Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032933.1

Orthogroup ID

OG0007452

Physical Location & Seq

Genomic Coordinates Reverse (-)

592 .. 1387

Gene Structure 796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032933.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgcttctttattcaaggtgttcggcgagagccccaagattaataaggaacagaataatatcttctgatcccaaacatagagccattcctgcatggatcagtggaaagagtagcaatttgaaatcaaaatccttttccacacatccaagtggtgctcaattcccaacttctaatcccccagagaattctaccagttatccgccattgcaaaggatttcggaagaggactcatcaagtgacaattcttcccttatcagcggccgctctgatggaggttcttctagtactgatagcactaggtattctaccagcaccgatgacttctccgattatttattcggtgattcaggacgtgggtggaatagcccttggggaaaattttcagattctgacacttcttcctcatcctcatcctcacccttgagttcgaagcactcgccgctctctgattcaaaccggtacgcttcaagttccagcgaaaccactggtctttgggatggtcgacctattggggatagccgtgggttcgcagattcagatggcaaagtgagtggtcctattttgaattctgacatctctaaacagtgtagaaaggtagccagtagtagtagtagcagcagcagtagatatagggaaaccgactctgagagattaggacttgattctttaagcaatgtaaaatttagaaaatcaaattgcgaaagaacagaaggcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008283 GO:0009628 GO:0009651 GO:0009791 GO:0009908 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048364 GO:0048366 GO:0048367 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080134 GO:0090567 GO:0099402 GO:0101005 GO:0140096 GO:1901000 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

239

Amino Acids

25.77

Weight (kDa)

8.76

Isoelectric Point (pI)

