Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002031

Physical Location & Seq

Genomic Coordinates Forward (+)

17602007 .. 17607503

Gene Structure 5497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGAAGCGATTTGAGGTATTTGAAGATAGGTACCGTAGCTTCATCGATCCTGATATACCTAGTTTTTACTATGGGTCTCATTACTCAAGCATGGGGATTGTGCTTTATTACCTTCTGAGATTAGAGCCGTTTACTTCTCTCCATCGAAATTTACAGGGTGGTAAATTTGACCATGCTGACCGTCTCTTTCAAAGCATTGAGGGAACATATCAGAACTGCCTTTCTAATACTAGTGATGTGAAGGAGTTAATACCGGAGTTCTTTTACATGCCAGAGTTTCTTGTTAATTCAAATGCTTATCATTTTGGTATGAAGCAAGATGGAGAACCTATTGCAGATGTTTGTCTCCCACCCTGGGCCAAGGGCTCACCTGAAGAATTTATTAACAAGAACAGAGAAGCCCTTGAAAGCGAATATGTTAGCTCTAATCTGCACCATTGGATAGATTTGGTATTTGGTTACAAGCAGCGTGGAAAACCTGCTGTGGAGGCAGCAAATATTTTTTATTACTTAACCTATGAAGGTGCTGTTGACCTGGAGACCATGGAAGATGATTTGCAAAGGTCAGCTATTGAAGACCAAATTGCAAATTTTGGCCAGACACCAATTCAGATTTTCCGTAAAAAACACCCAAGAAGAGGGCCACCTATTCCAATTGCACATCCCTTGCGCTTCGCACCTAGTTCTATTAACTTGACATCGATTGTTTGTAGTACAAGTCAAACACGGTCGGCTGCATTATATGTTCGGACTGTGGACTCCAATGTCGTTCTTGTAAACCAGGGTCTCACCTTGTCAGTTAAGATGTGGTTGACAACCTCACTGCAATCTGGTGGAAATTTTACCTTCTCTGGCTCCCAGGATCGATCATTTGGCGTTGGTTCTGATATTCTCTCTCCTCGTAAAATTGGGAGTCCTTCAGTTGAAAATTTTGAACCTGGAGGACAATGCTTTGCAACCATGCAAACACCATCTGAGAATTTTTTGATCTCATGTGGCAATTGGGAAAATAGCTTTCAGGTTATATCGTTATATGATGGCAGAATGGTACAAAGCATCAGACAGCATAAGGATGTGGTCAGTTGTGTTGCAGTGACATCTGATGGAAGCTTCCTTGCAACTGGAAGTTATGACACTACAATTATGGTGTGGGAAGTCTTTCGAGGTAGAACCCAAGAAAAGAGACCTCGTAATACACAGACAGAACTACCACGAAAAGATTATGTCATTGTTCAAACTCCTTTTCGTATTCTCTGTGGGCACGATGATATAATTACATGCTTGTATATCAGCGTGGAGCTTGACATAGTGATCGATGGATCACATAAAGATGGAACTTGTGTTTTTCATACCCTGCAGAGTGGAAGATATGTAAGATCCTTGCGCCATCCATCTGGATGTGCATTGTCAAAGCTCGTCGCTTCTCGACATGGACTGATTGTGTTTTATGCTGATGATCGATCTGAGTTTGCATCTTTATTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beach DUF4704 DUF4800 Laminin_G_3 PH_BEACH WD40

Protein Analysis

496

Amino Acids

55.99

Weight (kDa)

