Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007452

Physical Location & Seq

Genomic Coordinates Forward (+)

9841954 .. 9849719

Gene Structure 7766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001053

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3342 bp

ATGCATGTATCGGTGGATCTAGGGTTTCGGAGCCTGGTAGTGGTGGCCTGCATCCTGCTGCCGGTGATTGGATTCTTCGTGGCTCGCCACAAATGGCGCCTCGCCGAGGCCAGGAGGCAGGAGATCAAGAGGCTTTTGGTGTTGGCATCACAGGAAGCTGCTAGAGCCGAGTTTGAGGTCACTACTGGTTACGACGTCGTTTTTGCTCCTGAGAAGAGGGATTCATATTGCGCCGTCTGCTACTGCCCCACCACGACCCGCTGTGCCCGCTGCAAGGCCGTCCGGTACTGTTCTGGGAAATGTCAAATTGTTCACTGGCGACAAGGTCACAGGGATAATTGCCAGCCTGCACGCATAGTTGATACAAATTTTGATGGGGAAAATGATGAAGGCCAGAAGGTGACCAAGAAAAATCTTGAAACTAATGCTGACAAGTTTGAAGCTAGGCAGTCAACTGAAAAATTGCCCGAGGAACCTGCAGTTCGTATTCCTGGTTGCCCTCCCGAGGTTCAGTGTGTAAAGGATGATGATAGTGAAGATGAATATCTTGCTGATAGGAAAGATACAAATTCTCCTTCTGGATCATCAGCTACCTCTTTTTCTGGATTTTCCACTTCTACAAACAGTAGTGGATCTTCAGACGATGTTTCTGTTAGTGAAAGTGTTAGTTCATTTGAACCTGACAGAGCAGATGCGCACCAATCTGCTAATGATACCCTTGACATGCTGCAGACTTCCTTTAATCTGGAGCAAATCGATCAATCTATGCCATTATCCCCAAAGTTTGCTAGCTTGGTTGATTCTGTTGATGGATTTGCAAAACCAAGTAAGTCAAATCAGGTTAAACCTAGTTGCAATAATGGAGAGACTGAGCAGATATCAAACACTTCTTCAGGTGTGAACCATAATGGCACGAGGGATGGTCCAGCTACCGAGTCTTGTACAGCATCTTCTGATTTCTGGGGAAGAGCTCTTGATTCTTTTGAGTCTGAGAGTGATGATCATGTGTCCGGTTCCTGTGTAGCTAGTAAAAGCAAGATTGCTCCTTCTGGATCCTCCTTACACATTTCATTTGATTCATCCACTGCTCTGCCCCAGCATACAGTAGACTCTGAGTCAAGTGGCAGTATATTAGATGATGCTCTTCCAGATTCTTCAGGGCCCAATAAGTCTGTATTTGGGGCTGAGTTATTGGCGAAGACTAGTGGAGATGTTTCAAAGGTCAGGAACTCCCCATCCCTGAACTTTGATGGGTTGAATAACGATGATGGTGGACCTAGCAGTGATTCACATGCCTTCAACTTCAGAGAAACTAAATCCATGCCATTCTCCTCTTCTTATGATCATAAATCTCTTAGCAGTAAAAGAGTTTCAAGTACAGATGTTTTGCATTCTAGTAGAGTGGTGCCTACAAGTTCAGAAAGGTTGAATCATAATTTTAATAACTGCAGTAGAACTTTGAAGTCTAGAGAAGCTGATTGTCAGTCATCCACTGTTTCTGATGCTTGTCTTGCATCTGGTGGTAGAGGCTCCTCAGTACCAAGTGTAAAATCTGGAAATGGTCATTCTGTTGAGGCTAGTGATACTGTTTCATCTCAGGTTACAAAATCTTCAAATGATAAGACTGGCTCGAAGACCTCTGTATTTAAAGTTTTTGATCAGTTTAGAGGACCTAAAATTTCAAAGCACTATCCTTTGGGAGTTGGGAGTGAAATTGCAGGAAAACATGCTGAGAAGGAGCTCTTTCCGTATGAAGTATTTGTCAAACTTTACAATTGGAACAAGGTGGAATTGCAACCTTCTGGCCTTATAAATTGTGGTAACAGCTGCTATGCCAATGCAGTCCTCCAATGCTTGGCATTTACTCCGCCTCTGACTGCTTATTTGCTTCAGGGACTCCATTCTAAATCTTGTGCAAAGAAGGAATGGTGTTTCATGTGTGAGTTTGAACGTCTAATTTTGAAGGCAAAGGAAGGGAAGTCTCCACTGTCTCCTATTGGAATACTTTCCCAGTTAAGAAATATCGGAAGTCAACTTGGTAATGGGAGAGAAGAAGATGCTCATGAATTTCTAAGATATGCTATTGACACGATGCAATCCGTTTGCCTTATGGAAGCTGGGGTTAATGCTTCACGGTCTTTGAAAGAGGAAACAACTTTAATAGGCCTTACCTTCGGTGGCTACCTTCGATCGAAGATAAAATGCACAAGGTGCCAAGGCAAGTCTGAGCGGCAAGAAAGAATGATGGATCTTACTGTTGAAATCGAGGGCGACATAGGAACCCTGGAAGAGGCTCTTCGGCAATTTACTGGCACTGAGGTCTTAGATGGTGAAAATAAATACCAATGTAGCAGATGCAAATCTTATGAGAAGGCCAAAAAGAAGTTGACAATACTGGAAGCTCCCAATGTCCTTACTATTGCATTGAAGCGATTTCAGTCAGGGAAATTTGGTAAGATCAATAAGCCCGTACGGTTTCCTGAAATTCTGGACTTGGCGCCTTACATGAGTGGTACAAGTGATAAATCACCCATATACAAGCTTTATGGGGTGGTTGTTCACTTGGATGTCATGAATGCCGCATTTTCTGGTCATTATGTGTGCTATGTTAAGAATTTGCAGAACAAGTGGTTCAAGATTGATGATAGCACGGTAACTGCTGTGGAACTTGAAAATGTCTTGGCAAAAGGGGCGTACATGCTTCTTTATTCAAGGTGCTCAGCGAGAGCCCCAAGATTAATAAGGAACAGAATAATATCTTCTGATCCCAAACATAGAGCCATTCCTGCATGGATCAGTGGAAAGAGTACCAATTTGAAATCAAAATCCTTTTCCACACATCAAAGTGGTGCTCAATTCCCCACTTCTAATCCTCCAGATAATTCTACCAGTTATCCGCCATTGCAAAGGATTTCGGAAGAGGACTCATCAAGTGACAATTCTTCCCTTATCAGCGGCCGCTCTGATGGAGGACGTGGGTGGAATAGCCCTTGGGGAAATTTTTCGGATAATGACACTTCTTCGTCATCCTCTTCCTCACCCTTGAGTTTGAAGCACTCGCCGCTCTCTGATTCAAACCGGTACGCTTCAAGTTCCAGCGAAACCACTGGTCTTTGGGATGGTCGACCTATTGGGGATAGCCGCAGGTTCGCAGATTCTGATGGCAAAGTGAGTGGTTCTTTTTTGAATTCTGACATCACTAAACAGTGTAGAAAGGTAGCCAGTAGTAGTAGCAGCAGCAGCAGTAGATATAGGGAAACTGACTCTGAGAGATTAGGACTTGATTCGTTAAGCAATGTAAAACTTAGAAAATCAAATTGCGAAAGAACAGCAGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008283 GO:0009628 GO:0009651 GO:0009791 GO:0009908 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048364 GO:0048366 GO:0048367 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080134 GO:0090567 GO:0099402 GO:0101005 GO:0140096 GO:1901000 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

1114

Amino Acids

121.41

Weight (kDa)

6.9

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-MYND	PF01753	77 - 114	9e-07	MYND finger
UCH_1	PF13423	601 - 885	2e-23	Ubiquitin carboxyl-terminal hydrolase
UCH	PF00443	602 - 903	1.1e-55	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24560
fragaria_vesca	FvH4_5g35500 FvH4_5g35500 FvH4_5g35500 FvH4_5g35500
malus_domestica	MD08G1196200.v1.1 MD15G1384000.v1.1
prunus_persica	Prupe.1G530100_v2.0.a1 Prupe.1G530100_v2.0.a1
pyrus_communis	pycom08g16850 pycom15g34370
rosa_chinensis	RchiOBHm_Chr7g0236881
rosa_laevigata	RLG00000001053
rosa_multiflora	Rmu_co8158526.1_g000001 Rmu_sc0002867.1_g000006 Rmu_sc0017481.1_g000004 Rmu_sc0032933.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224730
