Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008584

Physical Location & Seq

Genomic Coordinates Forward (+)

43885848 .. 43888573

Gene Structure 2726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G537200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGCTTCTTTCTCTTGTGCAAACCACCTTAACGTCATCGCCTTTCCAATCCCCAAGCTTCAAGATTCTTCATCCCGCCACTGTGCTGCCCAAAACTCTCTTTCTTGGTCTTGGAATTGAACCCACAAATGCCCTCAAAAGATTACTCTTTTTTAGCCAAAGATCACATTATACTAAATCCAGAAACCCCAGGCTCACAATCCATGCTTCTTTGCTTGAAGCTCCAGTCCTTTGGGCTGGTAGGCTTTGCATCTTCTACGCACTCTTGAAGACTGGTTTAGCTGGATCTCAAGCTAACCCACTTGTCTCAGATTTGGGAAGCACTGAAGAAGGTGATGGGGTTGGGATTGAGTCTGCTGATTTGGGGTTTTCTAGGTGGTTGAACAGCATACAGGGGAAACCAGTGAAAGAAGCAGCTGATAGAAGGAAATTAGTGAGCAAATGGCATCCTACCACAAAGGGTACACTCAGAAGGAACTACAGGGTACCCTCTAAATCTGAAGGGCGGCGTGCTCTGAAAGCCATTGCCTCCTTATTGTCAGAGGACGATCACTTTGTAGATGCCACCTCCCACAAGGGTTGCCAGATTAGGAGGGAGAGCGCTCATGGAGAAACTGTCTGTTGCAACAACGTAAGGGCTCTGTTCGATGAGCTCCCAACTCCACATCTAGTTGTGGAAATCACTCCTTTTCCTGCTGGTTCTCTTACAGAAACGGATTACACTAAAGCTGAGAAATTAGAGAGGGTCCTAAGGTCTGGTCCTTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

28.15

Weight (kDa)

9.53

Isoelectric Point (pI)

