pycom08g16850

ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
16951477 .. 16954637
3161 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g16850.2

Sequence Viewer

Length: 1614 bp
ATGAGTGAGTGTCCAGTTGCTGAGTCTTGTACACCTTCCTCTGATTTCTGGGGGAACACTCTTGATTCCATAGGGTCCAAGAGTGATGCCCAAGTGTCCAATTCCAGTGTAGCCAGTAATACAAAGATATCTGATTCTGGAGATTCCTTACATTTTTCATTCAACTTGTCTGGAAGTACTGCACCTCCCCTTCATAGGCTAGGCTCCAAGTCAAGGGGCACGAGGTTAGGTGATGATCTTCTAGATTCTTCAGAGCTCAGTAAGTCTATTCATGGAGCAGATTTATCAGAAAAGATTAGTGGAGATGCTGTTAAGGTCAAGAATTCCCCATCACGGAACAGTAAAGGGTTGAAAAAAGAGGATAATGAATTTAGCAGTAATTCACATGCCTTGAAGTTCAGAGAAATTAAGTCTATGTCATCCTCCTCGCCTTCAGTTCAAAGATCTCTTGGCACTGAAAGAGTTTCAAAAAGCACAGATGCTCTGAACTCTAGTAGAGTGCTATCCACAAGTTCAGAAAGGTCAGGTCATGCTGTTAAGAACTGCAGCAGAACTTCTGATGTTTTAAAGTCTAGGGAAGCTGGAACTCCATCACCCAGTGTTTCTGATGCTCGCCTTGCATCTGCTGTTGGAGGTGCACTTCCACGTGTAAAATATGGAAAAGTGGACTGTGTTGAGGCTAGTGATACTGTTTCATCTCAAGCCACAAATCTTTCAAATGATAGGAATGGCTTGAAAACCTCTGTATTTAAGGTTTTCGATCGGTTTCGATCCAAAATACCAAAGCACTATCCTTTGGGAGTTGGGAGTGAGATTGCAGGAAAATATAGCGAGAAGCAGGAACTCTTTTCTTATGAATTATTCGTCAAGCTTTACAATTGGAACAAGGTGGAATTGCGCCCTTCTGGCCTTATAAATTGCGGTAACAGCTGTTATGCCAATGCAGTGCTACAGTGCTTGTCATTTACTCCACCTCTGACTGCTTATTTGCTTCAAGGACTCCATTCTAAAGCTTGTGTAAAGAAGGGATGGTGTTTCATGTGTGAGTTTGAAAGTTTAGTTTTGATGGCAAAGGAAGGGAACTCTCCTCTGCCTCCTATGGGAATCCTTTCCCAGTTAAGAAAAATTGGAAGTCAACTTGGTAATGGGAGAGAAGAAGATGCCCATGAATTTCTAAGGTATGCAATTGACACGATGCAATCTGTTTGCCTTACGGAAACTGGGGTTAATTCTTCGCGCTCTTTGAATGAAGAAACAACTTTAATAGGCCTTACATTTGGAGGCTACCTTCGATCAAAGATAAAATGCACAAAGTGCCAAGGCAAGTCTGAGCGGCAGGAAAGAATGATGGATCTTACTGTAGAGATCGAGGGTGATATAGGAACCCTGGAAGAGGCTCTTCGTCGATTTACGGGTACTGAGACCTTGGATGGGGAGAACAAATACCAATGTAGCAGTTGCAAATCTTATGAGAAGGCCAAAAAGAAGTTGACAATACTGGAAGCTCCAAATATCCTTACAATTGCACTAAAGCGTTTTCAGTCTGGTAAGTTTGGGAAGATCAGTAAGCCTATCCGGTTTCCTGATCGATCCTGGACTTGGCACCTTTTATGA

Protein Analysis

538

Amino Acids

58.66

Weight (kDa)

