Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008584

Physical Location & Seq

Genomic Coordinates Forward (+)

17888719 .. 17891303

Gene Structure 2585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAGAGATTTTGGAGTAATAAATAGGGGTATGCTATCCACACACCTCATTCTACTTCTCACACGCTCTTTGATAATTTATGTGTGTGAGAAGTCACATTCCCTAATAAATATAGGGGGTCGGTACGACAACGTTTTCCCGCATTACACATTGCCCAAAGTCCCCAAACAACTATTGACCTCATCCTCCGGCACTCTCATCAATCTCATCACTGTATATTTCTGTAATCGAAGAAACATGCTTCTTTCTCTAGTCCAAACCACCTTAGCATCATCCCCTTGTTTCCACTCCTCACACTTTCAGATTCTCAACAATCCCACTGCTGCGCCGCCCAAATCTCCCTTTCTTGGTCTTGGATTTGAACCCATAACAAATCCCCTCAAAAGCTCGCATTCTTACACAAACCCCAGAAACCCCAAGCTCAGAATCCATGCTTCTCTGCTTGAAGCTCCGGTCCTCTGGGCTGGCAGGCTCTGCATCTTCTATGCTCTCTTGAAGACTGGTTTGGCTGGATCTCCAGCTAGTCCACTTCTGTCAGATTTGGGAAGAGTTGAAGGTGAAGAAGGTGATGGGGTTGTTAGTGGGTCTGTTGATTTGGGGTTCTCTAAGTGGTTGAACAGCATTCAAGGGAAACCAGCAAAAGAAGCTGCTGATAAAAGGAAATTAGTAAGCAAATGGCATCCTACAACAAAGGGCACACTCAGAAGGAACTACAGGGTACCATCTAAATCTGAAGGGCGTCGTCTTCTGAAGGGTATTGCTTCCTTACTGTCAGACGACGATCACTTTGTAGATGCAACCTCCCACAAGGGTTGTCAGATCAGGAGGGAGACCGCTCATGGAGAAAGTGTCTGTTGCAACAATGTGAGGGCTCTGTTTGATGAGCTTCCGACTCCGCACCTAGTTGTGGAGATCACTCCTTTTCCGGCTAGCTCTCTTACAGAAAATGATTACACTAAAGCCGAGAAATTAGAGAGGGTGCTAAGATCAGGTCCTCATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

335

Amino Acids

36.84

Weight (kDa)

