
| CviQI | GTAC | 9 cut(s) | 286, 942, 1338, 1499, 2390, 2433, 2614, 2901, 3076 |
| DraIII | CACNNNGTG | 1 cut(s) | 2130 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1114 |
| EaeI | YGGCCR | 2 cut(s) | 108, 2875 |
| EagI | CGGCCG | 1 cut(s) | 2875 |
| Eam1104I | CTCTTC | 6 cut(s) | 209, 1149, 1300, 2202, 2220, 2832 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1114 |
| EarI | CTCTTC | 6 cut(s) | 209, 1149, 1300, 2202, 2220, 2832 |
| EciI | GGCGGA | 2 cut(s) | 1776, 2805 |
| Ecl136II | GAGCTC | 1 cut(s) | 1660 |
| EclXI | CGGCCG | 1 cut(s) | 2875 |
| Eco130I | CCWWGG | 2 cut(s) | 2134, 2984 |
| Eco147I | AGGCCT | 2 cut(s) | 393, 2085 |
| Eco24I | GRGCYC | 3 cut(s) | 1163, 1662, 2650 |
| Eco32I | GATATC | 1 cut(s) | 879 |
| Eco47I | GGWCC | 3 cut(s) | 923, 1235, 3170 |
| Eco52I | CGGCCG | 1 cut(s) | 2875 |
| Eco53kI | GAGCTC | 1 cut(s) | 1660 |
| Eco57I | CTGAAG | 6 cut(s) | 416, 621, 876, 1139, 1249, 1793 |
| Eco88I | CYCGRG | 1 cut(s) | 503 |
| Eco91I | GGTNACC | 1 cut(s) | 400 |
| EcoICRI | GAGCTC | 1 cut(s) | 1660 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2207 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1159 |
| EcoO65I | GGTNACC | 1 cut(s) | 400 |
| EcoRI | GAATTC | 2 cut(s) | 2800, 3181 |
| EcoRII | CCWGG | 3 cut(s) | 33, 490, 2202 |
| EcoRV | GATATC | 1 cut(s) | 879 |
| EcoT14I | CCWWGG | 2 cut(s) | 2134, 2984 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 3 cut(s) | 1163, 1662, 2650 |
| ErhI | CCWWGG | 2 cut(s) | 2134, 2984 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1646, 1678, 2199, 2231 |
| FaqI | GGGAC | 1 cut(s) | 1827 |
| FauI | CCCGC | 2 cut(s) | 266, 275 |
| FbaI | TGATCA | 2 cut(s) | 1000, 1303 |
| FblI | GTMKAC | 2 cut(s) | 1107, 3118 |
| FriOI | GRGCYC | 3 cut(s) | 1163, 1662, 2650 |
| GlaI | GCGC | 2 cut(s) | 98, 232 |
| GsaI | CCCAGC | 2 cut(s) | 1099, 2040 |
| GsuI | CTGGAG | 2 cut(s) | 767, 1071 |
| HapII | CCGG | 4 cut(s) | 62, 283, 1011, 3073 |
| HgaI | GACGC | 1 cut(s) | 88 |
| HhaI | GCGC | 2 cut(s) | 99, 233 |
| Hin1I | GRCGYC | 1 cut(s) | 195 |
| Hin6I | GCGC | 2 cut(s) | 97, 231 |
| HinP1I | GCGC | 2 cut(s) | 97, 231 |
| HincII | GTYRAC | 4 cut(s) | 453, 1952, 2307, 3119 |
| HindII | GTYRAC | 4 cut(s) | 453, 1952, 2307, 3119 |
| HindIII | AAGCTT | 2 cut(s) | 1685, 2459 |
| HpaII | CCGG | 4 cut(s) | 62, 283, 1011, 3073 |
| HphI | GGTGA | 6 cut(s) | 76, 412, 2261, 2439, 2969, 3024 |
| Hpy166II | GTNNAC | 9 cut(s) | 313, 453, 901, 1108, 1235, 1952, 2307, 2479, 3119 |
| Hpy8I | GTNNAC | 9 cut(s) | 313, 453, 901, 1108, 1235, 1952, 2307, 2479, 3119 |
| Hpy99I | CGWCG | 3 cut(s) | 104, 197, 200 |
