Rorug07G0288800

BEACH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002031
Physical Location & Seq
Reverse (-)
28094305 .. 28096808
2504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0288800.1

Sequence Viewer

Length: 1158 bp
ATGTTGAGTTTAATGGAAGAAGTTATGAGTGAGCTGATGGGTAGGGAAGAGGTGAACGAACAAGGTCTTCCACCTGGTTTCAGGTTCCACCCAACTGATGAGGAGCTCATCACCTTTTACCTCGCTTCCAAGGTCTATAATGGCGCTTTCTGCGGCGTCGACATAGCTGAGGTCGATCTCAACAGATGTGAGCCCTGGGAGCTACCAGATGTGGCGAAGATGGGGGACAAAGAGTGGTACTTCTTCAGCCTCCGGGACCGGAAGTACCCGACCGGCCTTAGGACCAACCGAGCCACCGGCGCTGGCTACTGGAAAGCCACCGGCAAAGACAAAGAGGTTTACAGTGCCTCCAGTGGGGCCCTTCTTGGGATGAAGAAGACCCTCGTCTTCTACAAGGGCCGTGCCCCCCGCGGCCAAAAGACCAAGTGGGTCATGCACGAGTACCGCCTCGACGGGGACTTCTCCTCCTACCGCCACACGTGCAAGGATGAATGGGTGATATGCAGAATACATAACAAATCTGGGGACAAGAAGAACCCAATGCAAGCTCAAGGGCAAGGGGAAGGGCAACAGAGTAATTTCCTGCAACAAGTTGTGGAAGCTGCTTCTGCTTCTTCCAGAACTGGCTGCTTGCCTCCATTGCTGGAATGTCAATCTCAGACGACTCATCAGAACCCTAGTTTTCTGCAAAGCCCTAGTTTACTGCAGATTCAAGAAAACGACTTGATGAAAAGTCGTAATCAACTGTTTCAACAGCCCTCATTATCATCATCATCTTCATCCTCAGCAGCAGCACTGCACTCCATGCTCTTCAAGTCACTCCTCTATTCACATCAAGATCAAGCTGGCACTGGTACTAGTGCTCCTAAACAGTGCAAGGCAGAGGCTACTAATCTTTCCCAGTTCCAAACTCCACCTCTTAATGCTGCTAACTTCAACTACTTGATGGAAAAGAATCACTCTCATCATCAACCAAACGTCGCAGACTCATTGCTTCAGTTTCATTACCATCCCCGAAATGCACTCTCTTTCGATGACTTCCATTATTACAATGGTGTGTTGGGGCTTTCTACATCTGCTACTGCTGCTGTAGATGCTGAGACTTCTTCCGCTTCCATTGGTGGTTTCAACAGGGCAGAGGCTTTCAGACCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Beach DUF4704 DUF4800 Laminin_G_3 PH_BEACH WD40

Protein Analysis

385

Amino Acids

43.02

Weight (kDa)

6.67

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 150 7.9e-47 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 411
AciI CCGC 6 cut(s) 153, 409, 411, 445, 472, 1110
AcoI YGGCCR 1 cut(s) 412
AcuI CTGAAG 2 cut(s) 229, 980
AcvI CACGTG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 4 cut(s) 239, 266, 443, 856
AfiI CCNNNNNNNGG 4 cut(s) 279, 354, 366, 454
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 5 cut(s) 713, 752, 814, 937, 1129
AhlI ACTAGT 1 cut(s) 857
AjnI CCWGG 2 cut(s) 73, 194
AluBI AGCT 7 cut(s) 34, 106, 167, 202, 548, 602, 845
AluI AGCT 7 cut(s) 34, 106, 167, 202, 548, 602, 845
Alw21I GWGCWC 2 cut(s) 108, 865
Alw26I GTCTC 1 cut(s) 1094
AoxI GGCC 4 cut(s) 274, 357, 397, 412
ApaI GGGCCC 1 cut(s) 361
ApeKI GCWGC 6 cut(s) 602, 627, 788, 791, 926, 1085
AspLEI GCGC 2 cut(s) 146, 302
AspS9I GGNCC 5 cut(s) 256, 282, 357, 358, 397
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 3 cut(s) 64, 103, 508
AvaII GGWCC 2 cut(s) 256, 282
AxyI CCTNAGG 1 cut(s) 278
BaeGI GKGCMC 2 cut(s) 361, 406
BanII GRGCYC 3 cut(s) 108, 195, 361
BauI CACGAG 1 cut(s) 437
BbrPI CACGTG 1 cut(s) 480
BbsI GAAGAC 3 cut(s) 59, 379, 383
Bbv12I GWGCWC 2 cut(s) 108, 865
BbvCI CCTCAGC 2 cut(s) 168, 784
BbvI GCAGC 6 cut(s) 589, 614, 800, 803, 913, 1072
BccI CCATC 4 cut(s) 31, 214, 940, 1017
BceAI ACGGC 1 cut(s) 384
BciT130I CCWGG 2 cut(s) 75, 196
BcnI CCSGG 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 1094
BcuI ACTAGT 1 cut(s) 857
BfaI CTAG 3 cut(s) 678, 696, 858
BfmI CTRYAG 2 cut(s) 704, 1089
BfoI RGCGCY 2 cut(s) 147, 303
BisI GCNGC 8 cut(s) 154, 412, 603, 628, 789, 792, 927, 1086
BlsI GCNGC 8 cut(s) 155, 413, 604, 629, 790, 793, 928, 1087
Bme1390I CCNGG 3 cut(s) 75, 196, 254
Bme18I GGWCC 2 cut(s) 256, 282
BmgT120I GGNCC 5 cut(s) 256, 282, 357, 358, 397
BmiI GGNNCC 4 cut(s) 86, 257, 358, 359
BmrFI CCNGG 3 cut(s) 75, 196, 254
BmrI ACTGGG 1 cut(s) 895
BmsI GCATC 1 cut(s) 1084
BmuI ACTGGG 1 cut(s) 895
BoxI GACNNNNGTC 1 cut(s) 383
BpiI GAAGAC 3 cut(s) 59, 379, 383
BpmI CTGGAG 1 cut(s) 334
Bpu10I CCTNAGC 2 cut(s) 168, 784
BpuEI CTTGAG 1 cut(s) 534
BpuMI CCSGG 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 480
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 4 cut(s) 129, 194, 195, 409
BsaWI WCCGGW 1 cut(s) 258
BsaXI ACNNNNNCTCC 6 cut(s) 332, 362, 449, 479, 847, 877
Bsc4I CCNNNNNNNGG 4 cut(s) 279, 354, 366, 454
Bse118I RCCGGY 3 cut(s) 272, 296, 320
Bse1I ACTGG 5 cut(s) 314, 351, 628, 856, 901
Bse21I CCTNAGG 1 cut(s) 278
Bse3DI GCAATG 2 cut(s) 638, 989
BseBI CCWGG 2 cut(s) 75, 196
BseDI CCNNGG 4 cut(s) 129, 194, 195, 409
BseGI GGATG 4 cut(s) 375, 493, 779, 1009
BseLI CCNNNNNNNGG 4 cut(s) 279, 354, 366, 454
BseMI GCAATG 2 cut(s) 638, 989
BseMII CTCAG 4 cut(s) 159, 671, 798, 1089
BseNI ACTGG 5 cut(s) 314, 351, 628, 856, 901
BseRI GAGGAG 3 cut(s) 116, 454, 812
BseSI GKGCMC 2 cut(s) 361, 406
BseXI GCAGC 6 cut(s) 589, 614, 800, 803, 913, 1072
BsgI GTGCAG 1 cut(s) 782
Bsh1236I CGCG 1 cut(s) 411
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 4 cut(s) 276, 359, 399, 414
BsiEI CGRYCG 1 cut(s) 273
BsiHKAI GWGCWC 2 cut(s) 108, 865
BsiSI CCGG 5 cut(s) 253, 259, 273, 297, 321
BslFI GGGAC 4 cut(s) 239, 269, 470, 539
BslI CCNNNNNNNGG 4 cut(s) 279, 354, 366, 454
BsmAI GTCTC 1 cut(s) 1094
BsmFI GGGAC 4 cut(s) 239, 269, 470, 539
BsnI GGCC 4 cut(s) 276, 359, 399, 414
Bsp120I GGGCCC 1 cut(s) 357
Bsp1286I GDGCHC 5 cut(s) 108, 195, 361, 406, 865
Bsp143I GATC 2 cut(s) 175, 838
BspACI CCGC 6 cut(s) 153, 409, 411, 445, 472, 1110
BspANI GGCC 4 cut(s) 276, 359, 399, 414
BspCNI CTCAG 4 cut(s) 160, 670, 797, 1090
BspFNI CGCG 1 cut(s) 411
BspLI GGNNCC 4 cut(s) 86, 257, 358, 359
BspMAI CTGCAG 1 cut(s) 708
BspQI GCTCTTC 1 cut(s) 815
BsrDI GCAATG 2 cut(s) 638, 989
BsrFI RCCGGY 3 cut(s) 272, 296, 320
BsrI ACTGG 5 cut(s) 314, 351, 628, 856, 901
BssAI RCCGGY 3 cut(s) 272, 296, 320
BssECI CCNNGG 4 cut(s) 129, 194, 195, 409
BssMI GATC 2 cut(s) 175, 838
BssNI GRCGYC 1 cut(s) 156
BssSI CACGAG 1 cut(s) 437
BssT1I CCWWGG 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 437
Bst2UI CCWGG 2 cut(s) 75, 196
Bst4CI ACNGT 3 cut(s) 344, 747, 873
Bst6I CTCTTC 2 cut(s) 42, 815
BstACI GRCGYC 1 cut(s) 156
BstAPI GCANNNNNTGC 1 cut(s) 805
BstBAI YACGTR 1 cut(s) 480
BstC8I GCNNGC 4 cut(s) 304, 546, 632, 847
BstDEI CTNAG 5 cut(s) 168, 278, 657, 784, 1098
BstDSI CCRYGG 1 cut(s) 409
BstF5I GGATG 4 cut(s) 375, 493, 779, 1009
BstFNI CGCG 1 cut(s) 411
BstH2I RGCGCY 2 cut(s) 147, 303
BstHHI GCGC 2 cut(s) 146, 302
BstKTI GATC 2 cut(s) 178, 841
BstMAI GTCTC 1 cut(s) 1094
BstMBI GATC 2 cut(s) 175, 838
BstMCI CGRYCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 9 cut(s) 150, 199, 299, 480, 608, 640, 805, 1085, 1094
BstNI CCWGG 2 cut(s) 75, 196
BstPAI GACNNNNGTC 1 cut(s) 383
BstSCI CCNGG 3 cut(s) 73, 194, 252
BstSFI CTRYAG 2 cut(s) 704, 1089
BstSLI GKGCMC 2 cut(s) 361, 406
BstUI CGCG 1 cut(s) 411
BstV1I GCAGC 6 cut(s) 589, 614, 800, 803, 913, 1072
BstV2I GAAGAC 3 cut(s) 59, 379, 383
Bsu36I CCTNAGG 1 cut(s) 278
BsuRI GGCC 4 cut(s) 276, 359, 399, 414
BtgI CCRYGG 1 cut(s) 409
BtsCI GGATG 4 cut(s) 375, 493, 779, 1009
BtsI GCAGTG 1 cut(s) 794
BtsIMutI CAGTG 5 cut(s) 349, 358, 794, 849, 878
Cac8I GCNNGC 4 cut(s) 304, 546, 632, 847
CfoI GCGC 2 cut(s) 146, 302
Cfr10I RCCGGY 3 cut(s) 272, 296, 320
Cfr13I GGNCC 5 cut(s) 256, 282, 357, 358, 397
Cfr42I CCGCGG 1 cut(s) 412
CseI GACGC 1 cut(s) 145
CsiI ACCWGGT 1 cut(s) 73
Csp6I GTAC 4 cut(s) 238, 265, 442, 855
CviAII CATG 2 cut(s) 433, 805
CviQI GTAC 4 cut(s) 238, 265, 442, 855
DdeI CTNAG 5 cut(s) 168, 278, 657, 784, 1098
DpnI GATC 2 cut(s) 177, 840
DpnII GATC 2 cut(s) 175, 838
EaeI YGGCCR 1 cut(s) 412
Eam1104I CTCTTC 2 cut(s) 42, 815
EarI CTCTTC 2 cut(s) 42, 815
Ecl136II GAGCTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 129
Eco24I GRGCYC 3 cut(s) 108, 195, 361
Eco47I GGWCC 2 cut(s) 256, 282
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 2 cut(s) 229, 980
Eco72I CACGTG 1 cut(s) 480
Eco81I CCTNAGG 1 cut(s) 278
EcoICRI GAGCTC 1 cut(s) 106
EcoO109I RGGNCCY 2 cut(s) 357, 358
EcoRII CCWGG 2 cut(s) 73, 194
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 3 cut(s) 108, 195, 361
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 2 cut(s) 436, 808
FaiI YATR 7 cut(s) 26, 138, 164, 434, 502, 513, 806
FaqI GGGAC 4 cut(s) 239, 269, 470, 539
FatI CATG 2 cut(s) 432, 804
FauI CCCGC 1 cut(s) 416
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 8 cut(s) 154, 412, 603, 628, 789, 792, 927, 1086
FokI GGATG 4 cut(s) 382, 500, 766, 996
FriOI GRGCYC 3 cut(s) 108, 195, 361
Fsp4HI GCNGC 8 cut(s) 154, 412, 603, 628, 789, 792, 927, 1086
FspBI CTAG 3 cut(s) 678, 696, 858
GlaI GCGC 2 cut(s) 145, 301
GluI GCNGC 8 cut(s) 154, 412, 603, 628, 789, 792, 927, 1086
GsuI CTGGAG 1 cut(s) 334
HaeII RGCGCY 2 cut(s) 147, 303
HaeIII GGCC 4 cut(s) 276, 359, 399, 414
HapII CCGG 5 cut(s) 253, 259, 273, 297, 321
HgaI GACGC 1 cut(s) 145
HhaI GCGC 2 cut(s) 146, 302
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 2 cut(s) 436, 808
Hin6I GCGC 2 cut(s) 144, 300
HinP1I GCGC 2 cut(s) 144, 300
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 4 cut(s) 664, 709, 955, 986
HpaII CCGG 5 cut(s) 253, 259, 273, 297, 321
HphI GGTGA 3 cut(s) 64, 103, 508
Hpy166II GTNNAC 4 cut(s) 55, 160, 340, 701
Hpy188I TCNGA 3 cut(s) 660, 672, 1148
Hpy188III TCNNGA 3 cut(s) 618, 713, 836
Hpy8I GTNNAC 4 cut(s) 55, 160, 340, 701
Hpy99I CGWCG 3 cut(s) 161, 455, 983
HpyAV CCTTC 2 cut(s) 371, 557
HpyCH4III ACNGT 3 cut(s) 344, 747, 873
HpyCH4IV ACGT 2 cut(s) 479, 978
HpyF10VI GCNNNNNNNGC 9 cut(s) 150, 199, 299, 480, 608, 640, 805, 1085, 1094
HpyF3I CTNAG 5 cut(s) 168, 278, 657, 784, 1098
HpySE526I ACGT 2 cut(s) 479, 978
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 2 cut(s) 436, 808
HspAI GCGC 2 cut(s) 144, 300
KspI CCGCGG 1 cut(s) 412
Kzo9I GATC 2 cut(s) 175, 838
LguI GCTCTTC 1 cut(s) 815
LmnI GCTCC 3 cut(s) 103, 199, 868
Lsp1109I GCAGC 6 cut(s) 589, 614, 800, 803, 913, 1072
LweI GCATC 1 cut(s) 1084
MabI ACCWGGT 1 cut(s) 73
MaeI CTAG 3 cut(s) 678, 696, 858
MaeII ACGT 2 cut(s) 479, 978
MaeIII GTNAC 1 cut(s) 816
MalI GATC 2 cut(s) 177, 840
MboI GATC 2 cut(s) 175, 838
MhlI GDGCHC 5 cut(s) 108, 195, 361, 406, 865
MluCI AATT 1 cut(s) 577
MlyI GAGTC 2 cut(s) 658, 980
MseI TTAA 2 cut(s) 11, 921
MspA1I CMGCKG 1 cut(s) 411
MspI CCGG 5 cut(s) 253, 259, 273, 297, 321
MspR9I CCNGG 3 cut(s) 75, 196, 254
MvaI CCWGG 2 cut(s) 75, 196
MvnI CGCG 1 cut(s) 411
MwoI GCNNNNNNNGC 9 cut(s) 150, 199, 299, 480, 608, 640, 805, 1085, 1094
NciI CCSGG 1 cut(s) 254
NdeII GATC 2 cut(s) 175, 838
NlaIII CATG 2 cut(s) 436, 808
NlaIV GGNNCC 4 cut(s) 86, 257, 358, 359
NmuCI GTSAC 1 cut(s) 816
PasI CCCWGGG 1 cut(s) 195
PciSI GCTCTTC 1 cut(s) 815
PfeI GAWTC 2 cut(s) 709, 955
PfoI TCCNGGA 1 cut(s) 252
PkrI GCNGC 8 cut(s) 155, 413, 604, 629, 790, 793, 928, 1087
PleI GAGTC 2 cut(s) 658, 980
PmaCI CACGTG 1 cut(s) 480
PmlI CACGTG 1 cut(s) 480
PpsI GAGTC 2 cut(s) 658, 980
Ppu21I YACGTR 1 cut(s) 480
PshAI GACNNNNGTC 1 cut(s) 383
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 2 cut(s) 73, 194
PspCI CACGTG 1 cut(s) 480
PspGI CCWGG 2 cut(s) 73, 194
PspN4I GGNNCC 4 cut(s) 86, 257, 358, 359
PspOMI GGGCCC 1 cut(s) 357
PspPI GGNCC 5 cut(s) 256, 282, 357, 358, 397
PstI CTGCAG 1 cut(s) 708
RsaI GTAC 4 cut(s) 239, 266, 443, 856
RsaNI GTAC 4 cut(s) 238, 265, 442, 855
SacI GAGCTC 1 cut(s) 108
SacII CCGCGG 1 cut(s) 412
SalI GTCGAC 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 815
SaqAI TTAA 2 cut(s) 11, 921
SatI GCNGC 8 cut(s) 154, 412, 603, 628, 789, 792, 927, 1086
Sau3AI GATC 2 cut(s) 175, 838
Sau96I GGNCC 5 cut(s) 256, 282, 357, 358, 397
SchI GAGTC 2 cut(s) 658, 980
ScrFI CCNGG 3 cut(s) 75, 196, 254
SduI GDGCHC 5 cut(s) 108, 195, 361, 406, 865
SexAI ACCWGGT 1 cut(s) 73
SfaNI GCATC 1 cut(s) 1084
SfcI CTRYAG 2 cut(s) 704, 1089
Sfr303I CCGCGG 1 cut(s) 412
SgrAI CRCCGGYG 1 cut(s) 296
SgrBI CCGCGG 1 cut(s) 412
SinI GGWCC 2 cut(s) 256, 282
SmlI CTYRAG 1 cut(s) 549
SmoI CTYRAG 1 cut(s) 549
SpeI ACTAGT 1 cut(s) 857
Sse9I AATT 1 cut(s) 577
SsiI CCGC 6 cut(s) 153, 409, 411, 445, 472, 1110
SspMI CTAG 3 cut(s) 678, 696, 858
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 3 cut(s) 73, 194, 252
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 3 cut(s) 344, 747, 873
TaiI ACGT 2 cut(s) 482, 981
TaqI TCGA 4 cut(s) 159, 174, 450, 1032
TasI AATT 1 cut(s) 577
TauI GCSGC 2 cut(s) 156, 414
TfiI GAWTC 2 cut(s) 709, 955
Tru1I TTAA 2 cut(s) 11, 921
Tru9I TTAA 2 cut(s) 11, 921
TscAI CASTG 5 cut(s) 349, 358, 801, 856, 878
TseFI GTSAC 1 cut(s) 816
TseI GCWGC 6 cut(s) 602, 627, 788, 791, 926, 1085
Tsp45I GTSAC 1 cut(s) 816
TspDTI ATGAA 5 cut(s) 386, 504, 743, 768, 992
TspRI CASTG 5 cut(s) 349, 358, 801, 856, 878
VpaK11BI GGWCC 2 cut(s) 256, 282
XcmI CCANNNNNNNNNTGG 1 cut(s) 1049
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 3 cut(s) 678, 696, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.