ubiquitin carboxyl-terminal hydrolase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G24560 |
| fragaria_vesca | FvH4_5g35500 FvH4_5g35500 FvH4_5g35500 FvH4_5g35500 |
| malus_domestica | MD08G1196200.v1.1 MD15G1384000.v1.1 |
| prunus_persica | Prupe.1G530100_v2.0.a1 Prupe.1G530100_v2.0.a1 |
| pyrus_communis | pycom08g16850 pycom15g34370 |
| rosa_chinensis | RchiOBHm_Chr7g0236881 |
| rosa_laevigata | RLG00000001053 |
| rosa_multiflora | Rmu_co8158526.1_g000001 Rmu_sc0002867.1_g000006 Rmu_sc0017481.1_g000004 Rmu_sc0032933.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00224730 |
| rosa_rugosa | Rorug07G0300500 Rorug07G0300600 |
| rosa_samantha | Rh7AG455400 Rh7BG426600 Rh7CG474200 Rh7DG443400 |
| rosa_wichuraiana | Rw7G037810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1811 |
| AatII | GACGTC | 1 cut(s) | 198 |
| Acc36I | ACCTGC | 1 cut(s) | 484 |
| AccB1I | GGYRCC | 3 cut(s) | 1405, 2211, 2497 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1855 |
| AccBSI | CCGCTC | 3 cut(s) | 2230, 2961, 3139 |
| AccI | GTMKAC | 2 cut(s) | 1107, 3199 |
| AccII | CGCG | 3 cut(s) | 99, 107, 2134 |
| AciI | CCGC | 9 cut(s) | 105, 107, 259, 268, 2134, 2230, 2580, 2959, 3137 |
| AclWI | GGATC | 8 cut(s) | 24, 589, 640, 1047, 1060, 2256, 2759, 2801 |
| AcoI | YGGCCR | 1 cut(s) | 108 |
| AcuI | CTGAAG | 6 cut(s) | 416, 621, 876, 1140, 1288, 1874 |
| AcyI | GRCGYC | 1 cut(s) | 195 |
| AdeI | CACNNNGTG | 1 cut(s) | 2211 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 40, 61, 68, 274, 491, 505, 1855, 2113, 2290 |
| AgeI | ACCGGT | 1 cut(s) | 3153 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1114 |
| AhlI | ACTAGT | 1 cut(s) | 1202 |
| AjiI | CACGTC | 1 cut(s) | 3050 |
| AjnI | CCWGG | 3 cut(s) | 33, 490, 2283 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1220, 1252 |
| Alw21I | GWGCWC | 3 cut(s) | 973, 1743, 2854 |
| Alw26I | GTCTC | 3 cut(s) | 860, 1986, 1995 |
| AlwI | GGATC | 8 cut(s) | 24, 589, 640, 1047, 1060, 2256, 2759, 2801 |
| Ama87I | CYCGRG | 1 cut(s) | 503 |
| AoxI | GGCC | 9 cut(s) | 45, 108, 276, 391, 767, 1160, 1804, 2164, 2373 |
| ApaI | GGGCCC | 1 cut(s) | 1164 |
| ApeKI | GCWGC | 8 cut(s) | 58, 158, 270, 727, 1827, 2955, 3312, 3315 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 84, 116, 185, 217, 1867, 1899 |
| AseI | ATTAAT | 1 cut(s) | 2738 |
| AsiGI | ACCGGT | 1 cut(s) | 3153 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2005, 3076 |
| AspLEI | GCGC | 2 cut(s) | 99, 233 |