| HpyCH4IV | ACGT | 2 cut(s) | 195, 2968 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 164, 237, 267, 1472, 2130, 2609, 2705, 3055 |
| HpySE526I | ACGT | 2 cut(s) | 195, 2968 |
| Hsp92I | GRCGYC | 1 cut(s) | 195 |
| HspAI | GCGC | 2 cut(s) | 97, 231 |
| Ksp22I | TGATCA | 2 cut(s) | 1000, 1303 |
| KspI | CCGCGG | 1 cut(s) | 108 |
| LguI | GCTCTTC | 2 cut(s) | 1149, 2220 |
| LmnI | GCTCC | 8 cut(s) | 30, 211, 748, 1048, 1052, 1496, 1657, 2326 |
| Lsp1109I | GCAGC | 7 cut(s) | 45, 145, 257, 714, 1733, 3243, 3246 |
| MaeII | ACGT | 2 cut(s) | 195, 2968 |
| MaeIII | GTNAC | 8 cut(s) | 178, 188, 326, 400, 1561, 1739, 2572, 2852 |
| MbiI | CCGCTC | 3 cut(s) | 2149, 2880, 3058 |
| MfeI | CAATTG | 1 cut(s) | 1693 |
| MflI | RGATCY | 4 cut(s) | 16, 632, 1150, 2167 |
| MhlI | GDGCHC | 6 cut(s) | 268, 973, 1163, 1662, 2650, 2773 |
| MlyI | GAGTC | 7 cut(s) | 944, 995, 1103, 1124, 1809, 2837, 3251 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1924, 2995 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2484, 2763 |
| MspA1I | CMGCKG | 5 cut(s) | 107, 261, 270, 1746, 2874 |
| MspI | CCGG | 4 cut(s) | 62, 283, 1011, 3073 |
| MspR9I | CCNGG | 3 cut(s) | 35, 492, 2204 |
| MunI | CAATTG | 1 cut(s) | 1693 |
| Mva1269I | GAATGC | 2 cut(s) | 1351, 2500 |
| MvaI | CCWGG | 3 cut(s) | 35, 492, 2204 |
| MvnI | CGCG | 2 cut(s) | 99, 107 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 164, 237, 267, 1472, 2130, 2609, 2705, 3055 |
| NheI | GCTAGC | 1 cut(s) | 788 |
| NmeAIII | GCCGAG | 1 cut(s) | 193 |
| NmuCI | GTSAC | 4 cut(s) | 178, 326, 400, 2852 |
| NotI | GCGGCCGC | 1 cut(s) | 2875 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 5 cut(s) | 8, 727, 1256, 1649, 2620 |
| NspV | TTCGAA | 1 cut(s) | 3044 |
| PagI | TCATGA | 2 cut(s) | 1981, 2490 |
| PceI | AGGCCT | 2 cut(s) | 393, 2085 |
| PciSI | GCTCTTC | 2 cut(s) | 1149, 2220 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 75 |
| PctI | GAATGC | 2 cut(s) | 1351, 2500 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1924, 2995 |
| PflFI | GACNNNGTC | 1 cut(s) | 324 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1774 |
| PinAI | ACCGGT | 1 cut(s) | 3072 |
| Ple19I | CGATCG | 1 cut(s) | 2111 |
| PleI | GAGTC | 7 cut(s) | 943, 994, 1103, 1123, 1809, 2837, 3251 |
| PpsI | GAGTC | 7 cut(s) | 943, 994, 1103, 1123, 1809, 2837, 3251 |
| PshBI | ATTAAT | 1 cut(s) | 2657 |
| PsiI | TTATAA | 1 cut(s) | 1730 |
| Psp124BI | GAGCTC | 1 cut(s) | 1662 |
| Psp6I | CCWGG | 3 cut(s) | 33, 490, 2202 |
| PspEI | GGTNACC | 1 cut(s) | 400 |
| PspFI | CCCAGC | 2 cut(s) | 1095, 2036 |