9.03

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 914
AccB1I GGYRCC 1 cut(s) 1602
AccBSI CCGCTC 1 cut(s) 1333
AccII CGCG 1 cut(s) 1237
AciI CCGC 2 cut(s) 921, 1333
AclWI GGATC 3 cut(s) 765, 1359, 1584
AcsI RAATTY 3 cut(s) 322, 368, 1169
AcuI CTGAAG 2 cut(s) 234, 417
AcvI CACGTG 1 cut(s) 647
AdeI CACNNNGTG 2 cut(s) 599, 1314
AfaI GTAC 3 cut(s) 31, 178, 1417
AfiI CCNNNNNNNGG 7 cut(s) 195, 213, 333, 1100, 1393, 1431, 1599
AflIII ACRYGT 1 cut(s) 646
AjnI CCWGG 2 cut(s) 1386, 1592
AluBI AGCT 6 cut(s) 256, 581, 871, 930, 1013, 1505
AluI AGCT 6 cut(s) 256, 581, 871, 930, 1013, 1505
Alw21I GWGCWC 2 cut(s) 258, 640
Alw26I GTCTC 1 cut(s) 1415
Alw44I GTGCAC 1 cut(s) 636
AlwI GGATC 3 cut(s) 765, 1359, 1584
AlwNI CAGNNNCTG 1 cut(s) 20
AoxI GGCC 3 cut(s) 907, 1267, 1476
ApaLI GTGCAC 1 cut(s) 636
ApeKI GCWGC 1 cut(s) 546
ApoI RAATTY 3 cut(s) 322, 368, 1169
ArsI GACNNNNNNTTYG 2 cut(s) 970, 1002
Asp700I GAANNNNTTC 1 cut(s) 1108
AspLEI GCGC 2 cut(s) 900, 1239
AspS9I GGNCC 1 cut(s) 75
AsuHPI GGTGA 3 cut(s) 242, 585, 1385
AvaII GGWCC 1 cut(s) 75
BaeGI GKGCMC 2 cut(s) 221, 640
BanI GGYRCC 1 cut(s) 1602
BanII GRGCYC 1 cut(s) 258
BauI CACGAG 1 cut(s) 220
BbrPI CACGTG 1 cut(s) 647
Bbv12I GWGCWC 2 cut(s) 258, 640
BbvI GCAGC 1 cut(s) 558
BccI CCATC 6 cut(s) 337, 598, 1023, 1060, 1342, 1424
BciT130I CCWGG 2 cut(s) 1388, 1594
BcoDI GTCTC 1 cut(s) 1415
BfaI CTAG 5 cut(s) 200, 242, 492, 573, 681
BfmI CTRYAG 3 cut(s) 544, 950, 1359
BglI GCCNNNNNGGC 1 cut(s) 906
BglII AGATCT 1 cut(s) 443
BisI GCNGC 2 cut(s) 547, 1334
BlsI GCNGC 2 cut(s) 548, 1335
BmcAI AGTACT 1 cut(s) 178
Bme1390I CCNGG 2 cut(s) 1388, 1594
Bme18I GGWCC 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 75
BmiI GGNNCC 4 cut(s) 76, 205, 1384, 1604
BmrFI CCNGG 2 cut(s) 1388, 1594
BmrI ACTGGG 3 cut(s) 591, 1108, 1230
BmsI GCATC 7 cut(s) 76, 295, 469, 598, 629, 1150, 1185
BmuI ACTGGG 3 cut(s) 591, 1108, 1230
BpmI CTGGAG 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 684
Bsa29I ATCGAT 1 cut(s) 1588
BsaAI YACGTR 1 cut(s) 647
BsaI GGTCTC 1 cut(s) 1415
BsaJI CCNNGG 3 cut(s) 1318, 1386, 1425
BsaWI WCCGGW 1 cut(s) 1575
BsaXI ACNNNNNCTCC 4 cut(s) 169, 199, 294, 324
Bsc4I CCNNNNNNNGG 7 cut(s) 195, 213, 333, 1100, 1393, 1431, 1599
Bse1I ACTGG 7 cut(s) 14, 105, 114, 597, 1114, 1225, 1503
BseBI CCWGG 2 cut(s) 1388, 1594
BseCI ATCGAT 1 cut(s) 1588
BseDI CCNNGG 3 cut(s) 1318, 1386, 1425
BseGI GGATG 3 cut(s) 419, 1034, 1435
BseLI CCNNNNNNNGG 7 cut(s) 195, 213, 333, 1100, 1393, 1431, 1599
BseMII CTCAG 4 cut(s) 12, 271, 1320, 1410
BseNI ACTGG 7 cut(s) 14, 105, 114, 597, 1114, 1225, 1503
