Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008584

Physical Location & Seq

Genomic Coordinates Reverse (-)

55991858 .. 55992615

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G036920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCTTCTTTCTCTAGTTCAAAGCACCATCACGTCCTCACCTTTCCAATCCTCCTCAACCTTCAAGATTCTGAGCCCCACTACTTCTTCTAACCTCCCCAAAAGTCTCTTTCTTGGCTTTGGAATTGAACCCACAACAAATGCCCTGCAAAGATTCCTCCTTTTCACCAAAAGCTCACACTCTGCCAAACCCAAAAACCCCTCCTCACTCTCCATCAATGCTTCTCTGATTGAAGCACCAATCTTCCGGGCTGGTAGGCTTTGCATCTTCTATGCTCTCTTGAAGACTGTTCGTGGTGTTGGTATTGAGTCTGATGATTTGGGATTTTCTAAGTGGTTGAACAACATACACGGAAAACCAGTGAAAGACGTAGCTGATAGAAGGAAATTAGTTAGCAAATGGCATCCTACCACAAACGGTACACTCAAAAGGAATTACAGGGTACCATCTAAATCTGAAGGGCGGCGTGTTCTAAAAGCCACTGCCTCTTTATTGTCAGATGATGATCACTTTGTAGATGCCACCTCCCACAAGGGTTGTCAGATTAGAAGGGAGACTGCTCATGGAGAAAGTGTGTGTTGCAACAATGTGAGGGCTCTGTTTGATGAGCTCCAAACTCTACACCTAGTTGTGGAAATCTCTCCATTTCCTGCTGGTTCTCTTACAGAAAAGGATTACACCAAAGCTGAGAAATTAGACAAGGTGCTCAGATCAGATCCTTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

26.7

Weight (kDa)

9.64

Isoelectric Point (pI)