rosa_rugosa	Rorug07G0300500 Rorug07G0300600
rosa_samantha	Rh7AG455400 Rh7BG426600 Rh7CG474200 Rh7DG443400
rosa_wichuraiana	Rw7G037810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1811
AatII	GACGTC	1 cut(s)	198
Acc16I	TGCGCA	1 cut(s)	696
Acc36I	ACCTGC	2 cut(s)	484, 3135
AccB1I	GGYRCC	4 cut(s)	96, 1405, 2211, 2497
AccB7I	CCANNNNNTGG	1 cut(s)	1855
AccBSI	CCGCTC	3 cut(s)	2230, 2961, 3064
AccI	GTMKAC	2 cut(s)	1107, 3124
AclWI	GGATC	8 cut(s)	24, 589, 640, 1047, 1060, 2256, 2759, 2801
AcoI	YGGCCR	1 cut(s)	2956
AcsI	RAATTY	9 cut(s)	367, 568, 1677, 2066, 2447, 2484, 2614, 2998, 3187
AcuI	CTGAAG	5 cut(s)	621, 876, 1140, 1288, 1874
AcyI	GRCGYC	3 cut(s)	97, 195, 2498
AdeI	CACNNNGTG	1 cut(s)	2211
AfaI	GTAC	9 cut(s)	287, 943, 1378, 1539, 2472, 2515, 2696, 2809, 3083
AfiI	CCNNNNNNNGG	9 cut(s)	40, 61, 68, 106, 111, 274, 505, 1855, 2290
AgeI	ACCGGT	1 cut(s)	3078
AhdI	GACNNNNNGTC	1 cut(s)	1114
AhlI	ACTAGT	1 cut(s)	1202
AjiI	CACGTC	1 cut(s)	2975
AjnI	CCWGG	4 cut(s)	33, 110, 490, 2283
AloI	GAACNNNNNNTCC	2 cut(s)	1220, 1252
Alw21I	GWGCWC	4 cut(s)	973, 1743, 2720, 2854
Alw26I	GTCTC	3 cut(s)	860, 1986, 1995
AlwI	GGATC	8 cut(s)	24, 589, 640, 1047, 1060, 2256, 2759, 2801
AlwNI	CAGNNNCTG	1 cut(s)	3158
Ama87I	CYCGRG	2 cut(s)	467, 503
AoxI	GGCC	9 cut(s)	45, 108, 276, 391, 1160, 1804, 2164, 2373, 2956
ApaI	GGGCCC	1 cut(s)	1164
ApeKI	GCWGC	8 cut(s)	58, 158, 270, 727, 1827, 3234, 3237, 3240
ApoI	RAATTY	9 cut(s)	367, 568, 1677, 2066, 2447, 2484, 2614, 2998, 3187
ArsI	GACNNNNNNTTYG	4 cut(s)	185, 217, 1867, 1899
AseI	ATTAAT	1 cut(s)	2738
AsiGI	ACCGGT	1 cut(s)	3078
Asp700I	GAANNNNTTC	2 cut(s)	2005, 3001
AspLEI	GCGC	4 cut(s)	99, 233, 697, 2500
AspS9I	GGNCC	5 cut(s)	923, 1160, 1161, 1274, 1670
AsuHPI	GGTGA	5 cut(s)	76, 412, 2342, 2520, 3030
AsuNHI	GCTAGC	1 cut(s)	788
AvaI	CYCGRG	2 cut(s)	467, 503
AvaII	GGWCC	3 cut(s)	923, 1274, 1670
BaeGI	GKGCMC	2 cut(s)	268, 1164
BamHI	GGATCC	1 cut(s)	1052
BanI	GGYRCC	4 cut(s)	96, 1405, 2211, 2497
BanII	GRGCYC	4 cut(s)	973, 1164, 1743, 2731
BarI	GAAGNNNNNNTAC	4 cut(s)	619, 651, 934, 966
BauI	CACGAG	1 cut(s)	913
BbsI	GAAGAC	2 cut(s)	1205, 1640
Bbv12I	GWGCWC	4 cut(s)	973, 1743, 2720, 2854
BbvI	GCAGC	8 cut(s)	45, 145, 257, 714, 1814, 3246, 3249, 3252
BceAI	ACGGC	2 cut(s)	218, 263
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BciT130I	CCWGG	4 cut(s)	35, 112, 492, 2285
BclI	TGATCA	3 cut(s)	1000, 1342, 1657