BseRI GAGGAG 2 cut(s) 415, 1077
BseSI GKGCMC 2 cut(s) 221, 640
BseXI GCAGC 1 cut(s) 558
BsgI GTGCAG 1 cut(s) 165
Bsh1236I CGCG 1 cut(s) 1237
Bsh1285I CGRYCG 1 cut(s) 763
BshFI GGCC 3 cut(s) 909, 1269, 1478
BshNI GGYRCC 1 cut(s) 1602
BshVI ATCGAT 1 cut(s) 1588
BsiEI CGRYCG 1 cut(s) 763
BsiHKAI GWGCWC 2 cut(s) 258, 640
BsiSI CCGG 1 cut(s) 1576
BslI CCNNNNNNNGG 7 cut(s) 195, 213, 333, 1100, 1393, 1431, 1599
BsmAI GTCTC 1 cut(s) 1415
BsnI GGCC 3 cut(s) 909, 1269, 1478
Bso31I GGTCTC 1 cut(s) 1415
Bsp1286I GDGCHC 3 cut(s) 221, 258, 640
Bsp1407I TGTACA 1 cut(s) 29
BspACI CCGC 2 cut(s) 921, 1333
BspANI GGCC 3 cut(s) 909, 1269, 1478
BspCNI CTCAG 4 cut(s) 13, 270, 1321, 1411
BspDI ATCGAT 1 cut(s) 1588
BspFNI CGCG 1 cut(s) 1237
BspLI GGNNCC 4 cut(s) 76, 205, 1384, 1604
BspMAI CTGCAG 1 cut(s) 548
BspPI GGATC 3 cut(s) 765, 1359, 1584
BspQI GCTCTTC 1 cut(s) 1404
BspT107I GGYRCC 1 cut(s) 1602
BspTNI GGTCTC 1 cut(s) 1415
BsrBI CCGCTC 1 cut(s) 1333
BsrGI TGTACA 1 cut(s) 29
BsrI ACTGG 7 cut(s) 14, 105, 114, 597, 1114, 1225, 1503
BssECI CCNNGG 3 cut(s) 1318, 1386, 1425
BssSI CACGAG 1 cut(s) 220
BssT1I CCWWGG 2 cut(s) 1318, 1425
Bst2BI CACGAG 1 cut(s) 220
Bst2UI CCWGG 2 cut(s) 1388, 1594
Bst4CI ACNGT 5 cut(s) 341, 671, 691, 954, 1360
Bst6I CTCTTC 2 cut(s) 1386, 1404
BstAPI GCANNNNNTGC 1 cut(s) 1314
BstAUI TGTACA 1 cut(s) 29
BstBAI YACGTR 1 cut(s) 647
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 5 cut(s) 21, 257, 1175, 1329, 1419
BstENI CCTNNNNNAGG 1 cut(s) 1391
BstF5I GGATG 3 cut(s) 419, 1034, 1435
BstFNI CGCG 1 cut(s) 1237
BstHHI GCGC 2 cut(s) 900, 1239
BstMAI GTCTC 1 cut(s) 1415
BstMCI CGRYCG 1 cut(s) 763
BstMWI GCNNNNNNNGC 4 cut(s) 617, 906, 927, 1314
BstNI CCWGG 2 cut(s) 1388, 1594
BstNSI RCATGY 1 cut(s) 389
BstSCI CCNGG 2 cut(s) 1386, 1592
BstSFI CTRYAG 3 cut(s) 544, 950, 1359
BstSLI GKGCMC 2 cut(s) 221, 640
BstUI CGCG 1 cut(s) 1237
BstV1I GCAGC 1 cut(s) 558
BstX2I RGATCY 2 cut(s) 443, 1351
BstYI RGATCY 2 cut(s) 443, 1351
Bsu15I ATCGAT 1 cut(s) 1588
BsuRI GGCC 3 cut(s) 909, 1269, 1478
BsuTUI ATCGAT 1 cut(s) 1588
BtsCI GGATG 3 cut(s) 419, 1034, 1435
BtsI GCAGTG 1 cut(s) 951
BtsIMutI CAGTG 5 cut(s) 112, 453, 604, 951, 959
Cac8I GCNNGC 1 cut(s) 613
CaiI CAGNNNCTG 1 cut(s) 20
CfoI GCGC 2 cut(s) 900, 1239
Cfr13I GGNCC 1 cut(s) 75
ClaI ATCGAT 1 cut(s) 1588
Csp6I GTAC 3 cut(s) 30, 177, 1416
CviAII CATG 5 cut(s) 272, 386, 530, 1039, 1166
CviQI GTAC 3 cut(s) 30, 177, 1416
DdeI CTNAG 5 cut(s) 21, 257, 1175, 1329, 1419
DraI TTTAAA 1 cut(s) 567
DraIII CACNNNGTG 2 cut(s) 599, 1314
Eam1104I CTCTTC 2 cut(s) 1386, 1404