5.98

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58230 AT1G58230 AT1G58230
fragaria_vesca	FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530
malus_domestica	MD08G1199800.v1.1 MD08G1200500.v1.1 MD08G1200600.v1.1 MD15G1387600.v1.1
prunus_persica	Prupe.1G534000_v2.0.a1 Prupe.1G534000_v2.0.a1 Prupe.1G534000_v2.0.a1 Prupe.1G534000_v2.0.a1
pyrus_communis	pycom08g17380 pycom08g17390 pycom08g17400 pycom15g34760 pycom15g34770 pycom15g34780 pycom15g34790
rosa_chinensis	RchiOBHm_Chr7g0235181
rosa_laevigata	RLG00000001175
rosa_multiflora	Rmu_co8395887.1_g000001 Rmu_sc0004657.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226200
rosa_rugosa	Rorug07G0288800 Rorug07G0288900
rosa_samantha	Rh7AG443400 Rh7BG416100 Rh7CG464500 Rh7DG432900
rosa_wichuraiana	Rw7G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	764
Acc36I	ACCTGC	1 cut(s)	487
Acc65I	GGTACC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	30
AclWI	GGATC	4 cut(s)	41, 870, 1327, 1371
AcoI	YGGCCR	1 cut(s)	595
AcsI	RAATTY	7 cut(s)	148, 164, 377, 589, 838, 928, 979
AcuI	CTGAAG	2 cut(s)	393, 903
AfaI	GTAC	3 cut(s)	32, 715, 1050
AfiI	CCNNNNNNNGG	2 cut(s)	355, 638
AgsI	TTSAA	9 cut(s)	23, 191, 291, 407, 575, 926, 935, 1235, 1483
AhlI	ACTAGT	1 cut(s)	230
AjnI	CCWGG	5 cut(s)	353, 534, 780, 858, 937
AluBI	AGCT	7 cut(s)	39, 423, 569, 1014, 1110, 1300, 1414
AluI	AGCT	7 cut(s)	39, 423, 569, 1014, 1110, 1300, 1414
Alw26I	GTCTC	6 cut(s)	81, 188, 350, 533, 791, 1177
AlwI	GGATC	4 cut(s)	41, 870, 1327, 1371
AoxI	GGCC	3 cut(s)	357, 595, 641
ApeKI	GCWGC	3 cut(s)	466, 491, 734
ApoI	RAATTY	7 cut(s)	148, 164, 377, 589, 838, 928, 979
Asp700I	GAANNNNTTC	1 cut(s)	1158
Asp718I	GGTACC	1 cut(s)	30
AspLEI	GCGC	2 cut(s)	672, 1386
AspS9I	GGNCC	2 cut(s)	357, 641
AsuHPI	GGTGA	2 cut(s)	360, 781
BaeGI	GKGCMC	1 cut(s)	1263
BalI	TGGCCA	1 cut(s)	597
BanI	GGYRCC	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	368
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BbsI	GAAGAC	1 cut(s)	582
BbvI	GCAGC	3 cut(s)	478, 503, 721
BccI	CCATC	9 cut(s)	150, 314, 979, 1031, 1097, 1310, 1325, 1395, 1399
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	5 cut(s)	355, 536, 782, 860, 939
BcoDI	GTCTC	6 cut(s)	81, 188, 350, 533, 791, 1177
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	3 cut(s)	60, 231, 681
BfmI	CTRYAG	1 cut(s)	1355
BfuAI	ACCTGC	1 cut(s)	487
BisI	GCNGC	3 cut(s)	467, 492, 735
BlsI	GCNGC	3 cut(s)	468, 493, 736
Bme1390I	CCNGG	5 cut(s)	355, 536, 782, 860, 939
BmgT120I	GGNCC	2 cut(s)	357, 641
BmiI	GGNNCC	2 cut(s)	32, 856
BmrFI	CCNGG	5 cut(s)	355, 536, 782, 860, 939
BmsI	GCATC	2 cut(s)	1065, 1481
BpiI	GAAGAC	1 cut(s)	582
BpmI	CTGGAG	2 cut(s)	557, 960
BpuEI	CTTGAG	1 cut(s)	70