| AspS9I | GGNCC | 6 cut(s) | 923, 1160, 1161, 1274, 1670, 3251 |
| AsuHPI | GGTGA | 6 cut(s) | 76, 412, 1207, 2342, 3050, 3105 |
| AsuII | TTCGAA | 1 cut(s) | 3125 |
| AsuNHI | GCTAGC | 2 cut(s) | 443, 788 |
| AvaI | CYCGRG | 1 cut(s) | 503 |
| AvaII | GGWCC | 4 cut(s) | 923, 1274, 1670, 3251 |
| BaeGI | GKGCMC | 2 cut(s) | 268, 1164 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 354, 387 |
| BamHI | GGATCC | 1 cut(s) | 1052 |
| BanI | GGYRCC | 3 cut(s) | 1405, 2211, 2497 |
| BanII | GRGCYC | 4 cut(s) | 973, 1164, 1743, 2731 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 619, 651, 934, 966 |
| BauI | CACGAG | 1 cut(s) | 913 |
| BbsI | GAAGAC | 2 cut(s) | 1205, 1640 |
| Bbv12I | GWGCWC | 3 cut(s) | 973, 1743, 2854 |
| BbvI | GCAGC | 8 cut(s) | 45, 145, 257, 714, 1814, 2967, 3324, 3327 |
| BceAI | ACGGC | 3 cut(s) | 218, 263, 3201 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 458, 492 |
| BciT130I | CCWGG | 3 cut(s) | 35, 492, 2285 |
| BclI | TGATCA | 2 cut(s) | 1000, 1342 |
| BcoDI | GTCTC | 3 cut(s) | 860, 1986, 1995 |
| BcuI | ACTAGT | 1 cut(s) | 1202 |
| BfmI | CTRYAG | 3 cut(s) | 477, 728, 1447 |
| BfuAI | ACCTGC | 1 cut(s) | 484 |
| BmcAI | AGTACT | 1 cut(s) | 2983 |
| Bme1390I | CCNGG | 3 cut(s) | 35, 492, 2285 |
| Bme18I | GGWCC | 4 cut(s) | 923, 1274, 1670, 3251 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1114 |
| BmeT110I | CYCGRG | 1 cut(s) | 503 |
| BmgBI | CACGTC | 1 cut(s) | 3050 |
| BmgT120I | GGNCC | 6 cut(s) | 923, 1160, 1161, 1274, 1670, 3251 |
| BmrFI | CCNGG | 3 cut(s) | 35, 492, 2285 |
| BmrI | ACTGGG | 1 cut(s) | 2005 |
| BmtI | GCTAGC | 2 cut(s) | 447, 792 |
| BmuI | ACTGGG | 1 cut(s) | 2005 |
| BpiI | GAAGAC | 2 cut(s) | 1205, 1640 |
| BpmI | CTGGAG | 2 cut(s) | 767, 2859 |
| Bpu14I | TTCGAA | 1 cut(s) | 3125 |
| BpuEI | CTTGAG | 1 cut(s) | 3139 |
| Bsa29I | ATCGAT | 1 cut(s) | 756 |
| BsaBI | GATNNNNATC | 2 cut(s) | 543, 2359 |
| BsaHI | GRCGYC | 1 cut(s) | 195 |
| BsaJI | CCNNGG | 7 cut(s) | 105, 468, 504, 2215, 2283, 3065, 3217 |
| BsaWI | WCCGGW | 3 cut(s) | 282, 1010, 3153 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 556, 586 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 40, 61, 68, 274, 491, 505, 1855, 2113, 2290 |
| Bse118I | RCCGGY | 2 cut(s) | 61, 3153 |
| Bse3DI | GCAATG | 2 cut(s) | 2900, 3376 |
| Bse8I | GATNNNNATC | 2 cut(s) | 543, 2359 |
| BseBI | CCWGG | 3 cut(s) | 35, 492, 2285 |
| BseCI | ATCGAT | 1 cut(s) | 756 |
| BseDI | CCNNGG | 7 cut(s) | 105, 468, 504, 2215, 2283, 3065, 3217 |