BcoDI	GTCTC	3 cut(s)	860, 1986, 1995
BcuI	ACTAGT	1 cut(s)	1202
BfmI	CTRYAG	3 cut(s)	477, 728, 1447
BfoI	RGCGCY	2 cut(s)	100, 2501
BfuAI	ACCTGC	2 cut(s)	484, 3135
BlpI	GCTNAGC	1 cut(s)	2719
Bme1390I	CCNGG	4 cut(s)	35, 112, 492, 2285
Bme18I	GGWCC	3 cut(s)	923, 1274, 1670
BmeRI	GACNNNNNGTC	1 cut(s)	1114
BmeT110I	CYCGRG	2 cut(s)	467, 503
BmgBI	CACGTC	1 cut(s)	2975
BmgT120I	GGNCC	5 cut(s)	923, 1160, 1161, 1274, 1670
BmrFI	CCNGG	4 cut(s)	35, 112, 492, 2285
BmrI	ACTGGG	1 cut(s)	2005
BmtI	GCTAGC	1 cut(s)	792
BmuI	ACTGGG	1 cut(s)	2005
BpiI	GAAGAC	2 cut(s)	1205, 1640
BpmI	CTGGAG	2 cut(s)	767, 2859
Bpu1102I	GCTNAGC	1 cut(s)	2719
BpuEI	CTTGAG	1 cut(s)	3064
Bsa29I	ATCGAT	1 cut(s)	756
BsaBI	GATNNNNATC	2 cut(s)	543, 2359
BsaHI	GRCGYC	3 cut(s)	97, 195, 2498
BsaJI	CCNNGG	6 cut(s)	105, 468, 504, 2215, 2283, 2990
BsaWI	WCCGGW	3 cut(s)	282, 1010, 3078
BsaXI	ACNNNNNCTCC	2 cut(s)	556, 586
Bsc4I	CCNNNNNNNGG	9 cut(s)	40, 61, 68, 106, 111, 274, 505, 1855, 2290
Bse118I	RCCGGY	2 cut(s)	61, 3078
Bse1I	ACTGG	9 cut(s)	190, 320, 1630, 2011, 2314, 2400, 2889, 3112, 3222
Bse3DI	GCAATG	2 cut(s)	2900, 3301
Bse8I	GATNNNNATC	2 cut(s)	543, 2359
BseBI	CCWGG	4 cut(s)	35, 112, 492, 2285
BseCI	ATCGAT	1 cut(s)	756
BseDI	CCNNGG	6 cut(s)	105, 468, 504, 2215, 2283, 2990
BseGI	GGATG	9 cut(s)	51, 529, 925, 1079, 1235, 1487, 2572, 3026, 3124
BseJI	GATNNNNATC	2 cut(s)	543, 2359
BseLI	CCNNNNNNNGG	9 cut(s)	40, 61, 68, 106, 111, 274, 505, 1855, 2290
BseMI	GCAATG	2 cut(s)	2900, 3301
BseNI	ACTGG	9 cut(s)	190, 320, 1630, 2011, 2314, 2400, 2889, 3112, 3222
BseRI	GAGGAG	2 cut(s)	1321, 1522
BseSI	GKGCMC	2 cut(s)	268, 1164
BseX3I	CGGCCG	1 cut(s)	2956
BseXI	GCAGC	8 cut(s)	45, 145, 257, 714, 1814, 3246, 3249, 3252
BseYI	CCCAGC	2 cut(s)	1095, 2117
BsgI	GTGCAG	1 cut(s)	333
Bsh1285I	CGRYCG	2 cut(s)	2192, 2959
BshFI	GGCC	9 cut(s)	47, 110, 278, 393, 1162, 1806, 2166, 2375, 2958
BshNI	GGYRCC	4 cut(s)	96, 1405, 2211, 2497
BshTI	ACCGGT	1 cut(s)	3078
BshVI	ATCGAT	1 cut(s)	756
BsiEI	CGRYCG	2 cut(s)	2192, 2959
BsiHKAI	GWGCWC	4 cut(s)	973, 1743, 2720, 2854
BsiHKCI	CYCGRG	2 cut(s)	467, 503
BsiSI	CCGG	4 cut(s)	62, 283, 1011, 3079
BsiWI	CGTACG	1 cut(s)	2470
BslFI	GGGAC	1 cut(s)	1908
BslI	CCNNNNNNNGG	9 cut(s)	40, 61, 68, 106, 111, 274, 505, 1855, 2290
BsmAI	GTCTC	3 cut(s)	860, 1986, 1995
BsmFI	GGGAC	1 cut(s)	1908
BsmI	GAATGC	2 cut(s)	1390, 2581
BsnI	GGCC	9 cut(s)	47, 110, 278, 393, 1162, 1806, 2166, 2375, 2958