Bsa29I	ATCGAT	5 cut(s)	45, 701, 865, 1314, 1459
BsaI	GGTCTC	4 cut(s)	81, 533, 791, 1177
BsaJI	CCNNGG	6 cut(s)	353, 354, 360, 543, 781, 858
BsaWI	WCCGGW	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	2 cut(s)	355, 638
Bse1I	ACTGG	1 cut(s)	1126
BseBI	CCWGG	5 cut(s)	355, 536, 782, 860, 939
BseCI	ATCGAT	5 cut(s)	45, 701, 865, 1314, 1459
BseDI	CCNNGG	6 cut(s)	353, 354, 360, 543, 781, 858
BseGI	GGATG	4 cut(s)	661, 1078, 1387, 1403
BseLI	CCNNNNNNNGG	2 cut(s)	355, 638
BseMII	CTCAG	3 cut(s)	107, 966, 1455
BseNI	ACTGG	1 cut(s)	1126
BseRI	GAGGAG	1 cut(s)	888
BseSI	GKGCMC	1 cut(s)	1263
BseXI	GCAGC	3 cut(s)	478, 503, 721
BsgI	GTGCAG	1 cut(s)	416
Bsh1285I	CGRYCG	1 cut(s)	731
BshFI	GGCC	3 cut(s)	359, 597, 643
BshNI	GGYRCC	1 cut(s)	30
BshVI	ATCGAT	5 cut(s)	45, 701, 865, 1314, 1459
BsiEI	CGRYCG	1 cut(s)	731
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	355, 638
BsmAI	GTCTC	6 cut(s)	81, 188, 350, 533, 791, 1177
BsmBI	CGTCTC	1 cut(s)	188
BsnI	GGCC	3 cut(s)	359, 597, 643
Bso31I	GGTCTC	4 cut(s)	81, 533, 791, 1177
Bsp1286I	GDGCHC	2 cut(s)	368, 1263
Bsp143I	GATC	9 cut(s)	46, 862, 866, 987, 1311, 1319, 1376, 1456, 1460
Bsp19I	CCATGG	1 cut(s)	543
BspANI	GGCC	3 cut(s)	359, 597, 643
BspCNI	CTCAG	3 cut(s)	108, 967, 1456
BspDI	ATCGAT	5 cut(s)	45, 701, 865, 1314, 1459
BspLI	GGNNCC	2 cut(s)	32, 856
BspMAI	CTGCAG	1 cut(s)	1359
BspMI	ACCTGC	1 cut(s)	487
BspPI	GGATC	4 cut(s)	41, 870, 1327, 1371
BspT107I	GGYRCC	1 cut(s)	30
BspTNI	GGTCTC	4 cut(s)	81, 533, 791, 1177
BsrI	ACTGG	1 cut(s)	1126
BssECI	CCNNGG	6 cut(s)	353, 354, 360, 543, 781, 858
BssMI	GATC	9 cut(s)	46, 862, 866, 987, 1311, 1319, 1376, 1456, 1460
BssT1I	CCWWGG	2 cut(s)	360, 543
Bst2UI	CCWGG	5 cut(s)	355, 536, 782, 860, 939
Bst4CI	ACNGT	4 cut(s)	35, 182, 729, 754
Bst6I	CTCTTC	1 cut(s)	631
BstDEI	CTNAG	3 cut(s)	116, 975, 1464
BstDSI	CCRYGG	1 cut(s)	543
BstF5I	GGATG	4 cut(s)	661, 1078, 1387, 1403
BstHHI	GCGC	2 cut(s)	672, 1386
BstKTI	GATC	9 cut(s)	49, 865, 869, 990, 1314, 1322, 1379, 1459, 1463
BstMAI	GTCTC	6 cut(s)	81, 188, 350, 533, 791, 1177
BstMBI	GATC	9 cut(s)	46, 862, 866, 987, 1311, 1319, 1376, 1456, 1460
BstMCI	CGRYCG	1 cut(s)	731
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNI	CCWGG	5 cut(s)	355, 536, 782, 860, 939
BstNSI	RCATGY	2 cut(s)	271, 1281
BstSCI	CCNGG	5 cut(s)	353, 534, 780, 858, 937
BstSFI	CTRYAG	1 cut(s)	1355
BstSLI	GKGCMC	1 cut(s)	1263
BstV1I	GCAGC	3 cut(s)	478, 503, 721
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	1 cut(s)	1376
BstXI	CCANNNNNNTGG	1 cut(s)	1394
BstYI	RGATCY	1 cut(s)	1376
Bsu15I	ATCGAT	5 cut(s)	45, 701, 865, 1314, 1459
BsuRI	GGCC	3 cut(s)	359, 597, 643
BsuTUI	ATCGAT	5 cut(s)	45, 701, 865, 1314, 1459
BtgI	CCRYGG	1 cut(s)	543
BtsCI	GGATG	4 cut(s)	661, 1078, 1387, 1403