9.51

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G32930 AT3G32930
fragaria_vesca	FvH4_3g44830
malus_domestica	MD08G1205200.v1.1
prunus_persica	Prupe.1G537200_v2.0.a1
pyrus_communis	pycom08g17740
rosa_chinensis	RchiOBHm_Chr5g0081531
rosa_laevigata	RLG00000036945
rosa_multiflora	Rmu_co8505191.1_g000002 Rmu_sc0004657.1_g000055 Rmu_sc0007702.1_g000001 Rmu_sc0037529.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002020
rosa_rugosa	Rorug05G0411800 Rorug05G0477000 Rorug05G0477100
rosa_samantha	Rh5AG528400 Rh5BG553200 Rh5CG576000 Rh5DG563300 Rh7AG444400
rosa_wichuraiana	Rw5G049160 Rw7G036920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	718
AccB1I	GGYRCC	1 cut(s)	718
AccBSI	CCGCTC	1 cut(s)	836
AciI	CCGC	4 cut(s)	140, 329, 834, 896
AclI	AACGTT	1 cut(s)	132
AclWI	GGATC	1 cut(s)	520
AcuI	CTGAAG	2 cut(s)	753, 770
AcyI	GRCGYC	1 cut(s)	739
AfaI	GTAC	2 cut(s)	125, 720
AfiI	CCNNNNNNNGG	2 cut(s)	347, 907
AgsI	TTSAA	6 cut(s)	362, 446, 496, 554, 616, 626
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AluBI	AGCT	7 cut(s)	387, 421, 449, 521, 647, 886, 933
AluI	AGCT	7 cut(s)	387, 421, 449, 521, 647, 886, 933
Alw26I	GTCTC	1 cut(s)	824
AlwI	GGATC	1 cut(s)	520
AlwNI	CAGNNNCTG	1 cut(s)	474
ApeKI	GCWGC	2 cut(s)	323, 647
ArsI	GACNNNNNNTTYG	2 cut(s)	770, 802
Asp718I	GGTACC	1 cut(s)	718
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	2 cut(s)	454, 992
AsuHPI	GGTGA	2 cut(s)	569, 578
AsuNHI	GCTAGC	1 cut(s)	929
AvaII	GGWCC	2 cut(s)	454, 992
BaeGI	GKGCMC	1 cut(s)	698
BanI	GGYRCC	1 cut(s)	718
BanII	GRGCYC	1 cut(s)	874
BbsI	GAAGAC	2 cut(s)	503, 737
BbvI	GCAGC	2 cut(s)	310, 634
BccI	CCATC	2 cut(s)	563, 730
BcoDI	GTCTC	1 cut(s)	824
BfaI	CTAG	4 cut(s)	251, 522, 902, 930
BfmI	CTRYAG	1 cut(s)	712
BisI	GCNGC	3 cut(s)	324, 329, 648
BlsI	GCNGC	3 cut(s)	325, 330, 649
Bme18I	GGWCC	2 cut(s)	454, 992
BmgT120I	GGNCC	2 cut(s)	454, 992
BmiI	GGNNCC	1 cut(s)	720
BmsI	GCATC	4 cut(s)	278, 486, 688, 784
BmtI	GCTAGC	1 cut(s)	933
BpiI	GAAGAC	2 cut(s)	503, 737
BpmI	CTGGAG	1 cut(s)	501
Bpu10I	CCTNAGC	1 cut(s)	265
BsaHI	GRCGYC	1 cut(s)	739
BsaI	GGTCTC	1 cut(s)	824
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	834, 864
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 907
Bse1I	ACTGG	1 cut(s)	505
Bse3DI	GCAATG	1 cut(s)	149
BseGI	GGATG	3 cut(s)	182, 272, 679
BseLI	CCNNNNNNNGG	2 cut(s)	347, 907
BseMI	GCAATG	1 cut(s)	149
BseMII	CTCAG	2 cut(s)	436, 715
BseNI	ACTGG	1 cut(s)	505
BseRI	GAGGAG	1 cut(s)	280
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	2 cut(s)	310, 634
BshNI	GGYRCC	1 cut(s)	718
BsiSI	CCGG	3 cut(s)	189, 452, 926
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	347, 907
BsmAI	GTCTC	1 cut(s)	824
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	2 cut(s)	391, 621
Bso31I	GGTCTC	1 cut(s)	824
Bsp1286I	GDGCHC	2 cut(s)	698, 874
Bsp143I	GATC	5 cut(s)	512, 781, 819, 912, 986
BspACI	CCGC	4 cut(s)	140, 329, 834, 896
BspCNI	CTCAG	2 cut(s)	435, 714
BspLI	GGNNCC	1 cut(s)	720
BspOI	GCTAGC	1 cut(s)	933
BspPI	GGATC	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	718
BspTNI	GGTCTC	1 cut(s)	824
BsrBI	CCGCTC	1 cut(s)	836
BsrDI	GCAATG	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	505
BssMI	GATC	5 cut(s)	512, 781, 819, 912, 986
BssNI	GRCGYC	1 cut(s)	739
Bst4CI	ACNGT	2 cut(s)	214, 771
Bst6I	CTCTTC	1 cut(s)	541
BstACI	GRCGYC	1 cut(s)	739
BstAPI	GCANNNNNTGC	1 cut(s)	474
BstC8I	GCNNGC	4 cut(s)	389, 466, 470, 931
BstDEI	CTNAG	5 cut(s)	265, 422, 606, 701, 983
BstF5I	GGATG	3 cut(s)	182, 272, 679
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	5 cut(s)	515, 784, 822, 915, 989
BstMAI	GTCTC	1 cut(s)	824
BstMBI	GATC	5 cut(s)	512, 781, 819, 912, 986
BstMWI	GCNNNNNNNGC	2 cut(s)	474, 644
BstNSI	RCATGY	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	712
BstSLI	GKGCMC	1 cut(s)	698
BstV1I	GCAGC	2 cut(s)	310, 634
BstV2I	GAAGAC	2 cut(s)	503, 737
BstX2I	RGATCY	1 cut(s)	512
BstYI	RGATCY	1 cut(s)	512
BtsCI	GGATG	3 cut(s)	182, 272, 679
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	2 cut(s)	210, 318
Cac8I	GCNNGC	4 cut(s)	389, 466, 470, 931
CaiI	CAGNNNCTG	1 cut(s)	474