BsoBI	CYCGRG	2 cut(s)	467, 503
Bsp120I	GGGCCC	1 cut(s)	1160
Bsp1286I	GDGCHC	7 cut(s)	268, 973, 1164, 1743, 2720, 2731, 2854
Bsp1407I	TGTACA	1 cut(s)	941
Bsp1720I	GCTNAGC	1 cut(s)	2719
BspANI	GGCC	9 cut(s)	47, 110, 278, 393, 1162, 1806, 2166, 2375, 2958
BspDI	ATCGAT	1 cut(s)	756
BspHI	TCATGA	2 cut(s)	2062, 2571
BspMAI	CTGCAG	3 cut(s)	481, 732, 1451
BspMI	ACCTGC	2 cut(s)	484, 3135
BspOI	GCTAGC	1 cut(s)	792
BspPI	GGATC	8 cut(s)	24, 589, 640, 1047, 1060, 2256, 2759, 2801
BspQI	GCTCTTC	3 cut(s)	961, 1149, 2301
BspT107I	GGYRCC	4 cut(s)	96, 1405, 2211, 2497
BsrBI	CCGCTC	3 cut(s)	2230, 2961, 3064
BsrDI	GCAATG	2 cut(s)	2900, 3301
BsrFI	RCCGGY	2 cut(s)	61, 3078
BsrGI	TGTACA	1 cut(s)	941
BsrI	ACTGG	9 cut(s)	190, 320, 1630, 2011, 2314, 2400, 2889, 3112, 3222
BssAI	RCCGGY	2 cut(s)	61, 3078
BssECI	CCNNGG	6 cut(s)	105, 468, 504, 2215, 2283, 2990
BssNI	GRCGYC	3 cut(s)	97, 195, 2498
BssSI	CACGAG	1 cut(s)	913
BssT1I	CCWWGG	2 cut(s)	2215, 2990
Bst2BI	CACGAG	1 cut(s)	913
Bst2UI	CCWGG	4 cut(s)	35, 112, 492, 2285
Bst6I	CTCTTC	8 cut(s)	209, 961, 1149, 1339, 2283, 2301, 2913, 3037
BstACI	GRCGYC	3 cut(s)	97, 195, 2498
BstAPI	GCANNNNNTGC	1 cut(s)	2211
BstAUI	TGTACA	1 cut(s)	941
BstC8I	GCNNGC	7 cut(s)	49, 85, 268, 344, 348, 352, 790
BstEII	GGTNACC	1 cut(s)	400
BstENI	CCTNNNNNAGG	2 cut(s)	104, 2288
BstF5I	GGATG	9 cut(s)	51, 529, 925, 1079, 1235, 1487, 2572, 3026, 3124
BstH2I	RGCGCY	2 cut(s)	100, 2501
BstHHI	GCGC	4 cut(s)	99, 233, 697, 2500
BstMAI	GTCTC	3 cut(s)	860, 1986, 1995
BstMCI	CGRYCG	2 cut(s)	2192, 2959
BstMWI	GCNNNNNNNGC	9 cut(s)	164, 237, 267, 1511, 2211, 2690, 2786, 3061, 3240
BstNI	CCWGG	4 cut(s)	35, 112, 492, 2285
BstNSI	RCATGY	5 cut(s)	8, 727, 1295, 1730, 2701
BstPI	GGTNACC	1 cut(s)	400
BstSCI	CCNGG	4 cut(s)	33, 110, 490, 2283
BstSFI	CTRYAG	3 cut(s)	477, 728, 1447
BstSLI	GKGCMC	2 cut(s)	268, 1164
BstV1I	GCAGC	8 cut(s)	45, 145, 257, 714, 1814, 3246, 3249, 3252
BstV2I	GAAGAC	2 cut(s)	1205, 1640
BstX2I	RGATCY	4 cut(s)	16, 632, 1052, 2248
BstYI	RGATCY	4 cut(s)	16, 632, 1052, 2248
BstZI	CGGCCG	1 cut(s)	2956
Bsu15I	ATCGAT	1 cut(s)	756
BsuRI	GGCC	9 cut(s)	47, 110, 278, 393, 1162, 1806, 2166, 2375, 2958
BsuTUI	ATCGAT	1 cut(s)	756
BtrI	CACGTC	1 cut(s)	2975
BtsCI	GGATG	9 cut(s)	51, 529, 925, 1079, 1235, 1487, 2572, 3026, 3124
BtsI	GCAGTG	2 cut(s)	1083, 1288
BveI	ACCTGC	2 cut(s)	484, 3135