BtsI	GCAGTG	2 cut(s)	821, 1098
BtsIMutI	CAGTG	2 cut(s)	821, 1098
BveI	ACCTGC	1 cut(s)	487
CfoI	GCGC	2 cut(s)	672, 1386
Cfr13I	GGNCC	2 cut(s)	357, 641
ClaI	ATCGAT	5 cut(s)	45, 701, 865, 1314, 1459
Csp6I	GTAC	3 cut(s)	31, 714, 1049
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviAII	CATG	8 cut(s)	91, 173, 268, 544, 961, 993, 1278, 1430
CviQI	GTAC	3 cut(s)	31, 714, 1049
DdeI	CTNAG	3 cut(s)	116, 975, 1464
DpnI	GATC	9 cut(s)	48, 864, 868, 989, 1313, 1321, 1378, 1458, 1462
DpnII	GATC	9 cut(s)	46, 862, 866, 987, 1311, 1319, 1376, 1456, 1460
DrdI	GACNNNNNNGTC	1 cut(s)	764
DseDI	GACNNNNNNGTC	1 cut(s)	764
EaeI	YGGCCR	1 cut(s)	595
Eam1104I	CTCTTC	1 cut(s)	631
EarI	CTCTTC	1 cut(s)	631
Eco130I	CCWWGG	2 cut(s)	360, 543
Eco24I	GRGCYC	1 cut(s)	368
Eco31I	GGTCTC	4 cut(s)	81, 533, 791, 1177
Eco57I	CTGAAG	2 cut(s)	393, 903
EcoRII	CCWGG	5 cut(s)	353, 534, 780, 858, 937
EcoT14I	CCWWGG	2 cut(s)	360, 543
EcoT38I	GRGCYC	1 cut(s)	368
ErhI	CCWWGG	2 cut(s)	360, 543
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	8 cut(s)	94, 176, 271, 547, 964, 996, 1281, 1433
FatI	CATG	8 cut(s)	90, 172, 267, 543, 960, 992, 1277, 1429
Fnu4HI	GCNGC	3 cut(s)	467, 492, 735
FokI	GGATG	4 cut(s)	648, 1085, 1374, 1410
FriOI	GRGCYC	1 cut(s)	368
Fsp4HI	GCNGC	3 cut(s)	467, 492, 735
FspBI	CTAG	3 cut(s)	60, 231, 681
GlaI	GCGC	2 cut(s)	671, 1385
GluI	GCNGC	3 cut(s)	467, 492, 735
GsuI	CTGGAG	2 cut(s)	557, 960
HaeIII	GGCC	3 cut(s)	359, 597, 643
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	2 cut(s)	672, 1386
Hin1II	CATG	8 cut(s)	94, 176, 271, 547, 964, 996, 1281, 1433
Hin6I	GCGC	2 cut(s)	670, 1384
HinP1I	GCGC	2 cut(s)	670, 1384
HincII	GTYRAC	2 cut(s)	532, 813
HindII	GTYRAC	2 cut(s)	532, 813
HindIII	AAGCTT	1 cut(s)	1108
HinfI	GANTC	2 cut(s)	758, 913
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	2 cut(s)	360, 781
Hpy166II	GTNNAC	5 cut(s)	132, 532, 757, 778, 813
Hpy188I	TCNGA	9 cut(s)	117, 213, 612, 750, 886, 976, 1061, 1102, 1465
Hpy188III	TCNNGA	3 cut(s)	50, 1395, 1425
Hpy8I	GTNNAC	5 cut(s)	132, 532, 757, 778, 813
Hpy99I	CGWCG	1 cut(s)	1421
HpyAV	CCTTC	5 cut(s)	122, 235, 515, 856, 927
HpyCH4III	ACNGT	4 cut(s)	35, 182, 729, 754
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	3 cut(s)	116, 975, 1464
Hsp92II	CATG	8 cut(s)	94, 176, 271, 547, 964, 996, 1281, 1433
HspAI	GCGC	2 cut(s)	670, 1384
KpnI	GGTACC	1 cut(s)	34
Kzo9I	GATC	9 cut(s)	46, 862, 866, 987, 1311, 1319, 1376, 1456, 1460
LmnI	GCTCC	2 cut(s)	860, 1297
Lsp1109I	GCAGC	3 cut(s)	478, 503, 721
LweI	GCATC	2 cut(s)	1065, 1481
MaeI	CTAG	3 cut(s)	60, 231, 681
MaeIII	GTNAC	2 cut(s)	458, 1093
MalI	GATC	9 cut(s)	48, 864, 868, 989, 1313, 1321, 1378, 1458, 1462
MboI	GATC	9 cut(s)	46, 862, 866, 987, 1311, 1319, 1376, 1456, 1460
