Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002031

Physical Location & Seq

Genomic Coordinates Forward (+)

25985680 .. 25996573

Gene Structure 10894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1200500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAATATTGTCAAGGGTGTTGCTGACCTTATTCGAAGGACTGCCGGTGGCCACGATGGAGATTCTTCTTTAGGGACCCAAGCGCAGAAGTTCTCTTCTCCTGGCTTGAAGATCCACTTTAGTGAAGTTGGAGATGAGGCAGTCCTAAACATACTTTGGGATCGATATGAAAAAGCTGTTGATAAGGTGGAAAAGAGGAGGCTGTTTCATGTTTTTCTTAAGCAGTTTCTGGTTGTATTCAAGAATTGGGAACCAGTAAATACAGGCCAAATGTCAGAGGCTTCTTCAAGTACCATTCAATATACAGAATATTCATCACATTCGGATGATGTAGTTATTGGCTGCTTTGCTGGACATCCTGCAGAAGTCATTTTAGTATTGACTGAAGAGATTACACAATTAACTTCTATGGTTGCTGAGTTAAATACCAGTATAGTGCGATTGTCAGCAGACTTCTCTGGCCATTCCGCAACCTTAAATATCATTTCGGAAGGAATGCCACTCCTGGATGCTCTTATGATTGTTACTCGCTCATTACATAATTGCAGAGTTTTTGGATACTACAGTGGGATTCAAAAGCTAACGGCATTAATGAAAGGTATTAGTAGTATTACTCTCCTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beach DUF4704 DUF4800 Laminin_G_3 PH_BEACH WD40

Protein Analysis

209

Amino Acids

22.88

Weight (kDa)

5.96

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58230 AT1G58230 AT1G58230
fragaria_vesca	FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530 FvH4_5g34530
malus_domestica	MD08G1199800.v1.1 MD08G1200500.v1.1 MD08G1200600.v1.1 MD15G1387600.v1.1
prunus_persica	Prupe.1G534000_v2.0.a1 Prupe.1G534000_v2.0.a1 Prupe.1G534000_v2.0.a1 Prupe.1G534000_v2.0.a1
pyrus_communis	pycom08g17380 pycom08g17390 pycom08g17400 pycom15g34760 pycom15g34770 pycom15g34780 pycom15g34790
rosa_chinensis	RchiOBHm_Chr7g0235181
rosa_laevigata	RLG00000001175
rosa_multiflora	Rmu_co8395887.1_g000001 Rmu_sc0004657.1_g000019
rosa_roxburghii	Rroxscaffold_3G00226200
rosa_rugosa	Rorug07G0288800 Rorug07G0288900
rosa_samantha	Rh7AG443400 Rh7BG416100 Rh7CG464500 Rh7DG432900
rosa_wichuraiana	Rw7G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	2 cut(s)	106, 168
AcoI	YGGCCR	2 cut(s)	49, 460
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	1 cut(s)	292
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	5 cut(s)	109, 241, 288, 299, 575
AjnI	CCWGG	2 cut(s)	100, 504
AleI	CACNNNNGTG	1 cut(s)	120
AluBI	AGCT	2 cut(s)	176, 580
AluI	AGCT	2 cut(s)	176, 580
AlwI	GGATC	2 cut(s)	106, 168
AlwNI	CAGNNNCTG	1 cut(s)	229
AoxI	GGCC	3 cut(s)	49, 265, 460
ApeKI	GCWGC	1 cut(s)	342
AseI	ATTAAT	1 cut(s)	590
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	75
AsuII	TTCGAA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	75
BaeI	ACNNNNGTAYC	2 cut(s)	550, 583
BalI	TGGCCA	2 cut(s)	51, 462
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	600
BciT130I	CCWGG	2 cut(s)	102, 506
BciVI	GTATCC	1 cut(s)	551
BfaI	CTAG	1 cut(s)	620
BfmI	CTRYAG	2 cut(s)	360, 562
BfrI	CTTAAG	1 cut(s)	218
BfuI	GTATCC	1 cut(s)	551
BisI	GCNGC	1 cut(s)	343
BlsI	GCNGC	1 cut(s)	344
Bme1390I	CCNGG	2 cut(s)	102, 506
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	3 cut(s)	76, 77, 252
BmrFI	CCNGG	2 cut(s)	102, 506
BmsI	GCATC	1 cut(s)	499
Bpu14I	TTCGAA	1 cut(s)	34
Bsa29I	ATCGAT	1 cut(s)	163
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	2 cut(s)	254, 429
BseBI	CCWGG	2 cut(s)	102, 506
BseCI	ATCGAT	1 cut(s)	163
BseGI	GGATG	3 cut(s)	331, 355, 514
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	2 cut(s)	254, 429
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	329
BshFI	GGCC	3 cut(s)	51, 267, 462
BshVI	ATCGAT	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	501
BsnI	GGCC	3 cut(s)	51, 267, 462
Bsp119I	TTCGAA	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	111, 160
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	3 cut(s)	51, 267, 462
BspCNI	CTCAG	1 cut(s)	409
BspDI	ATCGAT	1 cut(s)	163
BspLI	GGNNCC	3 cut(s)	76, 77, 252
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	2 cut(s)	106, 168
BspT104I	TTCGAA	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	254, 429
BssAI	RCCGGY	1 cut(s)	44
BssMI	GATC	2 cut(s)	111, 160
Bst2UI	CCWGG	2 cut(s)	102, 506
Bst4CI	ACNGT	1 cut(s)	566
Bst6I	CTCTTC	2 cut(s)	100, 381
BstAFI	CTTAAG	1 cut(s)	218
BstBI	TTCGAA	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	417
BstF5I	GGATG	3 cut(s)	331, 355, 514
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	2 cut(s)	114, 163
BstMBI	GATC	2 cut(s)	111, 160
BstNI	CCWGG	2 cut(s)	102, 506
BstSCI	CCNGG	2 cut(s)	100, 504
BstSFI	CTRYAG	2 cut(s)	360, 562
BstV1I	GCAGC	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
Bsu15I	ATCGAT	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	3 cut(s)	51, 267, 462
BsuTUI	ATCGAT	1 cut(s)	163
BtsCI	GGATG	3 cut(s)	331, 355, 514
BtsIMutI	CAGTG	1 cut(s)	571
CaiI	CAGNNNCTG	1 cut(s)	229
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	75
ClaI	ATCGAT	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	9 cut(s)	51, 105, 176, 202, 267, 281, 342, 462, 580
CviKI_1	RGCY	9 cut(s)	51, 105, 176, 202, 267, 281, 342, 462, 580
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	2 cut(s)	113, 162
DpnII	GATC	2 cut(s)	111, 160
EaeI	YGGCCR	2 cut(s)	49, 460
Eam1104I	CTCTTC	2 cut(s)	100, 381
EarI	CTCTTC	2 cut(s)	100, 381
Eco47I	GGWCC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	75
EcoRII	CCWGG	2 cut(s)	100, 504
FaeI	CATG	1 cut(s)	212
FaiI	YATR	8 cut(s)	152, 168, 210, 303, 410, 434, 518, 540
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	343
FokI	GGATG	3 cut(s)	338, 342, 521
Fsp4HI	GCNGC	1 cut(s)	343
FspBI	CTAG	1 cut(s)	620
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	343
HaeIII	GGCC	3 cut(s)	51, 267, 462
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	212
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	2 cut(s)	62, 571
HpaII	CCGG	1 cut(s)	45
Hpy188I	TCNGA	3 cut(s)	277, 325, 490
Hpy188III	TCNNGA	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	30, 485
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4V	TGCA	2 cut(s)	362, 546
HpyF3I	CTNAG	1 cut(s)	417
Hsp92II	CATG	1 cut(s)	212
HspAI	GCGC	1 cut(s)	83
KflI	GGGWCCC	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	111, 160
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	1 cut(s)	620
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	2 cut(s)	113, 162
MboI	GATC	2 cut(s)	111, 160
MboII	GAAGA	5 cut(s)	57, 87, 121, 276, 398
MflI	RGATCY	1 cut(s)	111
MlsI	TGGCCA	2 cut(s)	51, 462
MluCI	AATT	3 cut(s)	244, 398, 541
MluNI	TGGCCA	2 cut(s)	51, 462
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	4 cut(s)	130, 189, 192, 271
Mox20I	TGGCCA	2 cut(s)	51, 462
MscI	TGGCCA	2 cut(s)	51, 462
MseI	TTAA	5 cut(s)	219, 401, 422, 476, 590
MslI	CAYNNNNRTG	2 cut(s)	120, 324
Msp20I	TGGCCA	2 cut(s)	51, 462
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	102, 506
Mva1269I	GAATGC	1 cut(s)	501
MvaI	CCWGG	2 cut(s)	102, 506
NdeII	GATC	2 cut(s)	111, 160
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	3 cut(s)	76, 77, 252
NspV	TTCGAA	1 cut(s)	34
OliI	CACNNNNGTG	1 cut(s)	120
PctI	GAATGC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	62, 571
PfoI	TCCNGGA	1 cut(s)	504
PkrI	GCNGC	1 cut(s)	344
PpuMI	RGGWCCY	1 cut(s)	75
PshBI	ATTAAT	1 cut(s)	590
Psp5II	RGGWCCY	1 cut(s)	75
Psp6I	CCWGG	2 cut(s)	100, 504
PspGI	CCWGG	2 cut(s)	100, 504
PspN4I	GGNNCC	3 cut(s)	76, 77, 252
PspPI	GGNCC	1 cut(s)	75
PspPPI	RGGWCCY	1 cut(s)	75
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
RseI	CAYNNNNRTG	2 cut(s)	120, 324
SaqAI	TTAA	5 cut(s)	219, 401, 422, 476, 590
SatI	GCNGC	1 cut(s)	343
Sau3AI	GATC	2 cut(s)	111, 160
Sau96I	GGNCC	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	102, 506
SetI	ASST	6 cut(s)	30, 178, 189, 476, 582, 601
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	2 cut(s)	360, 562
SfuI	TTCGAA	1 cut(s)	34
SinI	GGWCC	1 cut(s)	75
SmiMI	CAYNNNNRTG	2 cut(s)	120, 324
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	3 cut(s)	244, 398, 541
SsiI	CCGC	1 cut(s)	468
SspI	AATATT	2 cut(s)	7, 311
SspMI	CTAG	1 cut(s)	620
StyD4I	CCNGG	2 cut(s)	100, 504
TaaI	ACNGT	1 cut(s)	566
TaqI	TCGA	2 cut(s)	34, 163
TasI	AATT	3 cut(s)	244, 398, 541
TfiI	GAWTC	2 cut(s)	62, 571
Tru1I	TTAA	5 cut(s)	219, 401, 422, 476, 590
Tru9I	TTAA	5 cut(s)	219, 401, 422, 476, 590
TscAI	CASTG	1 cut(s)	571
TseI	GCWGC	1 cut(s)	342
TspDTI	ATGAA	5 cut(s)	17, 183, 197, 303, 608
TspRI	CASTG	1 cut(s)	571
Vha464I	CTTAAG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	75
VspI	ATTAAT	1 cut(s)	590
XspI	CTAG	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.