52.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G32930 AT3G32930
fragaria_vesca	FvH4_3g44830
malus_domestica	MD08G1205200.v1.1
prunus_persica	Prupe.1G537200_v2.0.a1
pyrus_communis	pycom08g17740
rosa_chinensis	RchiOBHm_Chr5g0081531
rosa_laevigata	RLG00000036945
rosa_multiflora	Rmu_co8505191.1_g000002 Rmu_sc0004657.1_g000055 Rmu_sc0007702.1_g000001 Rmu_sc0037529.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002020
rosa_rugosa	Rorug05G0411800 Rorug05G0477000 Rorug05G0477100
rosa_samantha	Rh5AG528400 Rh5BG553200 Rh5CG576000 Rh5DG563300 Rh7AG444400
rosa_wichuraiana	Rw5G049160 Rw7G036920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	442
AccB1I	GGYRCC	1 cut(s)	442
AciI	CCGC	1 cut(s)	463
AclWI	GGATC	1 cut(s)	710
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	2 cut(s)	421, 444
AfiI	CCNNNNNNNGG	1 cut(s)	631
AgsI	TTSAA	6 cut(s)	20, 64, 128, 233, 283, 340
AjiI	CACGTC	1 cut(s)	33
AluBI	AGCT	4 cut(s)	174, 374, 610, 686
AluI	AGCT	4 cut(s)	174, 374, 610, 686
Alw21I	GWGCWC	2 cut(s)	612, 708
Alw26I	GTCTC	2 cut(s)	110, 548
AlwI	GGATC	1 cut(s)	710
Asp718I	GGTACC	1 cut(s)	442
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	30, 157
BanI	GGYRCC	1 cut(s)	442
BanII	GRGCYC	3 cut(s)	77, 598, 612
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	2 cut(s)	612, 708
BccI	CCATC	3 cut(s)	35, 221, 454
BclI	TGATCA	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	2 cut(s)	110, 548
BfaI	CTAG	2 cut(s)	14, 626
BisI	GCNGC	1 cut(s)	464
BlsI	GCNGC	1 cut(s)	465
Bme1390I	CCNGG	1 cut(s)	248
BmgBI	CACGTC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	3 cut(s)	273, 412, 508
BpiI	GAAGAC	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	504
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bsc4I	CCNNNNNNNGG	1 cut(s)	631
Bse1I	ACTGG	1 cut(s)	359
Bse8I	GATNNNNATC	1 cut(s)	504
BseGI	GGATG	1 cut(s)	403
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	1 cut(s)	631
BseMII	CTCAG	3 cut(s)	62, 678, 721
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	2 cut(s)	43, 193
BshNI	GGYRCC	1 cut(s)	442
BsiHKAI	GWGCWC	2 cut(s)	612, 708
BsiSI	CCGG	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	631
BsmAI	GTCTC	2 cut(s)	110, 548
Bsp1286I	GDGCHC	4 cut(s)	77, 598, 612, 708
Bsp143I	GATC	3 cut(s)	505, 710, 715
BspACI	CCGC	1 cut(s)	463
BspCNI	CTCAG	3 cut(s)	63, 679, 720
BspLI	GGNNCC	1 cut(s)	444
BspPI	GGATC	1 cut(s)	710
BspT107I	GGYRCC	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	359
BssMI	GATC	3 cut(s)	505, 710, 715
Bst4CI	ACNGT	2 cut(s)	289, 419
BstDEI	CTNAG	4 cut(s)	71, 330, 687, 707
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	3 cut(s)	508, 713, 718
BstMAI	GTCTC	2 cut(s)	110, 548
BstMBI	GATC	3 cut(s)	505, 710, 715
BstSCI	CCNGG	1 cut(s)	246
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
BtrI	CACGTC	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	403
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	366, 480
Csp6I	GTAC	2 cut(s)	420, 443
CspCI	CAANNNNNGTGG	2 cut(s)	518, 553
CviAII	CATG	1 cut(s)	563
CviQI	GTAC	2 cut(s)	420, 443
DdeI	CTNAG	4 cut(s)	71, 330, 687, 707
DpnI	GATC	3 cut(s)	507, 712, 717
DpnII	GATC	3 cut(s)	505, 710, 715
Ecl136II	GAGCTC	1 cut(s)	610
Eco24I	GRGCYC	3 cut(s)	77, 598, 612
Eco53kI	GAGCTC	1 cut(s)	610
Eco57I	CTGAAG	1 cut(s)	477
EcoICRI	GAGCTC	1 cut(s)	610
EcoT38I	GRGCYC	3 cut(s)	77, 598, 612
FaeI	CATG	1 cut(s)	566
FaiI	YATR	3 cut(s)	273, 347, 564
FatI	CATG	1 cut(s)	562
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	1 cut(s)	464
FokI	GGATG	1 cut(s)	390
FriOI	GRGCYC	3 cut(s)	77, 598, 612
Fsp4HI	GCNGC	1 cut(s)	464
FspBI	CTAG	2 cut(s)	14, 626
GluI	GCNGC	1 cut(s)	464
HapII	CCGG	1 cut(s)	247
Hin1II	CATG	1 cut(s)	566
HinfI	GANTC	3 cut(s)	67, 153, 308
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	2 cut(s)	30, 157
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	8 cut(s)	72, 228, 313, 457, 499, 543, 710, 715
Hpy188III	TCNNGA	2 cut(s)	64, 280
Hpy8I	GTNNAC	1 cut(s)	422
HpyAV	CCTTC	5 cut(s)	70, 375, 452, 543, 729
HpyCH4III	ACNGT	2 cut(s)	289, 419
HpyCH4IV	ACGT	2 cut(s)	32, 369
HpyCH4V	TGCA	3 cut(s)	148, 264, 582
HpyF3I	CTNAG	4 cut(s)	71, 330, 687, 707
HpySE526I	ACGT	2 cut(s)	32, 369
Hsp92II	CATG	1 cut(s)	566
KpnI	GGTACC	1 cut(s)	446
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	505, 710, 715
LmnI	GCTCC	1 cut(s)	615
LpnPI	CCDG	7 cut(s)	158, 237, 260, 372, 424, 639, 663
LweI	GCATC	3 cut(s)	273, 412, 508
MaeI	CTAG	2 cut(s)	14, 626
MaeII	ACGT	2 cut(s)	32, 369
MalI	GATC	3 cut(s)	507, 712, 717
MboI	GATC	3 cut(s)	505, 710, 715
MboII	GAAGA	4 cut(s)	78, 235, 259, 295
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	4 cut(s)	77, 598, 612, 708
MluCI	AATT	4 cut(s)	123, 386, 433, 692
MlyI	GAGTC	1 cut(s)	317
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	248
NciI	CCSGG	1 cut(s)	248
NdeII	GATC	3 cut(s)	505, 710, 715
NlaIII	CATG	1 cut(s)	566
NlaIV	GGNNCC	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	67, 153
PkrI	GCNGC	1 cut(s)	465
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Psp124BI	GAGCTC	1 cut(s)	612
PspN4I	GGNNCC	1 cut(s)	444
PsuI	RGATCY	1 cut(s)	715
RsaI	GTAC	2 cut(s)	421, 444
RsaNI	GTAC	2 cut(s)	420, 443
SacI	GAGCTC	1 cut(s)	612
SatI	GCNGC	1 cut(s)	464
Sau3AI	GATC	3 cut(s)	505, 710, 715
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	4 cut(s)	77, 598, 612, 708
SfaNI	GCATC	3 cut(s)	273, 412, 508
Sse9I	AATT	4 cut(s)	123, 386, 433, 692
SsiI	CCGC	1 cut(s)	463
SspMI	CTAG	2 cut(s)	14, 626
SstI	GAGCTC	1 cut(s)	612
StyD4I	CCNGG	1 cut(s)	246
TaaI	ACNGT	2 cut(s)	289, 419
TaiI	ACGT	2 cut(s)	35, 372
TasI	AATT	4 cut(s)	123, 386, 433, 692
TauI	GCSGC	1 cut(s)	466
TfiI	GAWTC	2 cut(s)	67, 153
TscAI	CASTG	2 cut(s)	366, 487
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	2 cut(s)	366, 487
XspI	CTAG	2 cut(s)	14, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.