Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8158526.1

Orthogroup ID

OG0007452

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 659

Gene Structure 659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8158526.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 659 bp

attcttttgagtctgagagtgatgatcatgtgtccggttcctgtgtagctagtaaaagcaagattgctccttctggatcctccttacacatttcatttgattcatccactgctctgccccagcatacagtagactctgagtcaagtggcagtatattggatgatgctcttccagattcttcagggcccaataagtctgtatttggggctgagttattggtgaagactagtggagatgtttcaaaggtcaggaactccacatccctgaactttgatgggttgaataatgatgatggtggacctagcagtgattcacatgccttcaacttcagagaaactaaatccatgccattctcctcttcttatgatcataaatctcttagcagtaaaagagtttcaagtacagatgctttgcattctagtagagtggtgcctacaagttcagaaaggttgaatcataatgttaataactgcagtagaactttgaagtctagagaagctgattgtcagtcatccactgtttctgatgcttgtcttgcatctggtggtagaggctcctcagtaccaagtgtaaaatctggaaatggtcattctgttgaggctagtgatactggttcatctcaggttacaaaatcttcaaatgataagactggctcgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008283 GO:0009628 GO:0009651 GO:0009791 GO:0009908 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048364 GO:0048366 GO:0048367 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080134 GO:0090567 GO:0099402 GO:0101005 GO:0140096 GO:1901000 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

219

Amino Acids

22.67

Weight (kDa)

