Rorug05G0477000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008584
Physical Location & Seq
Forward (+)
65643213 .. 65643545
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0477000.1

Sequence Viewer

Length: 333 bp
ATGTGGAAAGTGTGCCATAATATTCTTCCATCCATGGAGAGACTCGGTTCTAAAAGGGTGGTGTTGGAGTCACAGGTATGTGTTTTGTGTGATAGTGCATTGGAGACTACATTACATATTACTCGTGATTGCCCTTTTACAAGACAGATTCTCCAAAGTAGAGGAGTGTTGGCCCAAGTATGTTTAAGTTCTTATGCCATATCTTTTGATTTGTTGCATTGGTTAAGTTTATGTGTCCATGACCTTTCATTACTGAACTTGGGGGAATTTATCTACCTTTTGTGGGGCATTTGGAAGGAGAGAAATAGCAGAGTTTGGGACAATAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.82

Weight (kDa)

8.28

Isoelectric Point (pI)

65.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 1 - 50 2.7e-07 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 283
Alw26I GTCTC 2 cut(s) 34, 98
AoxI GGCC 1 cut(s) 171
ApoI RAATTY 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 172
BauI CACGAG 1 cut(s) 123
BccI CCATC 1 cut(s) 37
BcoDI GTCTC 2 cut(s) 34, 98
BmgT120I GGNCC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 177
BshFI GGCC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 2 cut(s) 34, 98
BsnI GGCC 1 cut(s) 173
Bsp19I CCATGG 1 cut(s) 33
BspANI GGCC 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 33
BssSI CACGAG 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 123
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 29
BstMAI GTCTC 2 cut(s) 34, 98
BsuRI GGCC 1 cut(s) 173
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 172
CviAII CATG 2 cut(s) 34, 239
CviJI RGCY 1 cut(s) 173
CviKI_1 RGCY 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 2 cut(s) 37, 242
FaiI YATR 9 cut(s) 18, 35, 79, 117, 181, 195, 200, 232, 240
FatI CATG 2 cut(s) 33, 238
FokI GGATG 1 cut(s) 16
HaeIII GGCC 1 cut(s) 173
Hin1II CATG 2 cut(s) 37, 242
HinfI GANTC 3 cut(s) 42, 68, 148
Hpy188III TCNNGA 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 289
HpyCH4V TGCA 2 cut(s) 98, 217
Hsp92II CATG 2 cut(s) 37, 242
LpnPI CCDG 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 69
MboII GAAGA 1 cut(s) 17
MluCI AATT 1 cut(s) 266
MlyI GAGTC 2 cut(s) 36, 77
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 1 cut(s) 155
MseI TTAA 2 cut(s) 185, 224
MslI CAYNNNNRTG 1 cut(s) 76
NcoI CCATGG 1 cut(s) 33
NlaIII CATG 2 cut(s) 37, 242
NmuCI GTSAC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 148
PleI GAGTC 2 cut(s) 36, 76
PpsI GAGTC 2 cut(s) 36, 76
PspPI GGNCC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 76
SaqAI TTAA 2 cut(s) 185, 224
Sau96I GGNCC 1 cut(s) 172
SchI GAGTC 2 cut(s) 36, 77
SetI ASST 4 cut(s) 78, 246, 279, 332
SgeI CNNG 9 cut(s) 46, 56, 86, 135, 137, 153, 188, 251, 271
SmiMI CAYNNNNRTG 1 cut(s) 76
Sse9I AATT 1 cut(s) 266
SspI AATATT 1 cut(s) 22
StyI CCWWGG 1 cut(s) 33
TasI AATT 1 cut(s) 266
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 2 cut(s) 185, 224
Tru9I TTAA 2 cut(s) 185, 224
TseFI GTSAC 1 cut(s) 69
Tsp45I GTSAC 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 237
XapI RAATTY 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.