Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007452

Physical Location & Seq

Genomic Coordinates Forward (+)

29776319 .. 29784271

Gene Structure 7953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0300500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGCATCGAGTTATGTTTTGAACTTGGTGAATTCTACGTTGGATTGGGTGACAGCGACTTTAGATGCTCCCTCCTCCAGAGCTGTTGTTTTTGGAGTGCCGATTGGCGGACATCTTTTTGTAGAAGTACTTCTTTTTGCAGTCATTGTTTTTCTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGGAAATAGATGATCTATGTGAGGAATGGGTTCCTGAACCTCTCATTCCTCCTATCACAGAAGATATGCAGTATGAACCCCCAGTGTTGGAAAGTGCTGCAGGGCCACATACAATAGTCAATGGCAAAGAAGTAGTGAACTTTGCTGAAGCAAATTATCTTGGATTGATAGGACATGAGAAGTTGCTTGAGTCATGTACATCTGCATTGGAGAAATATGGTGTTGGTTCATGTGGTCCTCGTGGGTTCTATGGAACAATTGATGTCCACCTTGATTGTGAGGCAAGAATAGCAAAGTTTTTGGGAACTCCTGACTCAATTCTCTATTCTTATGGTCTCTCCACCATGTTCAGTGCAATTCCAGCATTTTGCAAAAAAGGAGATATCATTGTTGTGGATGAAGGAGTCCATTGGGGAATACAAAATGGTCTTCATCTTTCTAGAAGCACAATTGTGTATTTCAAGCATAATGACATGGAATCATTAAGGAATACTCTGGAGGAAATCACTCTGAAGAATAAGCGGGCTAAGAAACTCCGGCGCTATATTGTGGTTGAAGCTGTGTACCAGAATTCTGGCCAAATAGCCCCCTTGGGCGAAATTGTTAAATTGAAGGAGAAATATAGGTTTCGTGTTTTATTAGATGAGAGCAACTCATTTGGTGTCCTTGGAAAAGCTGGACGAGGTCTCACAGAATTTTGCGGGGTTCTGGTTGAAAAGATAGATATAATTACTGCTGCAATGGGACACGCCTTAGCCGCAGAAGGAGGATTCTGCACTGGAAGTGCTAGAGTTACTGATCACCAGCGATTGAGCAGTTCTGGGTACGTCTTTTCTGCTTCTTTGCCCCCATATCTTGCGAGTGCTGCCATTACTGCCATTGATGTTCTTGAGGAGAACCCTGATCTGATAACGAAGTTGAAGAAAAACATTACGTTACTATGGAAAGGATTGTCAGGTGTAATGGGCCTCTCATTAGCAAGCAATCCAGAATCACCTATTGTGTTTCTCAAACTACAGAAGTCAACAAGTTCTGTGAAGGGTGACCTGCAACTCCTCAACGAAATTGCTGACCATTTGTTAAAGGATCATTCAATTCTTGCGGTGGCGTCCAAAAGGTCAACACTTGATAAATGTCGTTTGCCTGTGGGAATTAGACTGTTTGTTTCTGCTGCCCATTCCGAATCAGATCTACTGAAGGCATCAGAGTCACTGAAAACGGTTGCTGAATCAGTGCTGAAGAATCATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008283 GO:0009628 GO:0009651 GO:0009791 GO:0009908 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048364 GO:0048366 GO:0048367 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080134 GO:0090567 GO:0099402 GO:0101005 GO:0140096 GO:1901000 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

484

Amino Acids

52.77

Weight (kDa)

