Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002031

Physical Location & Seq

Genomic Coordinates Forward (+)

25890567 .. 25894037

Gene Structure 3471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1199800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGATGTTAGTTATTGGCTGCTTTGTTGGACATCCTGCAGAAGTCATCTTAGCATTGACGGAAGAGATTAGACAATTAACTTCTATGGTTGCTGAATTTATGATCTTCGTTCCTTCAAATCGGGTTTTCTTGCATGTAATTTATGGTTACTTTGTTTCTCCCATGGTTAATACAGTAAACACCAGTACAGTGCAATCGTCAGCAGGCTTCTCTGATCATTCTGCAACCTTAAATATCATTGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beach DUF4704 DUF4800 Laminin_G_3 PH_BEACH WD40

Protein Analysis

83

Amino Acids

8.99

Weight (kDa)

5.08

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58230 AT1G58230 AT1G58230
fragaria_vesca	FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530
malus_domestica	MD08G1199800.v1.1 MD08G1200500.v1.1 MD08G1200600.v1.1 MD15G1387600.v1.1
prunus_persica	Prupe.1G534000_v2.0.a1 Prupe.1G534000_v2.0.a1 Prupe.1G534000_v2.0.a1 Prupe.1G534000_v2.0.a1
pyrus_communis	pycom08g17380 pycom08g17390 pycom08g17400 pycom15g34760 pycom15g34770 pycom15g34780 pycom15g34790
rosa_chinensis	RchiOBHm_Chr7g0235181
rosa_laevigata	RLG00000001175
rosa_multiflora	Rmu_co8395887.1_g000001 Rmu_sc0004657.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226200
rosa_rugosa	Rorug07G0288800 Rorug07G0288900
rosa_samantha	Rh7AG443400 Rh7BG416100 Rh7CG464500 Rh7DG432900
rosa_wichuraiana	Rw7G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	95
AfaI	GTAC	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	5
BclI	TGATCA	1 cut(s)	214
BfmI	CTRYAG	1 cut(s)	36
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	162
Bse1I	ACTGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	102, 214
Bsp19I	CCATGG	1 cut(s)	162
BspMAI	CTGCAG	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	2 cut(s)	102, 214
BssT1I	CCWWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	175, 190
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	49
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	2 cut(s)	105, 217
BstMBI	GATC	2 cut(s)	102, 214
BstNSI	RCATGY	1 cut(s)	137
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	2 cut(s)	134, 163
CviJI	RGCY	2 cut(s)	18, 207
CviKI_1	RGCY	2 cut(s)	18, 207
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	2 cut(s)	104, 216
DpnII	GATC	2 cut(s)	102, 214
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	162
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	2 cut(s)	137, 166
FaiI	YATR	5 cut(s)	86, 101, 135, 144, 164
FatI	CATG	2 cut(s)	133, 162
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	137, 166
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	214
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	2 cut(s)	175, 190
HpyCH4V	TGCA	5 cut(s)	38, 133, 193, 224, 242
HpyF3I	CTNAG	1 cut(s)	49
Hsp92II	CATG	2 cut(s)	137, 166
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	102, 214
LpnPI	CCDG	3 cut(s)	48, 189, 196
Lsp1109I	GCAGC	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	2 cut(s)	104, 216
MboI	GATC	2 cut(s)	102, 214
MboII	GAAGA	2 cut(s)	74, 97
MluCI	AATT	3 cut(s)	74, 95, 138
MmeI	TCCRAC	1 cut(s)	7
MseI	TTAA	3 cut(s)	77, 168, 230
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	2 cut(s)	102, 214
NlaIII	CATG	2 cut(s)	137, 166
NspI	RCATGY	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	20
PstI	CTGCAG	1 cut(s)	40
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	77, 168, 230
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	2 cut(s)	102, 214
SetI	ASST	1 cut(s)	230
SfcI	CTRYAG	1 cut(s)	36
SgeI	CNNG	7 cut(s)	47, 134, 142, 146, 175, 195, 216
Sse9I	AATT	3 cut(s)	74, 95, 138
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	175, 190
TasI	AATT	3 cut(s)	74, 95, 138
TatI	WGTACW	1 cut(s)	185
Tru1I	TTAA	3 cut(s)	77, 168, 230
Tru9I	TTAA	3 cut(s)	77, 168, 230
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	1 cut(s)	18
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	195
XapI	RAATTY	1 cut(s)	95
XceI	RCATGY	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.