57.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24560
fragaria_vesca	FvH4_5g35500 FvH4_5g35500 FvH4_5g35500 FvH4_5g35500
malus_domestica	MD08G1196200.v1.1 MD15G1384000.v1.1
prunus_persica	Prupe.1G530100_v2.0.a1 Prupe.1G530100_v2.0.a1
pyrus_communis	pycom08g16850 pycom15g34370
rosa_chinensis	RchiOBHm_Chr7g0236881
rosa_laevigata	RLG00000001053
rosa_multiflora	Rmu_co8158526.1_g000001 Rmu_sc0002867.1_g000006 Rmu_sc0017481.1_g000004 Rmu_sc0032933.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224730
rosa_rugosa	Rorug07G0300500 Rorug07G0300600
rosa_samantha	Rh7AG455400 Rh7BG426600 Rh7CG474200 Rh7DG443400
rosa_wichuraiana	Rw7G037810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	264, 442
AccI	GTMKAC	1 cut(s)	502
AciI	CCGC	4 cut(s)	200, 258, 262, 440
AclWI	GGATC	2 cut(s)	62, 104
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	4 cut(s)	184, 377, 565, 680
AfaI	GTAC	2 cut(s)	286, 461
AgeI	ACCGGT	1 cut(s)	456
AgsI	TTSAA	5 cut(s)	15, 121, 453, 468, 565
AjiI	CACGTC	1 cut(s)	353
Alw21I	GWGCWC	1 cut(s)	157
AlwI	GGATC	2 cut(s)	62, 104
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	2 cut(s)	615, 618
ApoI	RAATTY	4 cut(s)	184, 377, 565, 680
AseI	ATTAAT	1 cut(s)	41
AsiGI	ACCGGT	1 cut(s)	456
Asp700I	GAANNNNTTC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	554
AsuHPI	GGTGA	2 cut(s)	353, 408
AsuII	TTCGAA	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	554
BanII	GRGCYC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	627, 630
BccI	CCATC	3 cut(s)	263, 491, 533
BceAI	ACGGC	1 cut(s)	504
BfaI	CTAG	2 cut(s)	282, 297
BisI	GCNGC	5 cut(s)	259, 262, 440, 616, 619
BlsI	GCNGC	5 cut(s)	260, 263, 441, 617, 620
BmcAI	AGTACT	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	554
BmgBI	CACGTC	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	554
Bpu14I	TTCGAA	1 cut(s)	428
BpuEI	CTTGAG	1 cut(s)	442
BsaJI	CCNNGG	2 cut(s)	368, 520
BsaWI	WCCGGW	1 cut(s)	456
Bse118I	RCCGGY	1 cut(s)	456
Bse1I	ACTGG	3 cut(s)	192, 490, 600
Bse3DI	GCAATG	2 cut(s)	203, 679
BseDI	CCNNGG	2 cut(s)	368, 520
BseGI	GGATG	4 cut(s)	142, 404, 410, 502
BseMI	GCAATG	2 cut(s)	203, 679
BseMII	CTCAG	1 cut(s)	636
BseNI	ACTGG	3 cut(s)	192, 490, 600
BseX3I	CGGCCG	1 cut(s)	259
BseXI	GCAGC	2 cut(s)	627, 630
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	1 cut(s)	261
BshTI	ACCGGT	1 cut(s)	456
BsiEI	CGRYCG	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	457
BsnI	GGCC	1 cut(s)	261
Bsp119I	TTCGAA	1 cut(s)	428
Bsp1286I	GDGCHC	2 cut(s)	34, 157
Bsp143I	GATC	2 cut(s)	67, 96
BspACI	CCGC	4 cut(s)	200, 258, 262, 440
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	1 cut(s)	637
BspPI	GGATC	2 cut(s)	62, 104
BspT104I	TTCGAA	1 cut(s)	428
BsrBI	CCGCTC	2 cut(s)	264, 442
BsrDI	GCAATG	2 cut(s)	203, 679
BsrFI	RCCGGY	1 cut(s)	456
BsrI	ACTGG	3 cut(s)	192, 490, 600
BssAI	RCCGGY	1 cut(s)	456
BssECI	CCNNGG	2 cut(s)	368, 520
BssMI	GATC	2 cut(s)	67, 96
BssT1I	CCWWGG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	585
Bst6I	CTCTTC	1 cut(s)	216
BstBI	TTCGAA	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	645
BstDSI	CCRYGG	1 cut(s)	520
BstF5I	GGATG	4 cut(s)	142, 404, 410, 502
BstKTI	GATC	2 cut(s)	70, 99
BstMBI	GATC	2 cut(s)	67, 96
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 439
BstV1I	GCAGC	2 cut(s)	627, 630
BstZI	CGGCCG	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	261
BtgI	CCRYGG	1 cut(s)	520
BtrI	CACGTC	1 cut(s)	353
BtsCI	GGATG	4 cut(s)	142, 404, 410, 502
BtsIMutI	CAGTG	3 cut(s)	106, 483, 590
CaiI	CAGNNNCTG	1 cut(s)	389
CciNI	GCGGCCGC	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	456
Cfr13I	GGNCC	1 cut(s)	554
Csp6I	GTAC	2 cut(s)	285, 460
CspAI	ACCGGT	1 cut(s)	456
CspCI	CAANNNNNGTGG	2 cut(s)	532, 567
CviAII	CATG	1 cut(s)	93
CviJI	RGCY	7 cut(s)	32, 83, 261, 366, 519, 599, 714
CviKI_1	RGCY	7 cut(s)	32, 83, 261, 366, 519, 599, 714
CviQI	GTAC	2 cut(s)	285, 460
DdeI	CTNAG	1 cut(s)	645
DpnI	GATC	2 cut(s)	69, 98
DpnII	GATC	2 cut(s)	67, 96
EaeI	YGGCCR	1 cut(s)	259
EagI	CGGCCG	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
EciI	GGCGGA	1 cut(s)	189
EclXI	CGGCCG	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	368
Eco24I	GRGCYC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	554
Eco52I	CGGCCG	1 cut(s)	259
EcoRI	GAATTC	2 cut(s)	184, 565
EcoT14I	CCWWGG	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	1 cut(s)	96
FaiI	YATR	3 cut(s)	78, 94, 630
FatI	CATG	1 cut(s)	92
FblI	GTMKAC	1 cut(s)	502
Fnu4HI	GCNGC	5 cut(s)	259, 262, 440, 616, 619
FokI	GGATG	4 cut(s)	129, 391, 397, 509
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	5 cut(s)	259, 262, 440, 616, 619
FspBI	CTAG	2 cut(s)	282, 297
GluI	GCNGC	5 cut(s)	259, 262, 440, 616, 619
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	1 cut(s)	457
Hin1II	CATG	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	503
HindII	GTYRAC	1 cut(s)	503
HinfI	GANTC	7 cut(s)	227, 344, 386, 449, 533, 641, 662
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	2 cut(s)	353, 408
Hpy166II	GTNNAC	1 cut(s)	503
Hpy188III	TCNNGA	1 cut(s)	348
Hpy8I	GTNNAC	1 cut(s)	503
HpyAV	CCTTC	1 cut(s)	704
HpyCH4III	ACNGT	1 cut(s)	585
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	2 cut(s)	92, 208
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 439
HpyF3I	CTNAG	1 cut(s)	645
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	67, 96
LpnPI	CCDG	9 cut(s)	102, 192, 205, 322, 333, 470, 471, 487, 613
Lsp1109I	GCAGC	2 cut(s)	627, 630
MaeI	CTAG	2 cut(s)	282, 297
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	2 cut(s)	69, 98
MbiI	CCGCTC	2 cut(s)	264, 442
MboI	GATC	2 cut(s)	67, 96
MboII	GAAGA	5 cut(s)	54, 233, 237, 270, 390
MhlI	GDGCHC	2 cut(s)	34, 157
MluCI	AATT	8 cut(s)	115, 158, 184, 241, 377, 565, 680, 694
MlyI	GAGTC	2 cut(s)	221, 635
MnlI	CCTC	5 cut(s)	217, 266, 412, 418, 424
MroXI	GAANNNNTTC	1 cut(s)	379
MseI	TTAA	2 cut(s)	41, 668
MslI	CAYNNNNRTG	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	1 cut(s)	457
MwoI	GCNNNNNNNGC	2 cut(s)	89, 439
NdeII	GATC	2 cut(s)	67, 96
NlaIII	CATG	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	236
NotI	GCGGCCGC	1 cut(s)	259
NspV	TTCGAA	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	379
PfeI	GAWTC	5 cut(s)	344, 386, 449, 533, 662
PinAI	ACCGGT	1 cut(s)	456
PkrI	GCNGC	5 cut(s)	260, 263, 441, 617, 620
PleI	GAGTC	2 cut(s)	221, 635
PpsI	GAGTC	2 cut(s)	221, 635
PshBI	ATTAAT	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	554
PstNI	CAGNNNCTG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	286, 461
RsaNI	GTAC	2 cut(s)	285, 460
RseI	CAYNNNNRTG	1 cut(s)	147
SalI	GTCGAC	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	41, 668
SatI	GCNGC	5 cut(s)	259, 262, 440, 616, 619
Sau3AI	GATC	2 cut(s)	67, 96
Sau96I	GGNCC	1 cut(s)	554
ScaI	AGTACT	1 cut(s)	286
SchI	GAGTC	2 cut(s)	221, 635
SduI	GDGCHC	2 cut(s)	34, 157
SetI	ASST	6 cut(s)	20, 277, 302, 355, 508, 597
SfuI	TTCGAA	1 cut(s)	428
SinI	GGWCC	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	8 cut(s)	115, 158, 184, 241, 377, 565, 680, 694
SsiI	CCGC	4 cut(s)	200, 258, 262, 440
SspMI	CTAG	2 cut(s)	282, 297
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	1 cut(s)	585
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	2 cut(s)	428, 502
TasI	AATT	8 cut(s)	115, 158, 184, 241, 377, 565, 680, 694
TatI	WGTACW	1 cut(s)	284
TauI	GCSGC	3 cut(s)	261, 264, 442
TfiI	GAWTC	5 cut(s)	344, 386, 449, 533, 662
Tru1I	TTAA	2 cut(s)	41, 668
Tru9I	TTAA	2 cut(s)	41, 668
TscAI	CASTG	3 cut(s)	106, 490, 590
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	2 cut(s)	615, 618
Tsp45I	GTSAC	1 cut(s)	236
TspRI	CASTG	3 cut(s)	106, 490, 590
VpaK11BI	GGWCC	1 cut(s)	554
VspI	ATTAAT	1 cut(s)	41
XapI	RAATTY	4 cut(s)	184, 377, 565, 680
XmiI	GTMKAC	1 cut(s)	502
XmnI	GAANNNNTTC	1 cut(s)	379
XspI	CTAG	2 cut(s)	282, 297
ZrmI	AGTACT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.