MboII	GAAGA	6 cut(s)	35, 386, 560, 587, 648, 1377
MfeI	CAATTG	2 cut(s)	654, 1000
MflI	RGATCY	1 cut(s)	1376
MhlI	GDGCHC	2 cut(s)	368, 1263
MlsI	TGGCCA	1 cut(s)	597
MluNI	TGGCCA	1 cut(s)	597
MlyI	GAGTC	2 cut(s)	752, 922
MnlI	CCTC	9 cut(s)	7, 193, 481, 632, 829, 909, 935, 1157, 1197
Mox20I	TGGCCA	1 cut(s)	597
MroXI	GAANNNNTTC	1 cut(s)	1158
MscI	TGGCCA	1 cut(s)	597
MseI	TTAA	7 cut(s)	248, 285, 384, 512, 690, 801, 1486
MslI	CAYNNNNRTG	3 cut(s)	1071, 1329, 1396
Msp20I	TGGCCA	1 cut(s)	597
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	5 cut(s)	355, 536, 782, 860, 939
MunI	CAATTG	2 cut(s)	654, 1000
MvaI	CCWGG	5 cut(s)	355, 536, 782, 860, 939
MwoI	GCNNNNNNNGC	1 cut(s)	488
NcoI	CCATGG	1 cut(s)	543
NdeII	GATC	9 cut(s)	46, 862, 866, 987, 1311, 1319, 1376, 1456, 1460
NlaIII	CATG	8 cut(s)	94, 176, 271, 547, 964, 996, 1281, 1433
NlaIV	GGNNCC	2 cut(s)	32, 856
NmuCI	GTSAC	1 cut(s)	1093
NspI	RCATGY	2 cut(s)	271, 1281
PasI	CCCWGGG	1 cut(s)	354
PdmI	GAANNNNTTC	1 cut(s)	1158
PkrI	GCNGC	3 cut(s)	468, 493, 736
PleI	GAGTC	2 cut(s)	752, 921
PpsI	GAGTC	2 cut(s)	752, 921
Psp6I	CCWGG	5 cut(s)	353, 534, 780, 858, 937
PspGI	CCWGG	5 cut(s)	353, 534, 780, 858, 937
PspN4I	GGNNCC	2 cut(s)	32, 856
PspPI	GGNCC	2 cut(s)	357, 641
PstI	CTGCAG	1 cut(s)	1359
PsuI	RGATCY	1 cut(s)	1376
RsaI	GTAC	3 cut(s)	32, 715, 1050
RsaNI	GTAC	3 cut(s)	31, 714, 1049
RseI	CAYNNNNRTG	3 cut(s)	1071, 1329, 1396
SaqAI	TTAA	7 cut(s)	248, 285, 384, 512, 690, 801, 1486
SatI	GCNGC	3 cut(s)	467, 492, 735
Sau3AI	GATC	9 cut(s)	46, 862, 866, 987, 1311, 1319, 1376, 1456, 1460
Sau96I	GGNCC	2 cut(s)	357, 641
SchI	GAGTC	2 cut(s)	752, 922
ScrFI	CCNGG	5 cut(s)	355, 536, 782, 860, 939
SduI	GDGCHC	2 cut(s)	368, 1263
SfaNI	GCATC	2 cut(s)	1065, 1481
SfcI	CTRYAG	1 cut(s)	1355
SmiMI	CAYNNNNRTG	3 cut(s)	1071, 1329, 1396
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
SpeI	ACTAGT	1 cut(s)	230
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	3 cut(s)	60, 231, 681
StyD4I	CCNGG	5 cut(s)	353, 534, 780, 858, 937
StyI	CCWWGG	2 cut(s)	360, 543
TaaI	ACNGT	4 cut(s)	35, 182, 729, 754
TaqI	TCGA	8 cut(s)	45, 145, 701, 865, 1162, 1314, 1426, 1459
TatI	WGTACW	1 cut(s)	713
Tru1I	TTAA	7 cut(s)	248, 285, 384, 512, 690, 801, 1486
Tru9I	TTAA	7 cut(s)	248, 285, 384, 512, 690, 801, 1486
TscAI	CASTG	2 cut(s)	828, 1098
TseFI	GTSAC	1 cut(s)	1093
TseI	GCWGC	3 cut(s)	466, 491, 734
Tsp45I	GTSAC	1 cut(s)	1093
TspDTI	ATGAA	5 cut(s)	17, 31, 326, 534, 1337
TspGWI	ACGGA	1 cut(s)	608
TspRI	CASTG	2 cut(s)	828, 1098
XapI	RAATTY	7 cut(s)	148, 164, 377, 589, 838, 928, 979
XceI	RCATGY	2 cut(s)	271, 1281
XmnI	GAANNNNTTC	1 cut(s)	1158
XspI	CTAG	3 cut(s)	60, 231, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.