55.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G32930 AT3G32930
fragaria_vesca	FvH4_3g44830
malus_domestica	MD08G1205200.v1.1
prunus_persica	Prupe.1G537200_v2.0.a1
pyrus_communis	pycom08g17740
rosa_chinensis	RchiOBHm_Chr5g0081531
rosa_laevigata	RLG00000036945
rosa_multiflora	Rmu_co8505191.1_g000002 Rmu_sc0004657.1_g000055 Rmu_sc0007702.1_g000001 Rmu_sc0037529.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002020
rosa_rugosa	Rorug05G0411800 Rorug05G0477000 Rorug05G0477100
rosa_samantha	Rh5AG528400 Rh5BG553200 Rh5CG576000 Rh5DG563300 Rh7AG444400
rosa_wichuraiana	Rw5G049160 Rw7G036920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	484
AciI	CCGC	2 cut(s)	75, 505
AclWI	GGATC	1 cut(s)	292
AcuI	CTGAAG	2 cut(s)	345, 519
AfaI	GTAC	2 cut(s)	463, 486
AfeI	AGCGCT	1 cut(s)	601
AgsI	TTSAA	5 cut(s)	61, 119, 218, 268, 382
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	7 cut(s)	57, 221, 281, 293, 416, 652, 728
AluI	AGCT	7 cut(s)	57, 221, 281, 293, 416, 652, 728
Alw21I	GWGCWC	2 cut(s)	514, 654
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	1 cut(s)	292
Aor51HI	AGCGCT	1 cut(s)	601
ApeKI	GCWGC	2 cut(s)	85, 413
ArsI	GACNNNNNNTTYG	2 cut(s)	536, 568
Asp718I	GGTACC	1 cut(s)	484
AspLEI	GCGC	1 cut(s)	602
AspS9I	GGNCC	2 cut(s)	745, 758
AsuHPI	GGTGA	1 cut(s)	344
AvaII	GGWCC	2 cut(s)	745, 758
AxyI	CCTNAGG	1 cut(s)	749
BanI	GGYRCC	1 cut(s)	484
BanII	GRGCYC	2 cut(s)	640, 654
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	2 cut(s)	514, 654
BbvI	GCAGC	2 cut(s)	72, 425
BccI	CCATC	1 cut(s)	329
BciT130I	CCWGG	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	2 cut(s)	372, 668
BfmI	CTRYAG	1 cut(s)	478
BfoI	RGCGCY	1 cut(s)	603
BisI	GCNGC	3 cut(s)	86, 414, 506
BlsI	GCNGC	3 cut(s)	87, 415, 507
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	2 cut(s)	745, 758
BmgT120I	GGNCC	2 cut(s)	745, 758
BmiI	GGNNCC	2 cut(s)	486, 746
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	3 cut(s)	258, 454, 550
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bse1I	ACTGG	3 cut(s)	224, 277, 401
Bse21I	CCTNAGG	1 cut(s)	749
Bse3DI	GCAATG	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	2 cut(s)	70, 445
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	3 cut(s)	321, 481, 720
BseNI	ACTGG	3 cut(s)	224, 277, 401
BseXI	GCAGC	2 cut(s)	72, 425
BshNI	GGYRCC	1 cut(s)	484
BsiHKAI	GWGCWC	2 cut(s)	514, 654
BsmAI	GTCTC	1 cut(s)	310
Bsp1286I	GDGCHC	3 cut(s)	514, 640, 654
Bsp143I	GATC	3 cut(s)	161, 284, 547
BspACI	CCGC	2 cut(s)	75, 505
BspCNI	CTCAG	3 cut(s)	320, 480, 721
BspLI	GGNNCC	2 cut(s)	486, 746
BspPI	GGATC	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	522
BsrI	ACTGG	3 cut(s)	224, 277, 401
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	3 cut(s)	161, 284, 547
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	82, 616
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	4 cut(s)	307, 467, 729, 749
BstF5I	GGATG	2 cut(s)	70, 445
BstH2I	RGCGCY	1 cut(s)	603
BstHHI	GCGC	1 cut(s)	602
BstKTI	GATC	3 cut(s)	164, 287, 550
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	3 cut(s)	161, 284, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstNI	CCWGG	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	478
BstV1I	GCAGC	2 cut(s)	72, 425
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	284
BstXI	CCANNNNNNTGG	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	284
Bsu36I	CCTNAGG	1 cut(s)	749
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	70, 445
BtsIMutI	CAGTG	3 cut(s)	78, 321, 408
Cac8I	GCNNGC	1 cut(s)	510
CfoI	GCGC	1 cut(s)	602
Cfr13I	GGNCC	2 cut(s)	745, 758
Csp6I	GTAC	2 cut(s)	462, 485
CspCI	CAANNNNNGTGG	2 cut(s)	560, 595