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	2 cut(s)	454, 992
CseI	GACGC	1 cut(s)	728
Csp6I	GTAC	2 cut(s)	124, 719
CspCI	CAANNNNNGTGG	2 cut(s)	794, 829
CviAII	CATG	4 cut(s)	238, 431, 839, 998
CviQI	GTAC	2 cut(s)	124, 719
DdeI	CTNAG	5 cut(s)	265, 422, 606, 701, 983
DpnI	GATC	5 cut(s)	514, 783, 821, 914, 988
DpnII	GATC	5 cut(s)	512, 781, 819, 912, 986
Eam1104I	CTCTTC	1 cut(s)	541
EarI	CTCTTC	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	874
Eco31I	GGTCTC	1 cut(s)	824
Eco47I	GGWCC	2 cut(s)	454, 992
Eco57I	CTGAAG	2 cut(s)	753, 770
EcoO109I	RGGNCCY	1 cut(s)	992
EcoT38I	GRGCYC	1 cut(s)	874
FaeI	CATG	4 cut(s)	241, 434, 842, 1001
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	4 cut(s)	237, 430, 838, 997
FauI	CCCGC	1 cut(s)	147
Fnu4HI	GCNGC	3 cut(s)	324, 329, 648
FokI	GGATG	3 cut(s)	169, 259, 666
FriOI	GRGCYC	1 cut(s)	874
Fsp4HI	GCNGC	3 cut(s)	324, 329, 648
FspBI	CTAG	4 cut(s)	251, 522, 902, 930
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	3 cut(s)	324, 329, 648
GsuI	CTGGAG	1 cut(s)	501
HapII	CCGG	3 cut(s)	189, 452, 926
HgaI	GACGC	1 cut(s)	728
HhaI	GCGC	1 cut(s)	328
Hin1I	GRCGYC	1 cut(s)	739
Hin1II	CATG	4 cut(s)	241, 434, 842, 1001
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	3 cut(s)	304, 426, 892
HpaII	CCGG	3 cut(s)	189, 452, 926
HphI	GGTGA	2 cut(s)	569, 578
Hpy166II	GTNNAC	1 cut(s)	527
Hpy188I	TCNGA	9 cut(s)	303, 425, 538, 704, 733, 750, 775, 819, 891
Hpy188III	TCNNGA	2 cut(s)	493, 823
Hpy8I	GTNNAC	1 cut(s)	527
Hpy99I	CGWCG	2 cut(s)	744, 782
HpyAV	CCTTC	5 cut(s)	548, 557, 699, 728, 745
HpyCH4III	ACNGT	2 cut(s)	214, 771
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	477, 797, 858
HpyF10VI	GCNNNNNNNGC	2 cut(s)	474, 644
HpyF3I	CTNAG	5 cut(s)	265, 422, 606, 701, 983
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	739
Hsp92II	CATG	4 cut(s)	241, 434, 842, 1001
HspAI	GCGC	1 cut(s)	326
KpnI	GGTACC	1 cut(s)	722
Kzo9I	GATC	5 cut(s)	512, 781, 819, 912, 986
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	2 cut(s)	310, 634
LweI	GCATC	4 cut(s)	278, 486, 688, 784
MaeI	CTAG	4 cut(s)	251, 522, 902, 930
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	5 cut(s)	514, 783, 821, 914, 988
MbiI	CCGCTC	1 cut(s)	836
MboI	GATC	5 cut(s)	512, 781, 819, 912, 986
MboII	GAAGA	6 cut(s)	243, 472, 508, 558, 572, 737
MflI	RGATCY	1 cut(s)	512
MhlI	GDGCHC	2 cut(s)	698, 874
MluCI	AATT	3 cut(s)	75, 662, 968
MlyI	GAGTC	1 cut(s)	886
MmeI	TCCRAC	1 cut(s)	914
MspI	CCGG	3 cut(s)	189, 452, 926
Mva1269I	GAATGC	2 cut(s)	391, 621
MwoI	GCNNNNNNNGC	2 cut(s)	474, 644
NdeII	GATC	5 cut(s)	512, 781, 819, 912, 986
NheI	GCTAGC	1 cut(s)	929
NlaIII	CATG	4 cut(s)	241, 434, 842, 1001
NlaIV	GGNNCC	1 cut(s)	720
NmeAIII	GCCGAG	1 cut(s)	988
NmuCI	GTSAC	1 cut(s)	93
NspI	RCATGY	1 cut(s)	241
PctI	GAATGC	2 cut(s)	391, 621
PfeI	GAWTC	2 cut(s)	304, 426
PkrI	GCNGC	3 cut(s)	325, 330, 649
PleI	GAGTC	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	886
PpuMI	RGGWCCY	1 cut(s)	992
Psp1406I	AACGTT	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	992
PspN4I	GGNNCC	1 cut(s)	720
PspPI	GGNCC	2 cut(s)	454, 992
PspPPI	RGGWCCY	1 cut(s)	992
PstNI	CAGNNNCTG	1 cut(s)	474
PsuI	RGATCY	1 cut(s)	512
RsaI	GTAC	2 cut(s)	125, 720
RsaNI	GTAC	2 cut(s)	124, 719
SatI	GCNGC	3 cut(s)	324, 329, 648
Sau3AI	GATC	5 cut(s)	512, 781, 819, 912, 986
Sau96I	GGNCC	2 cut(s)	454, 992
SchI	GAGTC	1 cut(s)	886
SduI	GDGCHC	2 cut(s)	698, 874
SfaNI	GCATC	4 cut(s)	278, 486, 688, 784
SfcI	CTRYAG	1 cut(s)	712
SinI	GGWCC	2 cut(s)	454, 992
Sse9I	AATT	3 cut(s)	75, 662, 968
SsiI	CCGC	4 cut(s)	140, 329, 834, 896
SspMI	CTAG	4 cut(s)	251, 522, 902, 930
TaaI	ACNGT	2 cut(s)	214, 771
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	229
TasI	AATT	3 cut(s)	75, 662, 968
TauI	GCSGC	1 cut(s)	331
TfiI	GAWTC	2 cut(s)	304, 426
TscAI	CASTG	2 cut(s)	217, 325
TseFI	GTSAC	1 cut(s)	93
TseI	GCWGC	2 cut(s)	323, 647
Tsp45I	GTSAC	1 cut(s)	93
TspRI	CASTG	2 cut(s)	217, 325
VpaK11BI	GGWCC	2 cut(s)	454, 992
XceI	RCATGY	1 cut(s)	241
XspI	CTAG	4 cut(s)	251, 522, 902, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.