Cac8I	GCNNGC	7 cut(s)	49, 85, 268, 344, 348, 352, 790
CaiI	CAGNNNCTG	1 cut(s)	3158
CciI	TCATGA	2 cut(s)	2062, 2571
CciNI	GCGGCCGC	1 cut(s)	2956
CfoI	GCGC	4 cut(s)	99, 233, 697, 2500
Cfr10I	RCCGGY	2 cut(s)	61, 3078
Cfr13I	GGNCC	5 cut(s)	923, 1160, 1161, 1274, 1670
ClaI	ATCGAT	1 cut(s)	756
Csp6I	GTAC	9 cut(s)	286, 942, 1377, 1538, 2471, 2514, 2695, 2808, 3082
CspAI	ACCGGT	1 cut(s)	3078
CspCI	CAANNNNNGTGG	2 cut(s)	3154, 3189
CviQI	GTAC	9 cut(s)	286, 942, 1377, 1538, 2471, 2514, 2695, 2808, 3082
DinI	GGCGCC	2 cut(s)	98, 2499
DraI	TTTAAA	1 cut(s)	1648
DraIII	CACNNNGTG	1 cut(s)	2211
DriI	GACNNNNNGTC	1 cut(s)	1114
EaeI	YGGCCR	1 cut(s)	2956
EagI	CGGCCG	1 cut(s)	2956
Eam1104I	CTCTTC	8 cut(s)	209, 961, 1149, 1339, 2283, 2301, 2913, 3037
Eam1105I	GACNNNNNGTC	1 cut(s)	1114
EarI	CTCTTC	8 cut(s)	209, 961, 1149, 1339, 2283, 2301, 2913, 3037
EciI	GGCGGA	2 cut(s)	1857, 2886
Ecl136II	GAGCTC	2 cut(s)	971, 1741
EclXI	CGGCCG	1 cut(s)	2956
Eco130I	CCWWGG	2 cut(s)	2215, 2990
Eco147I	AGGCCT	1 cut(s)	2166
Eco24I	GRGCYC	4 cut(s)	973, 1164, 1743, 2731
Eco32I	GATATC	1 cut(s)	879
Eco47I	GGWCC	3 cut(s)	923, 1274, 1670
Eco52I	CGGCCG	1 cut(s)	2956
Eco53kI	GAGCTC	2 cut(s)	971, 1741
Eco57I	CTGAAG	5 cut(s)	621, 876, 1140, 1288, 1874
Eco88I	CYCGRG	2 cut(s)	467, 503
Eco91I	GGTNACC	1 cut(s)	400
EcoICRI	GAGCTC	2 cut(s)	971, 1741
EcoNI	CCTNNNNNAGG	2 cut(s)	104, 2288
EcoO109I	RGGNCCY	2 cut(s)	1160, 1670
EcoO65I	GGTNACC	1 cut(s)	400
EcoRI	GAATTC	1 cut(s)	3187
EcoRII	CCWGG	4 cut(s)	33, 110, 490, 2283
EcoRV	GATATC	1 cut(s)	879
EcoT14I	CCWWGG	2 cut(s)	2215, 2990
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	4 cut(s)	973, 1164, 1743, 2731
EgeI	GGCGCC	2 cut(s)	98, 2499
EheI	GGCGCC	2 cut(s)	98, 2499
ErhI	CCWWGG	2 cut(s)	2215, 2990
FalI	AAGNNNNNCTT	4 cut(s)	1727, 1759, 2280, 2312
FaqI	GGGAC	1 cut(s)	1908
FauI	CCCGC	2 cut(s)	266, 275
FbaI	TGATCA	3 cut(s)	1000, 1342, 1657
FblI	GTMKAC	2 cut(s)	1107, 3124
FokI	GGATG	9 cut(s)	38, 536, 932, 1066, 1222, 1474, 2579, 3013, 3131
FriOI	GRGCYC	4 cut(s)	973, 1164, 1743, 2731
FspAI	RTGCGCAY	1 cut(s)	696
FspI	TGCGCA	1 cut(s)	696
GlaI	GCGC	4 cut(s)	98, 232, 696, 2499
GsaI	CCCAGC	2 cut(s)	1099, 2121
GsuI	CTGGAG	2 cut(s)	767, 2859
HaeII	RGCGCY	2 cut(s)	100, 2501
HaeIII	GGCC	9 cut(s)	47, 110, 278, 393, 1162, 1806, 2166, 2375, 2958
HapII	CCGG	4 cut(s)	62, 283, 1011, 3079
HhaI	GCGC	4 cut(s)	99, 233, 697, 2500
Hin1I	GRCGYC	3 cut(s)	97, 195, 2498