CviAII	CATG	2 cut(s)	203, 605
CviQI	GTAC	2 cut(s)	462, 485
DdeI	CTNAG	4 cut(s)	307, 467, 729, 749
DpnI	GATC	3 cut(s)	163, 286, 549
DpnII	GATC	3 cut(s)	161, 284, 547
Ecl136II	GAGCTC	1 cut(s)	652
Eco24I	GRGCYC	2 cut(s)	640, 654
Eco47I	GGWCC	2 cut(s)	745, 758
Eco47III	AGCGCT	1 cut(s)	601
Eco53kI	GAGCTC	1 cut(s)	652
Eco57I	CTGAAG	2 cut(s)	345, 519
Eco81I	CCTNAGG	1 cut(s)	749
EcoICRI	GAGCTC	1 cut(s)	652
EcoO109I	RGGNCCY	1 cut(s)	745
EcoRII	CCWGG	1 cut(s)	188
EcoT38I	GRGCYC	2 cut(s)	640, 654
FaeI	CATG	2 cut(s)	206, 608
FaiI	YATR	4 cut(s)	171, 204, 389, 606
FatI	CATG	2 cut(s)	202, 604
FauI	CCCGC	1 cut(s)	82
Fnu4HI	GCNGC	3 cut(s)	86, 414, 506
FokI	GGATG	2 cut(s)	57, 432
FriOI	GRGCYC	2 cut(s)	640, 654
Fsp4HI	GCNGC	3 cut(s)	86, 414, 506
FspBI	CTAG	2 cut(s)	372, 668
GlaI	GCGC	1 cut(s)	601
GluI	GCNGC	3 cut(s)	86, 414, 506
GsuI	CTGGAG	1 cut(s)	207
HaeII	RGCGCY	1 cut(s)	603
HhaI	GCGC	1 cut(s)	602
Hin1II	CATG	2 cut(s)	206, 608
Hin6I	GCGC	1 cut(s)	600
HinP1I	GCGC	1 cut(s)	600
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	2 cut(s)	64, 350
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	5 cut(s)	310, 470, 499, 516, 541
Hpy188III	TCNNGA	3 cut(s)	61, 180, 265
Hpy8I	GTNNAC	1 cut(s)	464
HpyAV	CCTTC	5 cut(s)	323, 417, 465, 494, 771
HpyCH4III	ACNGT	2 cut(s)	82, 616
HpyCH4IV	ACGT	2 cut(s)	32, 630
HpyCH4V	TGCA	3 cut(s)	19, 249, 624
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	4 cut(s)	307, 467, 729, 749
HpySE526I	ACGT	2 cut(s)	32, 630
Hsp92II	CATG	2 cut(s)	206, 608
HspAI	GCGC	1 cut(s)	600
KpnI	GGTACC	1 cut(s)	488
Kzo9I	GATC	3 cut(s)	161, 284, 547
LmnI	GCTCC	2 cut(s)	226, 657
Lsp1109I	GCAGC	2 cut(s)	72, 425
LweI	GCATC	3 cut(s)	258, 454, 550
MaeI	CTAG	2 cut(s)	372, 668
MaeII	ACGT	2 cut(s)	32, 630
MalI	GATC	3 cut(s)	163, 286, 549
MboI	GATC	3 cut(s)	161, 284, 547
MboII	GAAGA	4 cut(s)	59, 244, 280, 338
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	3 cut(s)	514, 640, 654
MluCI	AATT	3 cut(s)	114, 428, 734
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	7 cut(s)	143, 499, 535, 538, 577, 585, 735
MseI	TTAA	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	518
NdeII	GATC	3 cut(s)	161, 284, 547
NlaIII	CATG	2 cut(s)	206, 608
NlaIV	GGNNCC	2 cut(s)	486, 746
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	3 cut(s)	87, 415, 507
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PpuMI	RGGWCCY	1 cut(s)	745
Psp124BI	GAGCTC	1 cut(s)	654
Psp5II	RGGWCCY	1 cut(s)	745
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	486, 746
PspPI	GGNCC	2 cut(s)	745, 758
PspPPI	RGGWCCY	1 cut(s)	745
PsuI	RGATCY	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	2 cut(s)	463, 486
RsaNI	GTAC	2 cut(s)	462, 485
SacI	GAGCTC	1 cut(s)	654
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	3 cut(s)	86, 414, 506
Sau3AI	GATC	3 cut(s)	161, 284, 547
Sau96I	GGNCC	2 cut(s)	745, 758
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	3 cut(s)	514, 640, 654
SfaNI	GCATC	3 cut(s)	258, 454, 550
SfcI	CTRYAG	1 cut(s)	478
SinI	GGWCC	2 cut(s)	745, 758
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
Sse9I	AATT	3 cut(s)	114, 428, 734
SsiI	CCGC	2 cut(s)	75, 505
SspMI	CTAG	2 cut(s)	372, 668
SstI	GAGCTC	1 cut(s)	654
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	82, 616
TaiI	ACGT	2 cut(s)	35, 633
TaqI	TCGA	1 cut(s)	645
TasI	AATT	3 cut(s)	114, 428, 734
TauI	GCSGC	1 cut(s)	508
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	3 cut(s)	85, 328, 408
TseI	GCWGC	2 cut(s)	85, 413
TspDTI	ATGAA	1 cut(s)	59
TspGWI	ACGGA	1 cut(s)	728
TspRI	CASTG	3 cut(s)	85, 328, 408
VpaK11BI	GGWCC	2 cut(s)	745, 758
XspI	CTAG	2 cut(s)	372, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.