EarI CTCTTC 2 cut(s) 1386, 1404
Ecl136II GAGCTC 1 cut(s) 256
Eco130I CCWWGG 2 cut(s) 1318, 1425
Eco147I AGGCCT 1 cut(s) 1269
Eco24I GRGCYC 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 1415
Eco32I GATATC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 2 cut(s) 234, 417
Eco72I CACGTG 1 cut(s) 647
EcoICRI GAGCTC 1 cut(s) 256
EcoNI CCTNNNNNAGG 1 cut(s) 1391
EcoRI GAATTC 1 cut(s) 322
EcoRII CCWGG 2 cut(s) 1386, 1592
EcoRV GATATC 1 cut(s) 129
EcoT14I CCWWGG 2 cut(s) 1318, 1425
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 2 cut(s) 1318, 1425
FaeI CATG 5 cut(s) 275, 389, 533, 1042, 1169
FalI AAGNNNNNCTT 2 cut(s) 1383, 1415
FatI CATG 5 cut(s) 271, 385, 529, 1038, 1165
Fnu4HI GCNGC 2 cut(s) 547, 1334
FokI GGATG 3 cut(s) 406, 1041, 1442
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 2 cut(s) 547, 1334
FspBI CTAG 5 cut(s) 200, 242, 492, 573, 681
GlaI GCGC 2 cut(s) 899, 1238
GluI GCNGC 2 cut(s) 547, 1334
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 3 cut(s) 909, 1269, 1478
HapII CCGG 1 cut(s) 1576
HhaI GCGC 2 cut(s) 900, 1239
Hin1II CATG 5 cut(s) 275, 389, 533, 1042, 1169
Hin6I GCGC 2 cut(s) 898, 1237
HinP1I GCGC 2 cut(s) 898, 1237
HincII GTYRAC 2 cut(s) 1136, 1491
HindII GTYRAC 2 cut(s) 1136, 1491
HindIII AAGCTT 2 cut(s) 869, 1011
HinfI GANTC 7 cut(s) 23, 65, 134, 143, 245, 999, 1104
HpaII CCGG 1 cut(s) 1576
HphI GGTGA 3 cut(s) 242, 585, 1385
Hpy166II GTNNAC 5 cut(s) 32, 638, 667, 1136, 1491
Hpy188III TCNNGA 6 cut(s) 62, 138, 171, 242, 319, 1583
Hpy8I GTNNAC 5 cut(s) 32, 638, 667, 1136, 1491
Hpy99I CGWCG 1 cut(s) 1407
HpyAV CCTTC 8 cut(s) 45, 200, 441, 912, 1018, 1070, 1298, 1468
HpyCH4III ACNGT 5 cut(s) 341, 671, 691, 954, 1360
HpyCH4IV ACGT 1 cut(s) 646
HpyF10VI GCNNNNNNNGC 4 cut(s) 617, 906, 927, 1314
HpyF3I CTNAG 5 cut(s) 21, 257, 1175, 1329, 1419
HpySE526I ACGT 1 cut(s) 646
Hsp92II CATG 5 cut(s) 275, 389, 533, 1042, 1169
HspAI GCGC 2 cut(s) 898, 1237
LguI GCTCTTC 1 cut(s) 1404
LmnI GCTCC 3 cut(s) 209, 275, 1510
Lsp1109I GCAGC 1 cut(s) 558
LweI GCATC 7 cut(s) 76, 295, 469, 598, 629, 1150, 1185
MaeI CTAG 5 cut(s) 200, 242, 492, 573, 681
MaeII ACGT 1 cut(s) 646
MaeIII GTNAC 1 cut(s) 923
MbiI CCGCTC 1 cut(s) 1333
MboII GAAGA 9 cut(s) 230, 240, 1166, 1169, 1224, 1262, 1391, 1403, 1570
MfeI CAATTG 3 cut(s) 877, 1185, 1521
MflI RGATCY 2 cut(s) 443, 1351
MhlI GDGCHC 3 cut(s) 221, 258, 640
MlyI GAGTC 2 cut(s) 32, 993
MmeI TCCRAC 1 cut(s) 610
MroXI GAANNNNTTC 1 cut(s) 1108
MseI TTAA 8 cut(s) 312, 408, 537, 566, 750, 1118, 1227, 1262
MspA1I CMGCKG 1 cut(s) 930
MspI CCGG 1 cut(s) 1576
MspR9I CCNGG 2 cut(s) 1388, 1594
