Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004657.1

Orthogroup ID

OG0008584

Physical Location & Seq

Genomic Coordinates Reverse (-)

260312 .. 261967

Gene Structure 1656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004657.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atgcttctttctctagttcaaagcaccatcacgtcctcacctttccaatcctcctcaaccttcaagattctgagccccactacttcttctaacctccccaaaagtctatttcttggctttggaattgaacccacaacaaatgcccttcaaagattcctccttttcaccaaaagctcacactctgccaaacccagaaacccctcctcactctccatcaatgcttctctgattgaagcaccaatcttctgggctagtaggctttgcatcttctatgctctcttgaaggctggtttggctggatctcaagctaactcacttgtctcagatttgggtgaaaatgaagttggcggtgttggtattgagtctgatgatttggggttttctaagtggttgaacaacatacagggaaaaccagtgaaagatgtagctgatagaaggaaattagtcagcaaatggcatcctacattcctaccacaaacgatacggacgtatccaaatccggatccgcgtatccaagcttatccgcgcgtatcgtacgtacccgtatcccggatcgatacgggatacgaggccaaaatggcatatccgtgcatgcttcatagtagggtaccatctaaatctgaaaggcggcgtgttctaaaagccattgcctctttattgtcagatgatgatcactttgtagatgccacctcccacaagggttgtcagattagaagggagactgctcatggagaaagtgtgtgttgcaacaatgtgaagggtctgtttgatgagctcccaactctacacctagttgtggaaatctctccttttcctgctggttctcttacagaaaaggcttacaccaaagctgagaaattagaaaaggtgctcagatccgatccttctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

32.68

Weight (kDa)