5.87

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24560
fragaria_vesca	FvH4_5g35500 FvH4_5g35500 FvH4_5g35500 FvH4_5g35500
malus_domestica	MD08G1196200.v1.1 MD15G1384000.v1.1
prunus_persica	Prupe.1G530100_v2.0.a1 Prupe.1G530100_v2.0.a1
pyrus_communis	pycom08g16850 pycom15g34370
rosa_chinensis	RchiOBHm_Chr7g0236881
rosa_laevigata	RLG00000001053
rosa_multiflora	Rmu_co8158526.1_g000001 Rmu_sc0002867.1_g000006 Rmu_sc0017481.1_g000004 Rmu_sc0032933.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224730
rosa_rugosa	Rorug07G0300500 Rorug07G0300600
rosa_samantha	Rh7AG455400 Rh7BG426600 Rh7CG474200 Rh7DG443400
rosa_wichuraiana	Rw7G037810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	131
AclWI	GGATC	2 cut(s)	71, 84
AcuI	CTGAAG	2 cut(s)	164, 312
AfaI	GTAC	2 cut(s)	402, 563
AgsI	TTSAA	7 cut(s)	242, 282, 324, 398, 453, 486, 638
AhdI	GACNNNNNGTC	1 cut(s)	138
AhlI	ACTAGT	1 cut(s)	226
AloI	GAACNNNNNNTCC	2 cut(s)	244, 276
AluBI	AGCT	2 cut(s)	49, 499
AluI	AGCT	2 cut(s)	49, 499
AlwI	GGATC	2 cut(s)	71, 84
AoxI	GGCC	1 cut(s)	184
ApaI	GGGCCC	1 cut(s)	188
AspS9I	GGNCC	3 cut(s)	184, 185, 298
AsuHPI	GGTGA	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	298
BaeGI	GKGCMC	1 cut(s)	188
BamHI	GGATCC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	429
BanII	GRGCYC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	229
BccI	CCATC	2 cut(s)	268, 286
BclI	TGATCA	2 cut(s)	24, 366
BcuI	ACTAGT	1 cut(s)	226
BfaI	CTAG	6 cut(s)	50, 227, 302, 419, 491, 602
BfmI	CTRYAG	1 cut(s)	471
Bme18I	GGWCC	1 cut(s)	298
BmeRI	GACNNNNNGTC	1 cut(s)	138
BmgT120I	GGNCC	3 cut(s)	184, 185, 298
BmiI	GGNNCC	5 cut(s)	39, 78, 186, 431, 555
BmsI	GCATC	4 cut(s)	153, 396, 516, 547
BpiI	GAAGAC	1 cut(s)	229
BsaWI	WCCGGW	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	615, 654
BseGI	GGATG	4 cut(s)	103, 165, 259, 511
BseMII	CTCAG	5 cut(s)	5, 128, 200, 572, 634
BseNI	ACTGG	2 cut(s)	615, 654
BseRI	GAGGAG	2 cut(s)	345, 546
BseSI	GKGCMC	1 cut(s)	188
BseYI	CCCAGC	1 cut(s)	119
BshFI	GGCC	1 cut(s)	186
BshNI	GGYRCC	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	1 cut(s)	186
Bsp120I	GGGCCC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	3 cut(s)	24, 76, 366
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	5 cut(s)	6, 129, 201, 571, 633
BspLI	GGNNCC	5 cut(s)	39, 78, 186, 431, 555
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	2 cut(s)	71, 84
BspQI	GCTCTTC	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	615, 654
BssMI	GATC	3 cut(s)	24, 76, 366
Bst4CI	ACNGT	2 cut(s)	129, 519
Bst6I	CTCTTC	2 cut(s)	173, 363
BstDEI	CTNAG	6 cut(s)	14, 137, 209, 379, 558, 620
BstF5I	GGATG	4 cut(s)	103, 165, 259, 511
BstKTI	GATC	3 cut(s)	27, 79, 369
BstMBI	GATC	3 cut(s)	24, 76, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	535
BstNSI	RCATGY	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	471
BstSLI	GKGCMC	1 cut(s)	188
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	186
BtsCI	GGATG	4 cut(s)	103, 165, 259, 511
BtsI	GCAGTG	2 cut(s)	107, 312
BtsIMutI	CAGTG	3 cut(s)	107, 312, 515
Cfr13I	GGNCC	3 cut(s)	184, 185, 298
Csp6I	GTAC	2 cut(s)	401, 562
CviAII	CATG	3 cut(s)	28, 316, 345
CviJI	RGCY	7 cut(s)	49, 186, 208, 499, 554, 601, 653
CviKI_1	RGCY	7 cut(s)	49, 186, 208, 499, 554, 601, 653
CviQI	GTAC	2 cut(s)	401, 562
DdeI	CTNAG	6 cut(s)	14, 137, 209, 379, 558, 620
DpnI	GATC	3 cut(s)	26, 78, 368
DpnII	GATC	3 cut(s)	24, 76, 366
DriI	GACNNNNNGTC	1 cut(s)	138
Eam1104I	CTCTTC	2 cut(s)	173, 363
Eam1105I	GACNNNNNGTC	1 cut(s)	138
EarI	CTCTTC	2 cut(s)	173, 363
Eco24I	GRGCYC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	2 cut(s)	164, 312
EcoO109I	RGGNCCY	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	188
FaeI	CATG	3 cut(s)	31, 319, 348
FaiI	YATR	8 cut(s)	29, 125, 154, 317, 346, 365, 371, 458
FatI	CATG	3 cut(s)	27, 315, 344
FbaI	TGATCA	2 cut(s)	24, 366
FblI	GTMKAC	1 cut(s)	131
FokI	GGATG	4 cut(s)	90, 172, 246, 498
FriOI	GRGCYC	1 cut(s)	188
FspBI	CTAG	6 cut(s)	50, 227, 302, 419, 491, 602
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	3 cut(s)	31, 319, 348
HinfI	GANTC	7 cut(s)	10, 100, 133, 139, 175, 310, 453
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	231
Hpy166II	GTNNAC	2 cut(s)	132, 298
Hpy188I	TCNGA	5 cut(s)	15, 138, 331, 444, 525
Hpy188III	TCNNGA	5 cut(s)	74, 172, 249, 491, 578
Hpy8I	GTNNAC	2 cut(s)	132, 298
HpyAV	CCTTC	2 cut(s)	80, 330
HpyCH4III	ACNGT	2 cut(s)	129, 519
HpyCH4V	TGCA	3 cut(s)	414, 473, 538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	535
HpyF3I	CTNAG	6 cut(s)	14, 137, 209, 379, 558, 620
Hsp92II	CATG	3 cut(s)	31, 319, 348
Ksp22I	TGATCA	2 cut(s)	24, 366
Kzo9I	GATC	3 cut(s)	24, 76, 366
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	2 cut(s)	72, 559
LweI	GCATC	4 cut(s)	153, 396, 516, 547
MaeI	CTAG	6 cut(s)	50, 227, 302, 419, 491, 602
MaeIII	GTNAC	1 cut(s)	624
MalI	GATC	3 cut(s)	26, 78, 368
MboI	GATC	3 cut(s)	24, 76, 366
MboII	GAAGA	5 cut(s)	160, 170, 234, 350, 626
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	188
MlyI	GAGTC	3 cut(s)	19, 127, 148
MnlI	CCTC	5 cut(s)	90, 366, 544, 567, 591
MseI	TTAA	1 cut(s)	464
MspI	CCGG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	535
NdeII	GATC	3 cut(s)	24, 76, 366
NlaIII	CATG	3 cut(s)	31, 319, 348
NlaIV	GGNNCC	5 cut(s)	39, 78, 186, 431, 555
NspI	RCATGY	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	173
PctI	GAATGC	1 cut(s)	414
PfeI	GAWTC	4 cut(s)	100, 175, 310, 453
PleI	GAGTC	3 cut(s)	18, 127, 147
PpsI	GAGTC	3 cut(s)	18, 127, 147
PspFI	CCCAGC	1 cut(s)	119
PspN4I	GGNNCC	5 cut(s)	39, 78, 186, 431, 555
PspOMI	GGGCCC	1 cut(s)	184
PspPI	GGNCC	3 cut(s)	184, 185, 298
PstI	CTGCAG	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	2 cut(s)	402, 563
RsaNI	GTAC	2 cut(s)	401, 562
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	464
Sau3AI	GATC	3 cut(s)	24, 76, 366
Sau96I	GGNCC	3 cut(s)	184, 185, 298
SchI	GAGTC	3 cut(s)	19, 127, 148
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	6 cut(s)	51, 248, 303, 451, 501, 626
SfaNI	GCATC	4 cut(s)	153, 396, 516, 547
SfcI	CTRYAG	1 cut(s)	471
SinI	GGWCC	1 cut(s)	298
SpeI	ACTAGT	1 cut(s)	226
SspMI	CTAG	6 cut(s)	50, 227, 302, 419, 491, 602
TaaI	ACNGT	2 cut(s)	129, 519
TaqI	TCGA	1 cut(s)	655
TatI	WGTACW	1 cut(s)	400
TfiI	GAWTC	4 cut(s)	100, 175, 310, 453
Tru1I	TTAA	1 cut(s)	464
Tru9I	TTAA	1 cut(s)	464
TscAI	CASTG	3 cut(s)	114, 312, 522
TspDTI	ATGAA	3 cut(s)	83, 92, 605
TspRI	CASTG	3 cut(s)	114, 312, 522
VpaK11BI	GGWCC	1 cut(s)	298
XbaI	TCTAGA	1 cut(s)	490
XceI	RCATGY	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	131
XspI	CTAG	6 cut(s)	50, 227, 302, 419, 491, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.