Hin6I	GCGC	4 cut(s)	97, 231, 695, 2498
HinP1I	GCGC	4 cut(s)	97, 231, 695, 2498
HincII	GTYRAC	4 cut(s)	453, 2033, 2388, 3125
HindII	GTYRAC	4 cut(s)	453, 2033, 2388, 3125
HindIII	AAGCTT	1 cut(s)	2540
HpaII	CCGG	4 cut(s)	62, 283, 1011, 3079
HphI	GGTGA	5 cut(s)	76, 412, 2342, 2520, 3030
Hpy166II	GTNNAC	9 cut(s)	313, 453, 901, 1108, 1274, 2033, 2388, 2560, 3125
Hpy8I	GTNNAC	9 cut(s)	313, 453, 901, 1108, 1274, 2033, 2388, 2560, 3125
Hpy99I	CGWCG	2 cut(s)	197, 200
HpyCH4IV	ACGT	3 cut(s)	195, 1951, 2974
HpyF10VI	GCNNNNNNNGC	9 cut(s)	164, 237, 267, 1511, 2211, 2690, 2786, 3061, 3240
HpySE526I	ACGT	3 cut(s)	195, 1951, 2974
Hsp92I	GRCGYC	3 cut(s)	97, 195, 2498
HspAI	GCGC	4 cut(s)	97, 231, 695, 2498
KasI	GGCGCC	2 cut(s)	96, 2497
Ksp22I	TGATCA	3 cut(s)	1000, 1342, 1657
LguI	GCTCTTC	3 cut(s)	961, 1149, 2301
LmnI	GCTCC	7 cut(s)	30, 211, 748, 1048, 1535, 1738, 2407
Lsp1109I	GCAGC	8 cut(s)	45, 145, 257, 714, 1814, 3246, 3249, 3252
MaeII	ACGT	3 cut(s)	195, 1951, 2974
MaeIII	GTNAC	8 cut(s)	178, 188, 326, 400, 1600, 1820, 2653, 2933
MbiI	CCGCTC	3 cut(s)	2230, 2961, 3064
MfeI	CAATTG	1 cut(s)	1774
MflI	RGATCY	4 cut(s)	16, 632, 1052, 2248
MhlI	GDGCHC	7 cut(s)	268, 973, 1164, 1743, 2720, 2731, 2854
Mly113I	GGCGCC	2 cut(s)	97, 2498
MlyI	GAGTC	7 cut(s)	944, 995, 1103, 1124, 1890, 2918, 3257
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	2005, 3001
MslI	CAYNNNNRTG	2 cut(s)	2565, 2844
MspA1I	CMGCKG	4 cut(s)	261, 270, 1827, 2955
MspI	CCGG	4 cut(s)	62, 283, 1011, 3079
MspR9I	CCNGG	4 cut(s)	35, 112, 492, 2285
MunI	CAATTG	1 cut(s)	1774
Mva1269I	GAATGC	2 cut(s)	1390, 2581
MvaI	CCWGG	4 cut(s)	35, 112, 492, 2285
MwoI	GCNNNNNNNGC	9 cut(s)	164, 237, 267, 1511, 2211, 2690, 2786, 3061, 3240
NarI	GGCGCC	2 cut(s)	97, 2498
NheI	GCTAGC	1 cut(s)	788
NmeAIII	GCCGAG	2 cut(s)	130, 193
NmuCI	GTSAC	4 cut(s)	178, 326, 400, 2933
NotI	GCGGCCGC	1 cut(s)	2956
NsbI	TGCGCA	1 cut(s)	696
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	5 cut(s)	8, 727, 1295, 1730, 2701
PagI	TCATGA	2 cut(s)	2062, 2571
PceI	AGGCCT	1 cut(s)	2166
PciSI	GCTCTTC	3 cut(s)	961, 1149, 2301
PctI	GAATGC	2 cut(s)	1390, 2581
PdmI	GAANNNNTTC	2 cut(s)	2005, 3001
Pfl23II	CGTACG	1 cut(s)	2470
PflFI	GACNNNGTC	1 cut(s)	324
PflMI	CCANNNNNTGG	1 cut(s)	1855
PinAI	ACCGGT	1 cut(s)	3078
Ple19I	CGATCG	1 cut(s)	2192
PleI	GAGTC	7 cut(s)	943, 994, 1103, 1123, 1890, 2918, 3257
PluTI	GGCGCC	2 cut(s)	100, 2501