9.24

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G32930 AT3G32930
fragaria_vesca	FvH4_3g44830
malus_domestica	MD08G1205200.v1.1
prunus_persica	Prupe.1G537200_v2.0.a1
pyrus_communis	pycom08g17740
rosa_chinensis	RchiOBHm_Chr5g0081531
rosa_laevigata	RLG00000036945
rosa_multiflora	Rmu_co8505191.1_g000002 Rmu_sc0004657.1_g000055 Rmu_sc0007702.1_g000001 Rmu_sc0037529.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002020
rosa_rugosa	Rorug05G0411800 Rorug05G0477000 Rorug05G0477100
rosa_samantha	Rh5AG528400 Rh5BG553200 Rh5CG576000 Rh5DG563300 Rh7AG444400
rosa_wichuraiana	Rw5G049160 Rw7G036920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	607
AccB1I	GGYRCC	1 cut(s)	607
AccII	CGCG	3 cut(s)	508, 526, 528
AccIII	TCCGGA	1 cut(s)	499
AciI	CCGC	4 cut(s)	348, 506, 524, 628
AclWI	GGATC	6 cut(s)	307, 497, 510, 560, 870, 875
AfaI	GTAC	3 cut(s)	536, 540, 609
AfiI	CCNNNNNNNGG	2 cut(s)	549, 796
AgsI	TTSAA	7 cut(s)	20, 64, 128, 149, 233, 283, 394
AjiI	CACGTC	1 cut(s)	33
AjuI	GAANNNNNNNTTGG	4 cut(s)	275, 307, 327, 359
AluBI	AGCT	6 cut(s)	174, 308, 428, 518, 775, 851
AluI	AGCT	6 cut(s)	174, 308, 428, 518, 775, 851
Alw21I	GWGCWC	2 cut(s)	777, 873
Alw26I	GTCTC	2 cut(s)	325, 713
AlwI	GGATC	6 cut(s)	307, 497, 510, 560, 870, 875
Aor13HI	TCCGGA	1 cut(s)	499
AoxI	GGCC	1 cut(s)	570
Asp718I	GGTACC	1 cut(s)	607
AspLEI	GCGC	1 cut(s)	528
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	3 cut(s)	30, 157, 344
BaeI	ACNNNNGTAYC	4 cut(s)	473, 473, 506, 506
BamHI	GGATCC	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	607
BanII	GRGCYC	2 cut(s)	77, 777
Bbv12I	GWGCWC	2 cut(s)	777, 873
BccI	CCATC	3 cut(s)	35, 221, 619
BciVI	GTATCC	4 cut(s)	501, 521, 556, 557
BclI	TGATCA	1 cut(s)	670
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	2 cut(s)	325, 713
BfaI	CTAG	3 cut(s)	14, 252, 791
BfuI	GTATCC	4 cut(s)	501, 521, 556, 557
BglI	GCCNNNNNGGC	1 cut(s)	578
BisI	GCNGC	1 cut(s)	629
BlsI	GCNGC	1 cut(s)	630
Bme1390I	CCNGG	1 cut(s)	550
BmgBI	CACGTC	1 cut(s)	33
BmiI	GGNNCC	2 cut(s)	504, 609
BmrFI	CCNGG	1 cut(s)	550
BmsI	GCATC	3 cut(s)	273, 466, 673
BpuEI	CTTGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	550
Bsa29I	ATCGAT	1 cut(s)	555
BsaAI	YACGTR	1 cut(s)	538
BsaBI	GATNNNNATC	1 cut(s)	669
BsaWI	WCCGGW	1 cut(s)	499
BsaXI	ACNNNNNCTCC	2 cut(s)	723, 753
Bsc4I	CCNNNNNNNGG	2 cut(s)	549, 796
Bse1I	ACTGG	1 cut(s)	413
Bse3DI	GCAATG	1 cut(s)	645
Bse8I	GATNNNNATC	1 cut(s)	669
BseAI	TCCGGA	1 cut(s)	499
BseCI	ATCGAT	1 cut(s)	555
BseGI	GGATG	1 cut(s)	457
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	2 cut(s)	549, 796
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	4 cut(s)	62, 336, 843, 886
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	2 cut(s)	43, 193
Bsh1236I	CGCG	3 cut(s)	508, 526, 528
BshFI	GGCC	1 cut(s)	572
BshNI	GGYRCC	1 cut(s)	607
BshVI	ATCGAT	1 cut(s)	555
BsiHKAI	GWGCWC	2 cut(s)	777, 873
BsiSI	CCGG	2 cut(s)	500, 550
BsiWI	CGTACG	1 cut(s)	534
BslI	CCNNNNNNNGG	2 cut(s)	549, 796
BsmAI	GTCTC	2 cut(s)	325, 713
BsnI	GGCC	1 cut(s)	572
Bsp1286I	GDGCHC	3 cut(s)	77, 777, 873
Bsp13I	TCCGGA	1 cut(s)	499
Bsp143I	GATC	6 cut(s)	299, 502, 552, 670, 875, 880
BspACI	CCGC	4 cut(s)	348, 506, 524, 628
BspANI	GGCC	1 cut(s)	572
BspCNI	CTCAG	4 cut(s)	63, 335, 844, 885
BspDI	ATCGAT	1 cut(s)	555
BspEI	TCCGGA	1 cut(s)	499
BspFNI	CGCG	3 cut(s)	508, 526, 528
BspLI	GGNNCC	2 cut(s)	504, 609
BspPI	GGATC	6 cut(s)	307, 497, 510, 560, 870, 875
BspT107I	GGYRCC	1 cut(s)	607
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	1 cut(s)	413
BssMI	GATC	6 cut(s)	299, 502, 552, 670, 875, 880
BstBAI	YACGTR	1 cut(s)	538
BstC8I	GCNNGC	1 cut(s)	593
BstDEI	CTNAG	5 cut(s)	71, 322, 384, 852, 872
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	3 cut(s)	508, 526, 528
BstHHI	GCGC	1 cut(s)	528
BstKTI	GATC	6 cut(s)	302, 505, 555, 673, 878, 883
BstMAI	GTCTC	2 cut(s)	325, 713
BstMBI	GATC	6 cut(s)	299, 502, 552, 670, 875, 880
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 578
BstNSI	RCATGY	1 cut(s)	595
BstSCI	CCNGG	1 cut(s)	548
BstSNI	TACGTA	1 cut(s)	538
BstUI	CGCG	3 cut(s)	508, 526, 528