| BseJI | GATNNNNATC | 2 cut(s) | 543, 2359 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 40, 61, 68, 274, 491, 505, 1855, 2113, 2290 |
| BseMI | GCAATG | 2 cut(s) | 2900, 3376 |
| BseRI | GAGGAG | 2 cut(s) | 1321, 1522 |
| BseSI | GKGCMC | 2 cut(s) | 268, 1164 |
| BseXI | GCAGC | 8 cut(s) | 45, 145, 257, 714, 1814, 2967, 3324, 3327 |
| BseYI | CCCAGC | 2 cut(s) | 1095, 2117 |
| BsgI | GTGCAG | 1 cut(s) | 333 |
| Bsh1236I | CGCG | 3 cut(s) | 99, 107, 2134 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2192 |
| BshFI | GGCC | 9 cut(s) | 47, 110, 278, 393, 769, 1162, 1806, 2166, 2375 |
| BshNI | GGYRCC | 3 cut(s) | 1405, 2211, 2497 |
| BshTI | ACCGGT | 1 cut(s) | 3153 |
| BshVI | ATCGAT | 1 cut(s) | 756 |
| BsiEI | CGRYCG | 1 cut(s) | 2192 |
| BsiHKAI | GWGCWC | 3 cut(s) | 973, 1743, 2854 |
| BsiHKCI | CYCGRG | 1 cut(s) | 503 |
| BsiSI | CCGG | 4 cut(s) | 62, 283, 1011, 3154 |
| BslFI | GGGAC | 1 cut(s) | 1908 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 40, 61, 68, 274, 491, 505, 1855, 2113, 2290 |
| BsmAI | GTCTC | 3 cut(s) | 860, 1986, 1995 |
| BsmFI | GGGAC | 1 cut(s) | 1908 |
| BsmI | GAATGC | 2 cut(s) | 1390, 2581 |
| BsnI | GGCC | 9 cut(s) | 47, 110, 278, 393, 769, 1162, 1806, 2166, 2375 |
| BsoBI | CYCGRG | 1 cut(s) | 503 |
| Bsp119I | TTCGAA | 1 cut(s) | 3125 |
| Bsp120I | GGGCCC | 1 cut(s) | 1160 |
| Bsp1286I | GDGCHC | 6 cut(s) | 268, 973, 1164, 1743, 2731, 2854 |
| Bsp1407I | TGTACA | 1 cut(s) | 941 |
| BspACI | CCGC | 9 cut(s) | 105, 107, 259, 268, 2134, 2230, 2580, 2959, 3137 |
| BspANI | GGCC | 9 cut(s) | 47, 110, 278, 393, 769, 1162, 1806, 2166, 2375 |
| BspDI | ATCGAT | 1 cut(s) | 756 |
| BspFNI | CGCG | 3 cut(s) | 99, 107, 2134 |
| BspHI | TCATGA | 2 cut(s) | 2062, 2571 |
| BspMAI | CTGCAG | 3 cut(s) | 481, 732, 1451 |
| BspMI | ACCTGC | 1 cut(s) | 484 |
| BspOI | GCTAGC | 2 cut(s) | 447, 792 |
| BspPI | GGATC | 8 cut(s) | 24, 589, 640, 1047, 1060, 2256, 2759, 2801 |
| BspQI | GCTCTTC | 3 cut(s) | 961, 1149, 2301 |
| BspT104I | TTCGAA | 1 cut(s) | 3125 |
| BspT107I | GGYRCC | 3 cut(s) | 1405, 2211, 2497 |
| BsrBI | CCGCTC | 3 cut(s) | 2230, 2961, 3139 |
| BsrDI | GCAATG | 2 cut(s) | 2900, 3376 |
| BsrFI | RCCGGY | 2 cut(s) | 61, 3153 |
| BsrGI | TGTACA | 1 cut(s) | 941 |
| BssAI | RCCGGY | 2 cut(s) | 61, 3153 |
| BssECI | CCNNGG | 7 cut(s) | 105, 468, 504, 2215, 2283, 3065, 3217 |
| BssNI | GRCGYC | 1 cut(s) | 195 |
| BssSI | CACGAG | 1 cut(s) | 913 |
| BssT1I | CCWWGG | 2 cut(s) | 2215, 3065 |
