Rorug07G0288900

BEACH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002031
Physical Location & Seq
Forward (+)
28127822 .. 28128849
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0288900.1

Sequence Viewer

Length: 366 bp
ATGCATGAGGAGTCATTGACTAGGCACAAGGTTGATGATGATGATGTCCATGAAGGAGCTGTTCCAACATTGATGTTGGATCATGACAATAAAACACGAGCAAAGACTCTTAGCAATTCCATCAAGCAAAAACGGAAAGAGAAAGCTGGAAAATGGGAAGTCCCTCTGCCTAAGGTGAGGCCTGTGGCTGAAGATGAGATGTTTAAAGTGCTTAGAACGGGCAAACGCAAGAATGGTGTGAAGAAAAACCCTAATGGTCAAATGTATACCTCTCTTGGTGGCTTGACCAAGGGAACCATCATTGAGGTGAATGTAAGTGAGCTTGGTCTAGTCACACCTAACGGGAAAGTTGCATGTGTGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Beach DUF4704 DUF4800 Laminin_G_3 PH_BEACH WD40

Protein Analysis

121

Amino Acids

13.37

Weight (kDa)

9.52

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8e PF01201 79 - 118 2.3e-09 Ribosomal protein S8e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 266
AclWI GGATC 1 cut(s) 87
AcuI CTGAAG 1 cut(s) 210
AluBI AGCT 3 cut(s) 59, 146, 322
AluI AGCT 3 cut(s) 59, 146, 322
AlwI GGATC 1 cut(s) 87
AoxI GGCC 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 187, 319
AxyI CCTNAGG 1 cut(s) 171
BauI CACGAG 1 cut(s) 96
BccI CCATC 2 cut(s) 128, 305
BfaI CTAG 2 cut(s) 21, 329
BmiI GGNNCC 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 288
Bse21I CCTNAGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 23
BshFI GGCC 1 cut(s) 181
BslFI GGGAC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 79
BspANI GGCC 1 cut(s) 181
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 295
BspPI GGATC 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 1 cut(s) 79
BssNAI GTATAC 1 cut(s) 267
BssSI CACGAG 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 288
Bst1107I GTATAC 1 cut(s) 267
Bst2BI CACGAG 1 cut(s) 96
BstDEI CTNAG 3 cut(s) 110, 171, 212
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstNSI RCATGY 1 cut(s) 357
BstZ17I GTATAC 1 cut(s) 267
Bsu36I CCTNAGG 1 cut(s) 171
BsuRI GGCC 1 cut(s) 181
CciI TCATGA 1 cut(s) 82
CviAII CATG 4 cut(s) 5, 50, 83, 354
CviJI RGCY 6 cut(s) 59, 146, 181, 188, 282, 322
CviKI_1 RGCY 6 cut(s) 59, 146, 181, 188, 282, 322
DdeI CTNAG 3 cut(s) 110, 171, 212
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DraI TTTAAA 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 288
Eco147I AGGCCT 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 210
Eco81I CCTNAGG 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 288
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 4 cut(s) 8, 53, 86, 357
FaiI YATR 5 cut(s) 6, 51, 84, 267, 355
FaqI GGGAC 1 cut(s) 146
FatI CATG 4 cut(s) 4, 49, 82, 353
FblI GTMKAC 1 cut(s) 266
FspBI CTAG 2 cut(s) 21, 329
HaeIII GGCC 1 cut(s) 181
Hin1II CATG 4 cut(s) 8, 53, 86, 357
HinfI GANTC 2 cut(s) 11, 106
HphI GGTGA 2 cut(s) 187, 319
Hpy166II GTNNAC 1 cut(s) 267
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 267
HpyAV CCTTC 1 cut(s) 47
HpyCH4V TGCA 2 cut(s) 4, 353
HpyF3I CTNAG 3 cut(s) 110, 171, 212
Hsp92II CATG 4 cut(s) 8, 53, 86, 357
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 2 cut(s) 132, 195
MaeI CTAG 2 cut(s) 21, 329
MaeIII GTNAC 1 cut(s) 331
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 2 cut(s) 203, 253
MluCI AATT 1 cut(s) 115
MlyI GAGTC 2 cut(s) 20, 100
MmeI TCCRAC 2 cut(s) 57, 89
MnlI CCTC 4 cut(s) 171, 174, 280, 298
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 305
NdeII GATC 1 cut(s) 79
NlaIII CATG 4 cut(s) 8, 53, 86, 357
NlaIV GGNNCC 1 cut(s) 295
NmuCI GTSAC 1 cut(s) 331
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 357
PagI TCATGA 1 cut(s) 82
PceI AGGCCT 1 cut(s) 181
PleI GAGTC 2 cut(s) 19, 100
PpsI GAGTC 2 cut(s) 19, 100
PspN4I GGNNCC 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 305
SaqAI TTAA 1 cut(s) 204
Sau3AI GATC 1 cut(s) 79
SchI GAGTC 2 cut(s) 20, 100
SetI ASST 8 cut(s) 33, 61, 148, 177, 272, 309, 324, 340
SmiMI CAYNNNNRTG 1 cut(s) 305
Sse9I AATT 1 cut(s) 115
SseBI AGGCCT 1 cut(s) 181
SspMI CTAG 2 cut(s) 21, 329
StuI AGGCCT 1 cut(s) 181
StyI CCWWGG 1 cut(s) 288
TasI AATT 1 cut(s) 115
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseFI GTSAC 1 cut(s) 331
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 1 cut(s) 66
TspGWI ACGGA 1 cut(s) 148
XceI RCATGY 1 cut(s) 357
XmiI GTMKAC 1 cut(s) 266
XspI CTAG 2 cut(s) 21, 329
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.