| PspGI | CCWGG | 3 cut(s) | 33, 490, 2202 |
| PspOMI | GGGCCC | 1 cut(s) | 1159 |
| PspPI | GGNCC | 5 cut(s) | 923, 1159, 1160, 1235, 3170 |
| PstI | CTGCAG | 3 cut(s) | 481, 732, 1412 |
| PsuI | RGATCY | 4 cut(s) | 16, 632, 1150, 2167 |
| PsyI | GACNNNGTC | 1 cut(s) | 324 |
| PvuI | CGATCG | 1 cut(s) | 2111 |
| PvuII | CAGCTG | 1 cut(s) | 1746 |
| RsaI | GTAC | 9 cut(s) | 287, 943, 1339, 1500, 2391, 2434, 2615, 2902, 3077 |
| RsaNI | GTAC | 9 cut(s) | 286, 942, 1338, 1499, 2390, 2433, 2614, 2901, 3076 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2484, 2763 |
| SacI | GAGCTC | 1 cut(s) | 1662 |
| SacII | CCGCGG | 1 cut(s) | 108 |
| SalI | GTCGAC | 1 cut(s) | 3117 |
| SapI | GCTCTTC | 2 cut(s) | 1149, 2220 |
| Sau96I | GGNCC | 5 cut(s) | 923, 1159, 1160, 1235, 3170 |
| ScaI | AGTACT | 1 cut(s) | 2902 |
| SchI | GAGTC | 7 cut(s) | 944, 995, 1103, 1124, 1809, 2837, 3251 |
| ScrFI | CCNGG | 3 cut(s) | 35, 492, 2204 |
| SduI | GDGCHC | 6 cut(s) | 268, 973, 1163, 1662, 2650, 2773 |
| SfcI | CTRYAG | 3 cut(s) | 477, 728, 1408 |
| Sfr303I | CCGCGG | 1 cut(s) | 108 |
| SfuI | TTCGAA | 1 cut(s) | 3044 |
| SgrBI | CCGCGG | 1 cut(s) | 108 |
| SinI | GGWCC | 3 cut(s) | 923, 1235, 3170 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2484, 2763 |
| SmlI | CTYRAG | 1 cut(s) | 3037 |
| SmoI | CTYRAG | 1 cut(s) | 3037 |
| SseBI | AGGCCT | 2 cut(s) | 393, 2085 |
| SstI | GAGCTC | 1 cut(s) | 1662 |
| StuI | AGGCCT | 2 cut(s) | 393, 2085 |
| StyD4I | CCNGG | 3 cut(s) | 33, 490, 2202 |
| StyI | CCWWGG | 2 cut(s) | 2134, 2984 |
| TaiI | ACGT | 2 cut(s) | 198, 2971 |
| TaqI | TCGA | 6 cut(s) | 756, 2107, 2111, 2184, 3044, 3118 |
| TatI | WGTACW | 3 cut(s) | 941, 1337, 2900 |
| TauI | GCSGC | 7 cut(s) | 107, 110, 2152, 2501, 2877, 2880, 3058 |
| TseFI | GTSAC | 4 cut(s) | 178, 326, 400, 2852 |
| TseI | GCWGC | 7 cut(s) | 58, 158, 270, 727, 1746, 3231, 3234 |
| Tsp45I | GTSAC | 4 cut(s) | 178, 326, 400, 2852 |
| TspGWI | ACGGA | 2 cut(s) | 1656, 2008 |
| Tth111I | GACNNNGTC | 1 cut(s) | 324 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1774 |
| VpaK11BI | GGWCC | 3 cut(s) | 923, 1235, 3170 |
| VspI | ATTAAT | 1 cut(s) | 2657 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2207 |
| XapI | RAATTY | 9 cut(s) | 461, 568, 1985, 2366, 2403, 2800, 2993, 3181, 3296 |
| XbaI | TCTAGA | 1 cut(s) | 1427 |
| XceI | RCATGY | 5 cut(s) | 8, 727, 1256, 1649, 2620 |
| XmiI | GTMKAC | 2 cut(s) | 1107, 3118 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1924, 2995 |
| ZraI | GACGTC | 1 cut(s) | 196 |
| ZrmI | AGTACT | 1 cut(s) | 2902 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |