Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008584

Physical Location & Seq

Genomic Coordinates Forward (+)

26587222 .. 26590083

Gene Structure 2862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1205200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCTTCTTTCTCTAGTCCAAACCACCTTAGCATCATCCCCATCTTTCCACTCCTCACACTTTCAGATTCTGAACAATCCCACTGCTGTGCTGCCCAAATCTCCCTTTCTTGGTCTTGGATTTGAACCCATAACAAATCCCCTCAAAAGCTCGCATTTTTACACAAAACCCAGAAACCCCAAGCTCAGAATCCATGCTTCTCTGCTTGAAGCTCCGGTCCTCTGGGCTGGCAGGCTCTGCATCTTCTATGCTCTCTTGAAGACTGGTTTGGCTGGATCTCCAGCTAGTCCACTTCTGTCAGATTTGGGAAGAGCTGAAGGTGAAGTAGGTGATGGGGTTTTTAGTGGGTCTGTTGATTTGGGGTTCTCTAAGTGGTTGAACAGCATTCAAGGGAAACCAGCAAAAGAAGCTGCTGATAAAAGGAAATTAGTAAGCAAATGGCATCCTACAACAAAGGGCACACTCAGAAGGAACTACAGGGTACCATCTAAATCTGAAGGGCGTCGTCTTCTGAAAGGCATTGCTTCCTTACTGTCAGACGACGATCACTTTGTAGATGCAACCTCCCACAAGGGTTGTCAGATCAGGAGGGAGACCGCACATGGAGAAAGTGTCTGTTGCAACAATGTGAGGGCTCTGTTTGATGAGCTTCCAACTCCACACCTAGTTGTGGAGATCACTCCTTTTCCGGCTGGCTCTCTTACAGAAAATGATTACACTAAAGCCGAGAAATTAGAGAGGGTGCTAAGATCAGGTCCTCATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

27.88

Weight (kDa)

9.49

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G32930 AT3G32930
fragaria_vesca	FvH4_3g44830
malus_domestica	MD08G1205200.v1.1
prunus_persica	Prupe.1G537200_v2.0.a1
pyrus_communis	pycom08g17740
rosa_chinensis	RchiOBHm_Chr5g0081531
rosa_laevigata	RLG00000036945
rosa_multiflora	Rmu_co8505191.1_g000002 Rmu_sc0004657.1_g000055 Rmu_sc0007702.1_g000001 Rmu_sc0037529.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002020
rosa_rugosa	Rorug05G0411800 Rorug05G0477000 Rorug05G0477100
rosa_samantha	Rh5AG528400 Rh5BG553200 Rh5CG576000 Rh5DG563300 Rh7AG444400
rosa_wichuraiana	Rw5G049160 Rw7G036920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	481
AccB1I	GGYRCC	1 cut(s)	481
AciI	CCGC	1 cut(s)	597
AclWI	GGATC	1 cut(s)	283
AcuI	CTGAAG	2 cut(s)	336, 516
AcyI	GRCGYC	1 cut(s)	502
AfaI	GTAC	1 cut(s)	483
AfiI	CCNNNNNNNGG	2 cut(s)	110, 670
AgsI	TTSAA	5 cut(s)	125, 209, 259, 379, 389
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	7 cut(s)	150, 184, 212, 284, 314, 410, 649
AluI	AGCT	7 cut(s)	150, 184, 212, 284, 314, 410, 649
Alw26I	GTCTC	1 cut(s)	587
AlwI	GGATC	1 cut(s)	283
AlwNI	CAGNNNCTG	2 cut(s)	70, 237
ApeKI	GCWGC	2 cut(s)	91, 410
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
Asp718I	GGTACC	1 cut(s)	481
AspS9I	GGNCC	2 cut(s)	217, 755
AsuHPI	GGTGA	2 cut(s)	332, 341
AvaII	GGWCC	2 cut(s)	217, 755
BaeGI	GKGCMC	1 cut(s)	461
BanI	GGYRCC	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	637
BbsI	GAAGAC	2 cut(s)	266, 500
BbvI	GCAGC	2 cut(s)	78, 397
BccI	CCATC	3 cut(s)	49, 326, 493
BcoDI	GTCTC	1 cut(s)	587
BfaI	CTAG	3 cut(s)	14, 285, 665
BfmI	CTRYAG	1 cut(s)	475
BisI	GCNGC	2 cut(s)	92, 411
BlsI	GCNGC	2 cut(s)	93, 412
Bme18I	GGWCC	2 cut(s)	217, 755
BmgT120I	GGNCC	2 cut(s)	217, 755
BmiI	GGNNCC	1 cut(s)	483
BmsI	GCATC	4 cut(s)	41, 249, 451, 547
BpiI	GAAGAC	2 cut(s)	266, 500
BpmI	CTGGAG	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	502
BsaI	GGTCTC	1 cut(s)	587
BsaWI	WCCGGW	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 670
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	519
BseGI	GGATG	2 cut(s)	35, 442
BseLI	CCNNNNNNNGG	2 cut(s)	110, 670
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	2 cut(s)	199, 478
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	461
BseXI	GCAGC	2 cut(s)	78, 397
BshNI	GGYRCC	1 cut(s)	481
BsiSI	CCGG	2 cut(s)	215, 689
BslI	CCNNNNNNNGG	2 cut(s)	110, 670
BsmAI	GTCTC	1 cut(s)	587
BsmI	GAATGC	1 cut(s)	384
Bso31I	GGTCTC	1 cut(s)	587
Bsp1286I	GDGCHC	2 cut(s)	461, 637
Bsp143I	GATC	5 cut(s)	275, 544, 582, 675, 749
BspACI	CCGC	1 cut(s)	597
BspCNI	CTCAG	2 cut(s)	198, 477
BspLI	GGNNCC	1 cut(s)	483
BspPI	GGATC	1 cut(s)	283
BspQI	GCTCTTC	1 cut(s)	304
BspT107I	GGYRCC	1 cut(s)	481
BspTNI	GGTCTC	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	268
BssMI	GATC	5 cut(s)	275, 544, 582, 675, 749
BssNI	GRCGYC	1 cut(s)	502
Bst4CI	ACNGT	1 cut(s)	534
Bst6I	CTCTTC	1 cut(s)	304
BstACI	GRCGYC	1 cut(s)	502
BstAPI	GCANNNNNTGC	1 cut(s)	237
BstC8I	GCNNGC	4 cut(s)	152, 229, 233, 694
BstDEI	CTNAG	5 cut(s)	28, 185, 369, 464, 746
BstF5I	GGATG	2 cut(s)	35, 442
BstKTI	GATC	5 cut(s)	278, 547, 585, 678, 752
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	5 cut(s)	275, 544, 582, 675, 749
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 407
BstSFI	CTRYAG	1 cut(s)	475
BstSLI	GKGCMC	1 cut(s)	461
BstV1I	GCAGC	2 cut(s)	78, 397
BstV2I	GAAGAC	2 cut(s)	266, 500
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	35, 442
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	4 cut(s)	152, 229, 233, 694
CaiI	CAGNNNCTG	2 cut(s)	70, 237
Cfr13I	GGNCC	2 cut(s)	217, 755
CseI	GACGC	1 cut(s)	491
Csp6I	GTAC	1 cut(s)	482
CspCI	CAANNNNNGTGG	2 cut(s)	557, 592
CviAII	CATG	3 cut(s)	194, 602, 761
CviQI	GTAC	1 cut(s)	482
DdeI	CTNAG	5 cut(s)	28, 185, 369, 464, 746
DpnI	GATC	5 cut(s)	277, 546, 584, 677, 751
DpnII	GATC	5 cut(s)	275, 544, 582, 675, 749
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	637
Eco31I	GGTCTC	1 cut(s)	587
Eco47I	GGWCC	2 cut(s)	217, 755
Eco57I	CTGAAG	2 cut(s)	336, 516
EcoO109I	RGGNCCY	1 cut(s)	755
EcoT38I	GRGCYC	1 cut(s)	637
FaeI	CATG	3 cut(s)	197, 605, 764
FaiI	YATR	5 cut(s)	131, 195, 249, 603, 762
FatI	CATG	3 cut(s)	193, 601, 760
Fnu4HI	GCNGC	2 cut(s)	92, 411
FokI	GGATG	2 cut(s)	22, 429
FriOI	GRGCYC	1 cut(s)	637
Fsp4HI	GCNGC	2 cut(s)	92, 411
FspBI	CTAG	3 cut(s)	14, 285, 665
GluI	GCNGC	2 cut(s)	92, 411
GsuI	CTGGAG	1 cut(s)	264
HapII	CCGG	2 cut(s)	215, 689
HgaI	GACGC	1 cut(s)	491
Hin1I	GRCGYC	1 cut(s)	502
Hin1II	CATG	3 cut(s)	197, 605, 764
HinfI	GANTC	2 cut(s)	67, 189
HpaII	CCGG	2 cut(s)	215, 689
HphI	GGTGA	2 cut(s)	332, 341
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	9 cut(s)	66, 72, 188, 301, 467, 496, 513, 538, 582
Hpy188III	TCNNGA	2 cut(s)	256, 586
Hpy8I	GTNNAC	1 cut(s)	290
Hpy99I	CGWCG	2 cut(s)	507, 545
HpyAV	CCTTC	3 cut(s)	311, 462, 491
HpyCH4III	ACNGT	1 cut(s)	534
HpyCH4V	TGCA	3 cut(s)	240, 560, 621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 407
HpyF3I	CTNAG	5 cut(s)	28, 185, 369, 464, 746
Hsp92I	GRCGYC	1 cut(s)	502
Hsp92II	CATG	3 cut(s)	197, 605, 764
KpnI	GGTACC	1 cut(s)	485
Kzo9I	GATC	5 cut(s)	275, 544, 582, 675, 749
LguI	GCTCTTC	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	2 cut(s)	78, 397
LweI	GCATC	4 cut(s)	41, 249, 451, 547
MaeI	CTAG	3 cut(s)	14, 285, 665
MalI	GATC	5 cut(s)	277, 546, 584, 677, 751
MboI	GATC	5 cut(s)	275, 544, 582, 675, 749
MboII	GAAGA	4 cut(s)	235, 271, 321, 500
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	2 cut(s)	461, 637
MluCI	AATT	2 cut(s)	425, 731
MmeI	TCCRAC	1 cut(s)	677
MnlI	CCTC	8 cut(s)	64, 152, 230, 574, 582, 624, 732, 768
MslI	CAYNNNNRTG	1 cut(s)	86
MspI	CCGG	2 cut(s)	215, 689
Mva1269I	GAATGC	1 cut(s)	384
MwoI	GCNNNNNNNGC	2 cut(s)	237, 407
NdeII	GATC	5 cut(s)	275, 544, 582, 675, 749
NlaIII	CATG	3 cut(s)	197, 605, 764
NlaIV	GGNNCC	1 cut(s)	483
NmeAIII	GCCGAG	1 cut(s)	751
OliI	CACNNNNGTG	1 cut(s)	86
PciSI	GCTCTTC	1 cut(s)	304
PctI	GAATGC	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	67, 189
PkrI	GCNGC	2 cut(s)	93, 412
PpuMI	RGGWCCY	1 cut(s)	755
Psp5II	RGGWCCY	1 cut(s)	755
PspN4I	GGNNCC	1 cut(s)	483
PspPI	GGNCC	2 cut(s)	217, 755
PspPPI	RGGWCCY	1 cut(s)	755
PstNI	CAGNNNCTG	2 cut(s)	70, 237
PsuI	RGATCY	1 cut(s)	275
RsaI	GTAC	1 cut(s)	483
RsaNI	GTAC	1 cut(s)	482
RseI	CAYNNNNRTG	1 cut(s)	86
SapI	GCTCTTC	1 cut(s)	304
SatI	GCNGC	2 cut(s)	92, 411
Sau3AI	GATC	5 cut(s)	275, 544, 582, 675, 749
Sau96I	GGNCC	2 cut(s)	217, 755
SduI	GDGCHC	2 cut(s)	461, 637
SfaNI	GCATC	4 cut(s)	41, 249, 451, 547
SfcI	CTRYAG	1 cut(s)	475
SinI	GGWCC	2 cut(s)	217, 755
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	425, 731
SsiI	CCGC	1 cut(s)	597
SspMI	CTAG	3 cut(s)	14, 285, 665
TaaI	ACNGT	1 cut(s)	534
TasI	AATT	2 cut(s)	425, 731
TfiI	GAWTC	2 cut(s)	67, 189
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	2 cut(s)	91, 410
TspRI	CASTG	1 cut(s)	88
VpaK11BI	GGWCC	2 cut(s)	217, 755
XspI	CTAG	3 cut(s)	14, 285, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.