PpsI	GAGTC	7 cut(s)	943, 994, 1103, 1123, 1890, 2918, 3257
PpuMI	RGGWCCY	1 cut(s)	1670
PshBI	ATTAAT	1 cut(s)	2738
PsiI	TTATAA	1 cut(s)	1811
Psp124BI	GAGCTC	2 cut(s)	973, 1743
Psp5II	RGGWCCY	1 cut(s)	1670
Psp6I	CCWGG	4 cut(s)	33, 110, 490, 2283
PspEI	GGTNACC	1 cut(s)	400
PspFI	CCCAGC	2 cut(s)	1095, 2117
PspGI	CCWGG	4 cut(s)	33, 110, 490, 2283
PspLI	CGTACG	1 cut(s)	2470
PspOMI	GGGCCC	1 cut(s)	1160
PspPI	GGNCC	5 cut(s)	923, 1160, 1161, 1274, 1670
PspPPI	RGGWCCY	1 cut(s)	1670
PstI	CTGCAG	3 cut(s)	481, 732, 1451
PstNI	CAGNNNCTG	1 cut(s)	3158
PsuI	RGATCY	4 cut(s)	16, 632, 1052, 2248
PsyI	GACNNNGTC	1 cut(s)	324
PvuI	CGATCG	1 cut(s)	2192
PvuII	CAGCTG	1 cut(s)	1827
RsaI	GTAC	9 cut(s)	287, 943, 1378, 1539, 2472, 2515, 2696, 2809, 3083
RsaNI	GTAC	9 cut(s)	286, 942, 1377, 1538, 2471, 2514, 2695, 2808, 3082
RseI	CAYNNNNRTG	2 cut(s)	2565, 2844
SacI	GAGCTC	2 cut(s)	973, 1743
SalI	GTCGAC	1 cut(s)	3123
SapI	GCTCTTC	3 cut(s)	961, 1149, 2301
Sau96I	GGNCC	5 cut(s)	923, 1160, 1161, 1274, 1670
SchI	GAGTC	7 cut(s)	944, 995, 1103, 1124, 1890, 2918, 3257
ScrFI	CCNGG	4 cut(s)	35, 112, 492, 2285
SduI	GDGCHC	7 cut(s)	268, 973, 1164, 1743, 2720, 2731, 2854
SfcI	CTRYAG	3 cut(s)	477, 728, 1447
SfoI	GGCGCC	2 cut(s)	98, 2499
SinI	GGWCC	3 cut(s)	923, 1274, 1670
SmiMI	CAYNNNNRTG	2 cut(s)	2565, 2844
SmlI	CTYRAG	1 cut(s)	3043
SmoI	CTYRAG	1 cut(s)	3043
SpeI	ACTAGT	1 cut(s)	1202
SseBI	AGGCCT	1 cut(s)	2166
SspDI	GGCGCC	2 cut(s)	96, 2497
SstI	GAGCTC	2 cut(s)	973, 1743
StuI	AGGCCT	1 cut(s)	2166
StyD4I	CCNGG	4 cut(s)	33, 110, 490, 2283
StyI	CCWWGG	2 cut(s)	2215, 2990
TaiI	ACGT	3 cut(s)	198, 1954, 2977
TaqI	TCGA	6 cut(s)	756, 1631, 2188, 2192, 2265, 3124
TatI	WGTACW	2 cut(s)	941, 1376
TauI	GCSGC	6 cut(s)	2233, 2582, 2958, 2961, 3064, 3144
TseFI	GTSAC	4 cut(s)	178, 326, 400, 2933
TseI	GCWGC	8 cut(s)	58, 158, 270, 727, 1827, 3234, 3237, 3240
Tsp45I	GTSAC	4 cut(s)	178, 326, 400, 2933
TspGWI	ACGGA	2 cut(s)	1737, 2089
Tth111I	GACNNNGTC	1 cut(s)	324
Van91I	CCANNNNNTGG	1 cut(s)	1855
VpaK11BI	GGWCC	3 cut(s)	923, 1274, 1670
VspI	ATTAAT	1 cut(s)	2738
XagI	CCTNNNNNAGG	2 cut(s)	104, 2288
XapI	RAATTY	9 cut(s)	367, 568, 1677, 2066, 2447, 2484, 2614, 2998, 3187
XbaI	TCTAGA	1 cut(s)	1466
XceI	RCATGY	5 cut(s)	8, 727, 1295, 1730, 2701
XmiI	GTMKAC	2 cut(s)	1107, 3124
XmnI	GAANNNNTTC	2 cut(s)	2005, 3001
ZraI	GACGTC	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.