MunI CAATTG 3 cut(s) 877, 1185, 1521
MvaI CCWGG 2 cut(s) 1388, 1594
MvnI CGCG 1 cut(s) 1237
MwoI GCNNNNNNNGC 4 cut(s) 617, 906, 927, 1314
NlaIII CATG 5 cut(s) 275, 389, 533, 1042, 1169
NlaIV GGNNCC 4 cut(s) 76, 205, 1384, 1604
NspI RCATGY 1 cut(s) 389
PceI AGGCCT 1 cut(s) 1269
PciSI GCTCTTC 1 cut(s) 1404
PdmI GAANNNNTTC 1 cut(s) 1108
PfeI GAWTC 5 cut(s) 65, 134, 143, 245, 1104
PfoI TCCNGGA 1 cut(s) 1592
PkrI GCNGC 2 cut(s) 548, 1335
Ple19I CGATCG 1 cut(s) 763
PleI GAGTC 2 cut(s) 31, 993
PmaCI CACGTG 1 cut(s) 647
PmlI CACGTG 1 cut(s) 647
PpsI GAGTC 2 cut(s) 31, 993
Ppu21I YACGTR 1 cut(s) 647
PsiI TTATAA 1 cut(s) 914
Psp124BI GAGCTC 1 cut(s) 258
Psp6I CCWGG 2 cut(s) 1386, 1592
PspCI CACGTG 1 cut(s) 647
PspGI CCWGG 2 cut(s) 1386, 1592
PspN4I GGNNCC 4 cut(s) 76, 205, 1384, 1604
PspPI GGNCC 1 cut(s) 75
PstI CTGCAG 1 cut(s) 548
PstNI CAGNNNCTG 1 cut(s) 20
PsuI RGATCY 2 cut(s) 443, 1351
PvuI CGATCG 1 cut(s) 763
PvuII CAGCTG 1 cut(s) 930
RsaI GTAC 3 cut(s) 31, 178, 1417
RsaNI GTAC 3 cut(s) 30, 177, 1416
SacI GAGCTC 1 cut(s) 258
SapI GCTCTTC 1 cut(s) 1404
SaqAI TTAA 8 cut(s) 312, 408, 537, 566, 750, 1118, 1227, 1262
SatI GCNGC 2 cut(s) 547, 1334
Sau96I GGNCC 1 cut(s) 75
ScaI AGTACT 1 cut(s) 178
SchI GAGTC 2 cut(s) 32, 993
ScrFI CCNGG 2 cut(s) 1388, 1594
SduI GDGCHC 3 cut(s) 221, 258, 640
SfaNI GCATC 7 cut(s) 76, 295, 469, 598, 629, 1150, 1185
SfcI CTRYAG 3 cut(s) 544, 950, 1359
SinI GGWCC 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 699
SmoI CTYRAG 1 cut(s) 699
SseBI AGGCCT 1 cut(s) 1269
SsiI CCGC 2 cut(s) 921, 1333
SspMI CTAG 5 cut(s) 200, 242, 492, 573, 681
SstI GAGCTC 1 cut(s) 258
StuI AGGCCT 1 cut(s) 1269
StyD4I CCNGG 2 cut(s) 1386, 1592
StyI CCWWGG 2 cut(s) 1318, 1425
TaaI ACNGT 5 cut(s) 341, 671, 691, 954, 1360
TaiI ACGT 1 cut(s) 649
TaqI TCGA 6 cut(s) 759, 769, 1291, 1368, 1405, 1588
TatI WGTACW 2 cut(s) 29, 176
TauI GCSGC 1 cut(s) 1336
TfiI GAWTC 5 cut(s) 65, 134, 143, 245, 1104
Tru1I TTAA 8 cut(s) 312, 408, 537, 566, 750, 1118, 1227, 1262
Tru9I TTAA 8 cut(s) 312, 408, 537, 566, 750, 1118, 1227, 1262
TscAI CASTG 5 cut(s) 112, 460, 604, 951, 959
TseI GCWGC 1 cut(s) 546
TspDTI ATGAA 9 cut(s) 147, 182, 260, 381, 684, 870, 1027, 1182, 1263
TspGWI ACGGA 2 cut(s) 349, 1229
TspRI CASTG 5 cut(s) 112, 460, 604, 951, 959
VneI GTGCAC 1 cut(s) 636
VpaK11BI GGWCC 1 cut(s) 75
XagI CCTNNNNNAGG 1 cut(s) 1391
XapI RAATTY 3 cut(s) 322, 368, 1169
XbaI TCTAGA 1 cut(s) 241
XceI RCATGY 1 cut(s) 389
XmnI GAANNNNTTC 1 cut(s) 1108
XspI CTAG 5 cut(s) 200, 242, 492, 573, 681
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.