BstX2I	RGATCY	3 cut(s)	299, 502, 875
BstXI	CCANNNNNNTGG	1 cut(s)	246
BstYI	RGATCY	3 cut(s)	299, 502, 875
Bsu15I	ATCGAT	1 cut(s)	555
BsuI	GTATCC	4 cut(s)	501, 521, 556, 557
BsuRI	GGCC	1 cut(s)	572
BsuTUI	ATCGAT	1 cut(s)	555
BtrI	CACGTC	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	593
CfoI	GCGC	1 cut(s)	528
ClaI	ATCGAT	1 cut(s)	555
Csp6I	GTAC	3 cut(s)	535, 539, 608
CspCI	CAANNNNNGTGG	2 cut(s)	683, 718
CviAII	CATG	2 cut(s)	592, 728
CviQI	GTAC	3 cut(s)	535, 539, 608
DdeI	CTNAG	5 cut(s)	71, 322, 384, 852, 872
DpnI	GATC	6 cut(s)	301, 504, 554, 672, 877, 882
DpnII	GATC	6 cut(s)	299, 502, 552, 670, 875, 880
Ecl136II	GAGCTC	1 cut(s)	775
Eco105I	TACGTA	1 cut(s)	538
Eco24I	GRGCYC	2 cut(s)	77, 777
Eco53kI	GAGCTC	1 cut(s)	775
EcoICRI	GAGCTC	1 cut(s)	775
EcoT38I	GRGCYC	2 cut(s)	77, 777
FaeI	CATG	2 cut(s)	595, 731
FaiI	YATR	6 cut(s)	273, 401, 583, 593, 600, 729
FatI	CATG	2 cut(s)	591, 727
FbaI	TGATCA	1 cut(s)	670
Fnu4HI	GCNGC	1 cut(s)	629
FokI	GGATG	1 cut(s)	444
FriOI	GRGCYC	2 cut(s)	77, 777
Fsp4HI	GCNGC	1 cut(s)	629
FspBI	CTAG	3 cut(s)	14, 252, 791
GlaI	GCGC	1 cut(s)	527
GluI	GCNGC	1 cut(s)	629
HaeIII	GGCC	1 cut(s)	572
HapII	CCGG	2 cut(s)	500, 550
HhaI	GCGC	1 cut(s)	528
Hin1II	CATG	2 cut(s)	595, 731
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HindIII	AAGCTT	1 cut(s)	516
HinfI	GANTC	3 cut(s)	67, 153, 362
HpaII	CCGG	2 cut(s)	500, 550
HphI	GGTGA	3 cut(s)	30, 157, 344
Hpy188I	TCNGA	9 cut(s)	72, 228, 325, 367, 622, 664, 708, 875, 880
Hpy188III	TCNNGA	3 cut(s)	64, 280, 500
HpyAV	CCTTC	7 cut(s)	70, 155, 277, 429, 708, 751, 894
HpyCH4IV	ACGT	3 cut(s)	32, 488, 537
HpyCH4V	TGCA	3 cut(s)	264, 591, 747
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 578
HpyF3I	CTNAG	5 cut(s)	71, 322, 384, 852, 872
HpySE526I	ACGT	3 cut(s)	32, 488, 537
Hsp92II	CATG	2 cut(s)	595, 731
HspAI	GCGC	1 cut(s)	526
Kpn2I	TCCGGA	1 cut(s)	499
KpnI	GGTACC	1 cut(s)	611
Ksp22I	TGATCA	1 cut(s)	670
Kzo9I	GATC	6 cut(s)	299, 502, 552, 670, 875, 880
LmnI	GCTCC	1 cut(s)	780
LweI	GCATC	3 cut(s)	273, 466, 673
MaeI	CTAG	3 cut(s)	14, 252, 791
MaeII	ACGT	3 cut(s)	32, 488, 537
MalI	GATC	6 cut(s)	301, 504, 554, 672, 877, 882
MboI	GATC	6 cut(s)	299, 502, 552, 670, 875, 880
MboII	GAAGA	3 cut(s)	78, 235, 259
MflI	RGATCY	3 cut(s)	299, 502, 875
MhlI	GDGCHC	3 cut(s)	77, 777, 873
MluCI	AATT	3 cut(s)	123, 440, 857
MlyI	GAGTC	1 cut(s)	371
MroI	TCCGGA	1 cut(s)	499
MslI	CAYNNNNRTG	1 cut(s)	586
MspI	CCGG	2 cut(s)	500, 550
MspR9I	CCNGG	1 cut(s)	550
MvnI	CGCG	3 cut(s)	508, 526, 528
MwoI	GCNNNNNNNGC	2 cut(s)	293, 578
NciI	CCSGG	1 cut(s)	550
NdeII	GATC	6 cut(s)	299, 502, 552, 670, 875, 880
NlaIII	CATG	2 cut(s)	595, 731
NlaIV	GGNNCC	2 cut(s)	504, 609
NspI	RCATGY	1 cut(s)	595
PaeI	GCATGC	1 cut(s)	595
PcsI	WCGNNNNNNNCGW	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	67, 153
Pfl23II	CGTACG	1 cut(s)	534
PfoI	TCCNGGA	1 cut(s)	548
PkrI	GCNGC	1 cut(s)	630
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
Ppu21I	YACGTR	1 cut(s)	538
Psp124BI	GAGCTC	1 cut(s)	777
PspLI	CGTACG	1 cut(s)	534
PspN4I	GGNNCC	2 cut(s)	504, 609
PsuI	RGATCY	3 cut(s)	299, 502, 875
RsaI	GTAC	3 cut(s)	536, 540, 609
RsaNI	GTAC	3 cut(s)	535, 539, 608
RseI	CAYNNNNRTG	1 cut(s)	586
SacI	GAGCTC	1 cut(s)	777
SatI	GCNGC	1 cut(s)	629
Sau3AI	GATC	6 cut(s)	299, 502, 552, 670, 875, 880
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	1 cut(s)	550
SduI	GDGCHC	3 cut(s)	77, 777, 873
SfaNI	GCATC	3 cut(s)	273, 466, 673
SmiMI	CAYNNNNRTG	1 cut(s)	586
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
SnaBI	TACGTA	1 cut(s)	538
SphI	GCATGC	1 cut(s)	595
Sse9I	AATT	3 cut(s)	123, 440, 857
SsiI	CCGC	4 cut(s)	348, 506, 524, 628
SspMI	CTAG	3 cut(s)	14, 252, 791
SstI	GAGCTC	1 cut(s)	777
StyD4I	CCNGG	1 cut(s)	548
TaiI	ACGT	3 cut(s)	35, 491, 540
TaqI	TCGA	1 cut(s)	555
TasI	AATT	3 cut(s)	123, 440, 857
TauI	GCSGC	1 cut(s)	631
TfiI	GAWTC	2 cut(s)	67, 153
TscAI	CASTG	1 cut(s)	420
TspDTI	ATGAA	2 cut(s)	354, 587
TspGWI	ACGGA	2 cut(s)	499, 576
TspRI	CASTG	1 cut(s)	420
XceI	RCATGY	1 cut(s)	595
XspI	CTAG	3 cut(s)	14, 252, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.