| Bst2BI | CACGAG | 1 cut(s) | 913 |
| Bst2UI | CCWGG | 3 cut(s) | 35, 492, 2285 |
| Bst6I | CTCTTC | 8 cut(s) | 209, 961, 1149, 1339, 2283, 2301, 2913, 3112 |
| BstACI | GRCGYC | 1 cut(s) | 195 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2211 |
| BstAUI | TGTACA | 1 cut(s) | 941 |
| BstBI | TTCGAA | 1 cut(s) | 3125 |
| BstC8I | GCNNGC | 9 cut(s) | 49, 85, 268, 344, 348, 352, 445, 790, 3402 |
| BstDSI | CCRYGG | 2 cut(s) | 105, 3217 |
| BstEII | GGTNACC | 1 cut(s) | 400 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2111, 2288 |
| BstFNI | CGCG | 3 cut(s) | 99, 107, 2134 |
| BstHHI | GCGC | 2 cut(s) | 99, 233 |
| BstMAI | GTCTC | 3 cut(s) | 860, 1986, 1995 |
| BstMCI | CGRYCG | 1 cut(s) | 2192 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 164, 237, 267, 1511, 2211, 2690, 2786, 3136 |
| BstNI | CCWGG | 3 cut(s) | 35, 492, 2285 |
| BstNSI | RCATGY | 5 cut(s) | 8, 727, 1295, 1730, 2701 |
| BstPI | GGTNACC | 1 cut(s) | 400 |
| BstSCI | CCNGG | 3 cut(s) | 33, 490, 2283 |
| BstSFI | CTRYAG | 3 cut(s) | 477, 728, 1447 |
| BstSLI | GKGCMC | 2 cut(s) | 268, 1164 |
| BstUI | CGCG | 3 cut(s) | 99, 107, 2134 |
| BstV1I | GCAGC | 8 cut(s) | 45, 145, 257, 714, 1814, 2967, 3324, 3327 |
| BstV2I | GAAGAC | 2 cut(s) | 1205, 1640 |
| BstX2I | RGATCY | 4 cut(s) | 16, 632, 1052, 2248 |
| BstYI | RGATCY | 4 cut(s) | 16, 632, 1052, 2248 |
| Bsu15I | ATCGAT | 1 cut(s) | 756 |
| BsuRI | GGCC | 9 cut(s) | 47, 110, 278, 393, 769, 1162, 1806, 2166, 2375 |
| BsuTUI | ATCGAT | 1 cut(s) | 756 |
| BtgI | CCRYGG | 2 cut(s) | 105, 3217 |
| BtrI | CACGTC | 1 cut(s) | 3050 |
| BtsI | GCAGTG | 2 cut(s) | 1083, 1288 |
| BveI | ACCTGC | 1 cut(s) | 484 |
| Cac8I | GCNNGC | 9 cut(s) | 49, 85, 268, 344, 348, 352, 445, 790, 3402 |
| CciI | TCATGA | 2 cut(s) | 2062, 2571 |
| CfoI | GCGC | 2 cut(s) | 99, 233 |
| Cfr10I | RCCGGY | 2 cut(s) | 61, 3153 |
| Cfr13I | GGNCC | 6 cut(s) | 923, 1160, 1161, 1274, 1670, 3251 |
| Cfr42I | CCGCGG | 1 cut(s) | 108 |
| ClaI | ATCGAT | 1 cut(s) | 756 |
| CseI | GACGC | 1 cut(s) | 88 |
| CspAI | ACCGGT | 1 cut(s) | 3153 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3229, 3264 |
| DraI | TTTAAA | 1 cut(s) | 1648 |
| DraIII | CACNNNGTG | 1 cut(s) | 2211 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1114 |
| EaeI | YGGCCR | 1 cut(s) | 108 |
| Eam1104I | CTCTTC | 8 cut(s) | 209, 961, 1149, 1339, 2283, 2301, 2913, 3112 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1114 |