6.37

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	111 - 471	3.4e-36	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24560
fragaria_vesca	FvH4_5g35500 FvH4_5g35500 FvH4_5g35500 FvH4_5g35500
malus_domestica	MD08G1196200.v1.1 MD15G1384000.v1.1
prunus_persica	Prupe.1G530100_v2.0.a1 Prupe.1G530100_v2.0.a1
pyrus_communis	pycom08g16850 pycom15g34370
rosa_chinensis	RchiOBHm_Chr7g0236881
rosa_laevigata	RLG00000001053
rosa_multiflora	Rmu_co8158526.1_g000001 Rmu_sc0002867.1_g000006 Rmu_sc0017481.1_g000004 Rmu_sc0032933.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224730
rosa_rugosa	Rorug07G0300500 Rorug07G0300600
rosa_samantha	Rh7AG455400 Rh7BG426600 Rh7CG474200 Rh7DG443400
rosa_wichuraiana	Rw7G037810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1257
AciI	CCGC	5 cut(s)	108, 724, 903, 960, 1304
AclWI	GGATC	1 cut(s)	1296
AcoI	YGGCCR	1 cut(s)	778
AcsI	RAATTY	3 cut(s)	31, 772, 896
AcuI	CTGAAG	3 cut(s)	369, 734, 1418
AcyI	GRCGYC	1 cut(s)	1310
AfaI	GTAC	4 cut(s)	129, 400, 767, 1028
AfiI	CCNNNNNNNGG	2 cut(s)	107, 289
AgsI	TTSAA	7 cut(s)	22, 664, 758, 814, 917, 1123, 1296
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AleI	CACNNNNGTG	1 cut(s)	653
AluBI	AGCT	3 cut(s)	83, 761, 878
AluI	AGCT	3 cut(s)	83, 761, 878
Alw26I	GTCTC	2 cut(s)	542, 893
AlwI	GGATC	1 cut(s)	1296
AoxI	GGCC	3 cut(s)	305, 778, 1168
ApeKI	GCWGC	4 cut(s)	299, 938, 1067, 1373
ApoI	RAATTY	3 cut(s)	31, 772, 896
Asp700I	GAANNNNTTC	2 cut(s)	129, 231
AspLEI	GCGC	1 cut(s)	744
AspS9I	GGNCC	3 cut(s)	305, 437, 1168
AsuHPI	GGTGA	5 cut(s)	40, 61, 995, 1188, 1256
AvaII	GGWCC	1 cut(s)	437
BalI	TGGCCA	1 cut(s)	780
BarI	GAAGNNNNNNTAC	2 cut(s)	114, 146
BauI	CACGAG	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	623
BbvI	GCAGC	4 cut(s)	286, 925, 1054, 1360
BclI	TGATCA	1 cut(s)	1000
BcoDI	GTCTC	2 cut(s)	542, 893
BfaI	CTAG	2 cut(s)	642, 990
BfmI	CTRYAG	2 cut(s)	300, 1217
BfoI	RGCGCY	1 cut(s)	745
BfuAI	ACCTGC	1 cut(s)	1257
BglII	AGATCT	1 cut(s)	1390
BisI	GCNGC	5 cut(s)	300, 939, 960, 1068, 1374
BlsI	GCNGC	5 cut(s)	301, 940, 961, 1069, 1375
BmcAI	AGTACT	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	3 cut(s)	305, 437, 1168
BmiI	GGNNCC	1 cut(s)	234
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	3 cut(s)	14, 55, 1412
BmuI	ACTGGG	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	623
BplI	GAGNNNNNCTC	2 cut(s)	839, 871
BpmI	CTGGAG	2 cut(s)	61, 719
Bpu10I	CCTNAGC	1 cut(s)	955
BpuEI	CTTGAG	2 cut(s)	410, 1112
BsaHI	GRCGYC	1 cut(s)	1310
BsaI	GGTCTC	2 cut(s)	542, 893
BsaJI	CCNNGG	2 cut(s)	792, 868
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 289
Bse1I	ACTGG	2 cut(s)	284, 985
Bse3DI	GCAATG	1 cut(s)	948
BseDI	CCNNGG	2 cut(s)	792, 868
BseGI	GGATG	1 cut(s)	604
BseLI	CCNNNNNNNGG	2 cut(s)	107, 289
BseMI	GCAATG	1 cut(s)	948
BseNI	ACTGG	2 cut(s)	284, 985
BseRI	GAGGAG	3 cut(s)	64, 1109, 1247
BseXI	GCAGC	4 cut(s)	286, 925, 1054, 1360
BsgI	GTGCAG	1 cut(s)	961
BshFI	GGCC	3 cut(s)	307, 780, 1170
BsiSI	CCGG	1 cut(s)	739
BslFI	GGGAC	1 cut(s)	960
BslI	CCNNNNNNNGG	2 cut(s)	107, 289
BsmAI	GTCTC	2 cut(s)	542, 893
BsmFI	GGGAC	1 cut(s)	960
BsnI	GGCC	3 cut(s)	307, 780, 1170
Bso31I	GGTCTC	2 cut(s)	542, 893
Bsp1407I	TGTACA	1 cut(s)	398
Bsp143I	GATC	5 cut(s)	214, 1000, 1105, 1288, 1390
BspACI	CCGC	5 cut(s)	108, 724, 903, 960, 1304
BspANI	GGCC	3 cut(s)	307, 780, 1170
BspLI	GGNNCC	1 cut(s)	234
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	1257
BspPI	GGATC	1 cut(s)	1296
BspTNI	GGTCTC	2 cut(s)	542, 893
BsrDI	GCAATG	1 cut(s)	948
BsrGI	TGTACA	1 cut(s)	398
BsrI	ACTGG	2 cut(s)	284, 985
BssECI	CCNNGG	2 cut(s)	792, 868
BssMI	GATC	5 cut(s)	214, 1000, 1105, 1288, 1390
BssNI	GRCGYC	1 cut(s)	1310
BssSI	CACGAG	1 cut(s)	441
BssT1I	CCWWGG	2 cut(s)	792, 868
Bst2BI	CACGAG	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	1362, 1423
BstACI	GRCGYC	1 cut(s)	1310
BstAUI	TGTACA	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	726, 1183
BstDEI	CTNAG	3 cut(s)	183, 729, 955
BstEII	GGTNACC	1 cut(s)	1244
BstF5I	GGATG	1 cut(s)	604
BstH2I	RGCGCY	1 cut(s)	745
BstHHI	GCGC	1 cut(s)	744
BstKTI	GATC	5 cut(s)	217, 1003, 1108, 1291, 1393
BstMAI	GTCTC	2 cut(s)	542, 893
BstMBI	GATC	5 cut(s)	214, 1000, 1105, 1288, 1390
BstMWI	GCNNNNNNNGC	5 cut(s)	491, 563, 959, 1067, 1076
BstPI	GGTNACC	1 cut(s)	1244
BstSFI	CTRYAG	2 cut(s)	300, 1217
BstV1I	GCAGC	4 cut(s)	286, 925, 1054, 1360
BstV2I	GAAGAC	1 cut(s)	623
BstX2I	RGATCY	1 cut(s)	1390
BstXI	CCANNNNNNTGG	1 cut(s)	776
BstYI	RGATCY	1 cut(s)	1390
BsuRI	GGCC	3 cut(s)	307, 780, 1170
BtsCI	GGATG	1 cut(s)	604
BtsIMutI	CAGTG	5 cut(s)	291, 559, 978, 1412, 1440
BveI	ACCTGC	1 cut(s)	1257
Cac8I	GCNNGC	2 cut(s)	726, 1183
CfoI	GCGC	1 cut(s)	744
Cfr13I	GGNCC	3 cut(s)	305, 437, 1168
CseI	GACGC	1 cut(s)	1299
Csp6I	GTAC	4 cut(s)	128, 399, 766, 1027
CspCI	CAANNNNNGTGG	2 cut(s)	458, 493
CviAII	CATG	5 cut(s)	377, 396, 432, 547, 676
CviQI	GTAC	4 cut(s)	128, 399, 766, 1027
DdeI	CTNAG	3 cut(s)	183, 729, 955
DpnI	GATC	5 cut(s)	216, 1002, 1107, 1290, 1392
DpnII	GATC	5 cut(s)	214, 1000, 1105, 1288, 1390
EaeI	YGGCCR	1 cut(s)	778
EciI	GGCGGA	1 cut(s)	123
Eco130I	CCWWGG	2 cut(s)	792, 868
Eco31I	GGTCTC	2 cut(s)	542, 893
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	437
Eco57I	CTGAAG	3 cut(s)	369, 734, 1418
Eco91I	GGTNACC	1 cut(s)	1244
EcoO65I	GGTNACC	1 cut(s)	1244
EcoRI	GAATTC	2 cut(s)	31, 772
EcoRV	GATATC	1 cut(s)	586
EcoT14I	CCWWGG	2 cut(s)	792, 868
ErhI	CCWWGG	2 cut(s)	792, 868
FaeI	CATG	5 cut(s)	380, 399, 435, 550, 679
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FaqI	GGGAC	1 cut(s)	960
FatI	CATG	5 cut(s)	376, 395, 431, 546, 675
FauI	CCCGC	2 cut(s)	717, 896
FbaI	TGATCA	1 cut(s)	1000
Fnu4HI	GCNGC	5 cut(s)	300, 939, 960, 1068, 1374
FokI	GGATG	1 cut(s)	611
Fsp4HI	GCNGC	5 cut(s)	300, 939, 960, 1068, 1374
FspBI	CTAG	2 cut(s)	642, 990
GlaI	GCGC	1 cut(s)	743
GluI	GCNGC	5 cut(s)	300, 939, 960, 1068, 1374
GsuI	CTGGAG	2 cut(s)	61, 719
HaeII	RGCGCY	1 cut(s)	745
HaeIII	GGCC	3 cut(s)	307, 780, 1170
HapII	CCGG	1 cut(s)	739
HgaI	GACGC	1 cut(s)	1299
HhaI	GCGC	1 cut(s)	744
Hin1I	GRCGYC	1 cut(s)	1310
Hin1II	CATG	5 cut(s)	380, 399, 435, 550, 679
Hin6I	GCGC	1 cut(s)	742
HinP1I	GCGC	1 cut(s)	742
HincII	GTYRAC	2 cut(s)	1227, 1323
HindII	GTYRAC	2 cut(s)	1227, 1323
HpaII	CCGG	1 cut(s)	739
HphI	GGTGA	5 cut(s)	40, 61, 995, 1188, 1256
Hpy166II	GTNNAC	5 cut(s)	340, 469, 766, 1227, 1323
Hpy188I	TCNGA	5 cut(s)	714, 1110, 1384, 1390, 1408
Hpy188III	TCNNGA	7 cut(s)	78, 236, 512, 642, 698, 1091, 1190
Hpy8I	GTNNAC	5 cut(s)	340, 469, 766, 1227, 1323
HpyAV	CCTTC	6 cut(s)	196, 596, 808, 959, 1234, 1393
HpyCH4III	ACNGT	2 cut(s)	1362, 1423
HpyCH4IV	ACGT	3 cut(s)	38, 1029, 1136
HpyCH4V	TGCA	9 cut(s)	140, 271, 302, 407, 557, 573, 941, 978, 1252
HpyF10VI	GCNNNNNNNGC	5 cut(s)	491, 563, 959, 1067, 1076
HpyF3I	CTNAG	3 cut(s)	183, 729, 955
HpySE526I	ACGT	3 cut(s)	38, 1029, 1136
Hsp92I	GRCGYC	1 cut(s)	1310
Hsp92II	CATG	5 cut(s)	380, 399, 435, 550, 679
HspAI	GCGC	1 cut(s)	742
Ksp22I	TGATCA	1 cut(s)	1000
Kzo9I	GATC	5 cut(s)	214, 1000, 1105, 1288, 1390
LmnI	GCTCC	1 cut(s)	73
Lsp1109I	GCAGC	4 cut(s)	286, 925, 1054, 1360
LweI	GCATC	3 cut(s)	14, 55, 1412
MaeI	CTAG	2 cut(s)	642, 990
MaeII	ACGT	3 cut(s)	38, 1029, 1136
MaeIII	GTNAC	6 cut(s)	49, 170, 994, 1137, 1244, 1410
MalI	GATC	5 cut(s)	216, 1002, 1107, 1290, 1392
MboI	GATC	5 cut(s)	214, 1000, 1105, 1288, 1390
MboII	GAAGA	5 cut(s)	275, 623, 727, 1135, 1453
MfeI	CAATTG	2 cut(s)	459, 651
MflI	RGATCY	1 cut(s)	1390
MlsI	TGGCCA	1 cut(s)	780
MluNI	TGGCCA	1 cut(s)	780
MlyI	GAGTC	4 cut(s)	401, 509, 615, 1418
MmeI	TCCRAC	2 cut(s)	21, 270
Mox20I	TGGCCA	1 cut(s)	780
MroXI	GAANNNNTTC	2 cut(s)	129, 231
MscI	TGGCCA	1 cut(s)	780
MseI	TTAA	4 cut(s)	194, 686, 807, 1283
MslI	CAYNNNNRTG	2 cut(s)	593, 653
Msp20I	TGGCCA	1 cut(s)	780
MspI	CCGG	1 cut(s)	739
MunI	CAATTG	2 cut(s)	459, 651
MwoI	GCNNNNNNNGC	5 cut(s)	491, 563, 959, 1067, 1076
NdeII	GATC	5 cut(s)	214, 1000, 1105, 1288, 1390
NlaIII	CATG	5 cut(s)	380, 399, 435, 550, 679
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	3 cut(s)	49, 1244, 1410
OliI	CACNNNNGTG	1 cut(s)	653
PdmI	GAANNNNTTC	2 cut(s)	129, 231
PfeI	GAWTC	6 cut(s)	680, 972, 1193, 1385, 1430, 1444
PflFI	GACNNNGTC	1 cut(s)	885
PkrI	GCNGC	5 cut(s)	301, 940, 961, 1069, 1375
PleI	GAGTC	4 cut(s)	400, 509, 614, 1417
PpsI	GAGTC	4 cut(s)	400, 509, 614, 1417
PspEI	GGTNACC	1 cut(s)	1244
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	3 cut(s)	305, 437, 1168
PstI	CTGCAG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	1390
PsyI	GACNNNGTC	1 cut(s)	885
RsaI	GTAC	4 cut(s)	129, 400, 767, 1028
RsaNI	GTAC	4 cut(s)	128, 399, 766, 1027
RseI	CAYNNNNRTG	2 cut(s)	593, 653
SaqAI	TTAA	4 cut(s)	194, 686, 807, 1283
SatI	GCNGC	5 cut(s)	300, 939, 960, 1068, 1374
Sau3AI	GATC	5 cut(s)	214, 1000, 1105, 1288, 1390
Sau96I	GGNCC	3 cut(s)	305, 437, 1168
ScaI	AGTACT	1 cut(s)	129
SchI	GAGTC	4 cut(s)	401, 509, 615, 1418
SfaNI	GCATC	3 cut(s)	14, 55, 1412
SfcI	CTRYAG	2 cut(s)	300, 1217
SinI	GGWCC	1 cut(s)	437
SmiMI	CAYNNNNRTG	2 cut(s)	593, 653
SmlI	CTYRAG	2 cut(s)	389, 1091
SmoI	CTYRAG	2 cut(s)	389, 1091
SsiI	CCGC	5 cut(s)	108, 724, 903, 960, 1304
SspMI	CTAG	2 cut(s)	642, 990
StyI	CCWWGG	2 cut(s)	792, 868
TaaI	ACNGT	2 cut(s)	1362, 1423
TaiI	ACGT	3 cut(s)	41, 1032, 1139
TaqI	TCGA	1 cut(s)	8
TatI	WGTACW	2 cut(s)	127, 398
TauI	GCSGC	1 cut(s)	962
TfiI	GAWTC	6 cut(s)	680, 972, 1193, 1385, 1430, 1444
Tru1I	TTAA	4 cut(s)	194, 686, 807, 1283
Tru9I	TTAA	4 cut(s)	194, 686, 807, 1283
TscAI	CASTG	5 cut(s)	291, 559, 985, 1419, 1440
TseFI	GTSAC	3 cut(s)	49, 1244, 1410
TseI	GCWGC	4 cut(s)	299, 938, 1067, 1373
Tsp45I	GTSAC	3 cut(s)	49, 1244, 1410
TspDTI	ATGAA	4 cut(s)	291, 420, 615, 623
TspRI	CASTG	5 cut(s)	291, 559, 985, 1419, 1440
Tth111I	GACNNNGTC	1 cut(s)	885
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	3 cut(s)	31, 772, 896
XbaI	TCTAGA	1 cut(s)	641
XmnI	GAANNNNTTC	2 cut(s)	129, 231
XspI	CTAG	2 cut(s)	642, 990
ZrmI	AGTACT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.