| EarI | CTCTTC | 8 cut(s) | 209, 961, 1149, 1339, 2283, 2301, 2913, 3112 |
| Ecl136II | GAGCTC | 2 cut(s) | 971, 1741 |
| Eco130I | CCWWGG | 2 cut(s) | 2215, 3065 |
| Eco147I | AGGCCT | 2 cut(s) | 393, 2166 |
| Eco24I | GRGCYC | 4 cut(s) | 973, 1164, 1743, 2731 |
| Eco32I | GATATC | 1 cut(s) | 879 |
| Eco47I | GGWCC | 4 cut(s) | 923, 1274, 1670, 3251 |
| Eco53kI | GAGCTC | 2 cut(s) | 971, 1741 |
| Eco57I | CTGAAG | 6 cut(s) | 416, 621, 876, 1140, 1288, 1874 |
| Eco88I | CYCGRG | 1 cut(s) | 503 |
| Eco91I | GGTNACC | 1 cut(s) | 400 |
| EcoICRI | GAGCTC | 2 cut(s) | 971, 1741 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2111, 2288 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1160, 1670 |
| EcoO65I | GGTNACC | 1 cut(s) | 400 |
| EcoRI | GAATTC | 2 cut(s) | 2881, 3262 |
| EcoRII | CCWGG | 3 cut(s) | 33, 490, 2283 |
| EcoRV | GATATC | 1 cut(s) | 879 |
| EcoT14I | CCWWGG | 2 cut(s) | 2215, 3065 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 4 cut(s) | 973, 1164, 1743, 2731 |
| ErhI | CCWWGG | 2 cut(s) | 2215, 3065 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1727, 1759, 2280, 2312 |
| FaqI | GGGAC | 1 cut(s) | 1908 |
| FauI | CCCGC | 2 cut(s) | 266, 275 |
| FbaI | TGATCA | 2 cut(s) | 1000, 1342 |
| FblI | GTMKAC | 2 cut(s) | 1107, 3199 |
| FriOI | GRGCYC | 4 cut(s) | 973, 1164, 1743, 2731 |
| GlaI | GCGC | 2 cut(s) | 98, 232 |
| GsaI | CCCAGC | 2 cut(s) | 1099, 2121 |
| GsuI | CTGGAG | 2 cut(s) | 767, 2859 |
| HaeIII | GGCC | 9 cut(s) | 47, 110, 278, 393, 769, 1162, 1806, 2166, 2375 |
| HapII | CCGG | 4 cut(s) | 62, 283, 1011, 3154 |
| HgaI | GACGC | 1 cut(s) | 88 |
| HhaI | GCGC | 2 cut(s) | 99, 233 |
| Hin1I | GRCGYC | 1 cut(s) | 195 |
| Hin6I | GCGC | 2 cut(s) | 97, 231 |
| HinP1I | GCGC | 2 cut(s) | 97, 231 |
| HincII | GTYRAC | 4 cut(s) | 453, 2033, 2388, 3200 |
| HindII | GTYRAC | 4 cut(s) | 453, 2033, 2388, 3200 |
| HindIII | AAGCTT | 2 cut(s) | 1766, 2540 |
| HpaII | CCGG | 4 cut(s) | 62, 283, 1011, 3154 |
| HphI | GGTGA | 6 cut(s) | 76, 412, 1207, 2342, 3050, 3105 |
| Hpy166II | GTNNAC | 9 cut(s) | 313, 453, 901, 1108, 1274, 2033, 2388, 2560, 3200 |
| Hpy8I | GTNNAC | 9 cut(s) | 313, 453, 901, 1108, 1274, 2033, 2388, 2560, 3200 |
| Hpy99I | CGWCG | 4 cut(s) | 83, 104, 197, 200 |
| HpyCH4IV | ACGT | 2 cut(s) | 195, 3049 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 164, 237, 267, 1511, 2211, 2690, 2786, 3136 |
| HpySE526I | ACGT | 2 cut(s) | 195, 3049 |
| Hsp92I | GRCGYC | 1 cut(s) | 195 |
| HspAI | GCGC | 2 cut(s) | 97, 231 |
| Ksp22I | TGATCA | 2 cut(s) | 1000, 1342 |
| KspI | CCGCGG | 1 cut(s) | 108 |
| LguI | GCTCTTC | 3 cut(s) | 961, 1149, 2301 |
| LmnI | GCTCC | 7 cut(s) | 30, 211, 748, 1048, 1535, 1738, 2407 |
| Lsp1109I | GCAGC | 8 cut(s) | 45, 145, 257, 714, 1814, 2967, 3324, 3327 |
| MaeII | ACGT | 2 cut(s) | 195, 3049 |
| MaeIII | GTNAC | 8 cut(s) | 178, 188, 326, 400, 1600, 1820, 2653, 2933 |
| MbiI | CCGCTC | 3 cut(s) | 2230, 2961, 3139 |
| MfeI | CAATTG | 1 cut(s) | 1774 |
| MflI | RGATCY | 4 cut(s) | 16, 632, 1052, 2248 |
| MhlI | GDGCHC | 6 cut(s) | 268, 973, 1164, 1743, 2731, 2854 |
| MlyI | GAGTC | 7 cut(s) | 944, 995, 1103, 1124, 1890, 2918, 3332 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2005, 3076 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2565, 2844 |
| MspA1I | CMGCKG | 4 cut(s) | 107, 261, 270, 1827 |
| MspI | CCGG | 4 cut(s) | 62, 283, 1011, 3154 |
| MspR9I | CCNGG | 3 cut(s) | 35, 492, 2285 |
| MunI | CAATTG | 1 cut(s) | 1774 |
| Mva1269I | GAATGC | 2 cut(s) | 1390, 2581 |
| MvaI | CCWGG | 3 cut(s) | 35, 492, 2285 |
| MvnI | CGCG | 3 cut(s) | 99, 107, 2134 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 164, 237, 267, 1511, 2211, 2690, 2786, 3136 |
| NheI | GCTAGC | 2 cut(s) | 443, 788 |
| NmeAIII | GCCGAG | 1 cut(s) | 193 |
| NmuCI | GTSAC | 4 cut(s) | 178, 326, 400, 2933 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 5 cut(s) | 8, 727, 1295, 1730, 2701 |
| NspV | TTCGAA | 1 cut(s) | 3125 |
| PagI | TCATGA | 2 cut(s) | 2062, 2571 |
| PceI | AGGCCT | 2 cut(s) | 393, 2166 |
| PciSI | GCTCTTC | 3 cut(s) | 961, 1149, 2301 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 75 |
| PctI | GAATGC | 2 cut(s) | 1390, 2581 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2005, 3076 |
| PflFI | GACNNNGTC | 1 cut(s) | 324 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1855 |
| PinAI | ACCGGT | 1 cut(s) | 3153 |
| Ple19I | CGATCG | 1 cut(s) | 2192 |
| PleI | GAGTC | 7 cut(s) | 943, 994, 1103, 1123, 1890, 2918, 3332 |
| PpsI | GAGTC | 7 cut(s) | 943, 994, 1103, 1123, 1890, 2918, 3332 |
| PpuMI | RGGWCCY | 1 cut(s) | 1670 |
| PshBI | ATTAAT | 1 cut(s) | 2738 |
| PsiI | TTATAA | 1 cut(s) | 1811 |
| Psp124BI | GAGCTC | 2 cut(s) | 973, 1743 |
| Psp5II | RGGWCCY | 1 cut(s) | 1670 |
| Psp6I | CCWGG | 3 cut(s) | 33, 490, 2283 |
| PspEI | GGTNACC | 1 cut(s) | 400 |
| PspFI | CCCAGC | 2 cut(s) | 1095, 2117 |
| PspGI | CCWGG | 3 cut(s) | 33, 490, 2283 |
| PspOMI | GGGCCC | 1 cut(s) | 1160 |
| PspPI | GGNCC | 6 cut(s) | 923, 1160, 1161, 1274, 1670, 3251 |
| PspPPI | RGGWCCY | 1 cut(s) | 1670 |
| PstI | CTGCAG | 3 cut(s) | 481, 732, 1451 |
| PsuI | RGATCY | 4 cut(s) | 16, 632, 1052, 2248 |
| PsyI | GACNNNGTC | 1 cut(s) | 324 |
| PvuI | CGATCG | 1 cut(s) | 2192 |
| PvuII | CAGCTG | 1 cut(s) | 1827 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2565, 2844 |
| SacI | GAGCTC | 2 cut(s) | 973, 1743 |
| SacII | CCGCGG | 1 cut(s) | 108 |
| SalI | GTCGAC | 1 cut(s) | 3198 |
| SapI | GCTCTTC | 3 cut(s) | 961, 1149, 2301 |
| Sau96I | GGNCC | 6 cut(s) | 923, 1160, 1161, 1274, 1670, 3251 |
| ScaI | AGTACT | 1 cut(s) | 2983 |
| SchI | GAGTC | 7 cut(s) | 944, 995, 1103, 1124, 1890, 2918, 3332 |
| ScrFI | CCNGG | 3 cut(s) | 35, 492, 2285 |
| SduI | GDGCHC | 6 cut(s) | 268, 973, 1164, 1743, 2731, 2854 |
| SfcI | CTRYAG | 3 cut(s) | 477, 728, 1447 |
| Sfr303I | CCGCGG | 1 cut(s) | 108 |
| SfuI | TTCGAA | 1 cut(s) | 3125 |
| SgrBI | CCGCGG | 1 cut(s) | 108 |
| SinI | GGWCC | 4 cut(s) | 923, 1274, 1670, 3251 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2565, 2844 |
| SmlI | CTYRAG | 1 cut(s) | 3118 |
| SmoI | CTYRAG | 1 cut(s) | 3118 |
| SpeI | ACTAGT | 1 cut(s) | 1202 |
| SseBI | AGGCCT | 2 cut(s) | 393, 2166 |
| SsiI | CCGC | 9 cut(s) | 105, 107, 259, 268, 2134, 2230, 2580, 2959, 3137 |
| SstI | GAGCTC | 2 cut(s) | 973, 1743 |
| StuI | AGGCCT | 2 cut(s) | 393, 2166 |
| StyD4I | CCNGG | 3 cut(s) | 33, 490, 2283 |
| StyI | CCWWGG | 2 cut(s) | 2215, 3065 |
| TaiI | ACGT | 2 cut(s) | 198, 3052 |
| TaqI | TCGA | 9 cut(s) | 756, 975, 1631, 1656, 2188, 2192, 2265, 3125, 3199 |
| TatI | WGTACW | 3 cut(s) | 941, 1376, 2981 |
| TauI | GCSGC | 6 cut(s) | 107, 110, 2233, 2582, 2961, 3139 |
| TseFI | GTSAC | 4 cut(s) | 178, 326, 400, 2933 |
| TseI | GCWGC | 8 cut(s) | 58, 158, 270, 727, 1827, 2955, 3312, 3315 |
| Tsp45I | GTSAC | 4 cut(s) | 178, 326, 400, 2933 |
| TspGWI | ACGGA | 2 cut(s) | 1737, 2089 |
| Tth111I | GACNNNGTC | 1 cut(s) | 324 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1855 |
| VpaK11BI | GGWCC | 4 cut(s) | 923, 1274, 1670, 3251 |
| VspI | ATTAAT | 1 cut(s) | 2738 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2111, 2288 |
| XbaI | TCTAGA | 1 cut(s) | 1466 |
| XceI | RCATGY | 5 cut(s) | 8, 727, 1295, 1730, 2701 |
| XmiI | GTMKAC | 2 cut(s) | 1107, 3199 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2005, 3076 |
| ZraI | GACGTC | 1 cut(s) | 196 |
| ZrmI | AGTACT | 1 cut(s) | 2983 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |