Rroxscaffold_1G00002020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008584
Physical Location & Seq
Reverse (-)
2440557 .. 2442806
2250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00002020.1

Sequence Viewer

Length: 783 bp
ATGCTTCTTTCTCTTGTGCAGAGCACCATCACTTCCTCACCTTTCCAATCCTCCTCAACCTTCAAGATTCTGAGCCCCACTACTTCTTCTGATCTCCCCAAAAGTCACTTTCTTGGCTTTGGAATCGAACCCACAACAAATGCCCTTCAAAGATTCCTCCTTTTCACCAAAAGCTCACACTTTGCCAAACCCAGAAACCCCTCCTCACTCTCCATCAATGCTTCTCTGATTGAAGCACCAGTCTTATGGGCTGGTAGGCTTTGCATCTTCTATGCTCTCTTGAAGACTGGTTTGGCTGGATCTCAAGCTAACCCACTTGTCTCAGATTTGGCTGAGAGTGAAGGTGGTGGTGTTGGTATTCAGTCTGATGATTTGGGGTTTTCCAAGTGGTTGAACAGCATACAGGGAAAACCAGTGAAAGACGCAGCTGATAGAAGGAAATTAGTCAGCAAATGGCATCCTACCACAAAGGGTACACTCAGAAGGAATTACAGGGTACCATCTAAATCTGAAGGGCGGCGTGTTCTAAAAGCCATTGCCTCTTTATTGTCAGATGATGATCACTTTGTAGATGCCAGCTCCCACAAGGGTTGTCAGATTAGAAGGGAGACTGCTCATGGAGAAAGTGTGTGTTGCAACAATGTGAGGGCTCTGTTTGATGAGCTCCCAACTCCACACCTAGTTGTGGAAATCACTCCTTTTCCTGCTGGTTCTCTTACAGAAAAGGATTACACCAAAGCTGAGAAATTAGAGAAGGTGCTCAGATCCGGCCCTTCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

28.29

Weight (kDa)

9.39

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 496
AccB1I GGYRCC 1 cut(s) 496
AciI CCGC 1 cut(s) 517
AclWI GGATC 2 cut(s) 307, 759
AcuI CTGAAG 1 cut(s) 531
AfaI GTAC 2 cut(s) 475, 498
AfiI CCNNNNNNNGG 1 cut(s) 685
AgsI TTSAA 5 cut(s) 64, 149, 233, 283, 394
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 6 cut(s) 174, 308, 428, 579, 664, 740
AluI AGCT 6 cut(s) 174, 308, 428, 579, 664, 740
Alw21I GWGCWC 3 cut(s) 26, 666, 762
Alw26I GTCTC 2 cut(s) 325, 602
AlwI GGATC 2 cut(s) 307, 759
AoxI GGCC 1 cut(s) 769
ApeKI GCWGC 1 cut(s) 425
Asp718I GGTACC 1 cut(s) 496
AspS9I GGNCC 1 cut(s) 770
AsuHPI GGTGA 2 cut(s) 30, 157
BanI GGYRCC 1 cut(s) 496
BanII GRGCYC 3 cut(s) 77, 652, 666
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 3 cut(s) 26, 666, 762
BbvI GCAGC 1 cut(s) 437
BccI CCATC 3 cut(s) 35, 221, 508
BclI TGATCA 1 cut(s) 559
BcoDI GTCTC 2 cut(s) 325, 602
BfaI CTAG 1 cut(s) 680
BisI GCNGC 2 cut(s) 426, 518
BlsI GCNGC 2 cut(s) 427, 519
BmgT120I GGNCC 1 cut(s) 770
BmiI GGNNCC 1 cut(s) 498
BmsI GCATC 3 cut(s) 273, 466, 562
BpiI GAAGAC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 558
BsaXI ACNNNNNCTCC 2 cut(s) 612, 642
Bsc4I CCNNNNNNNGG 1 cut(s) 685
Bse1I ACTGG 3 cut(s) 239, 292, 413
Bse3DI GCAATG 1 cut(s) 534
Bse8I GATNNNNATC 1 cut(s) 558
BseGI GGATG 1 cut(s) 457
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 1 cut(s) 685
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 6 cut(s) 62, 324, 336, 493, 732, 775
BseNI ACTGG 3 cut(s) 239, 292, 413
BseRI GAGGAG 2 cut(s) 43, 193
BseXI GCAGC 1 cut(s) 437
BsgI GTGCAG 1 cut(s) 38
BshFI GGCC 1 cut(s) 771
BshNI GGYRCC 1 cut(s) 496
BsiHKAI GWGCWC 3 cut(s) 26, 666, 762
BsiSI CCGG 1 cut(s) 768
BslI CCNNNNNNNGG 1 cut(s) 685
BsmAI GTCTC 2 cut(s) 325, 602
BsnI GGCC 1 cut(s) 771
Bsp1286I GDGCHC 5 cut(s) 26, 77, 652, 666, 762
Bsp143I GATC 4 cut(s) 91, 299, 559, 764
BspACI CCGC 1 cut(s) 517
BspANI GGCC 1 cut(s) 771
BspCNI CTCAG 6 cut(s) 63, 325, 335, 492, 733, 774
BspLI GGNNCC 1 cut(s) 498
BspPI GGATC 2 cut(s) 307, 759
BspT107I GGYRCC 1 cut(s) 496
BsrDI GCAATG 1 cut(s) 534
BsrI ACTGG 3 cut(s) 239, 292, 413
BssMI GATC 4 cut(s) 91, 299, 559, 764
BstC8I GCNNGC 1 cut(s) 577
BstDEI CTNAG 6 cut(s) 71, 322, 333, 479, 741, 761
BstF5I GGATG 1 cut(s) 457
BstKTI GATC 4 cut(s) 94, 302, 562, 767
BstMAI GTCTC 2 cut(s) 325, 602
BstMBI GATC 4 cut(s) 91, 299, 559, 764
BstV1I GCAGC 1 cut(s) 437
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 2 cut(s) 299, 764
BstXI CCANNNNNNTGG 1 cut(s) 246
BstYI RGATCY 2 cut(s) 299, 764
BsuRI GGCC 1 cut(s) 771
BtsCI GGATG 1 cut(s) 457
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 1 cut(s) 577
Cfr13I GGNCC 1 cut(s) 770
CseI GACGC 1 cut(s) 431
Csp6I GTAC 2 cut(s) 474, 497
CspCI CAANNNNNGTGG 2 cut(s) 572, 607
CviAII CATG 1 cut(s) 617
CviQI GTAC 2 cut(s) 474, 497
DdeI CTNAG 6 cut(s) 71, 322, 333, 479, 741, 761
DpnI GATC 4 cut(s) 93, 301, 561, 766
DpnII GATC 4 cut(s) 91, 299, 559, 764
Ecl136II GAGCTC 1 cut(s) 664
Eco24I GRGCYC 3 cut(s) 77, 652, 666
Eco53kI GAGCTC 1 cut(s) 664
Eco57I CTGAAG 1 cut(s) 531
EcoICRI GAGCTC 1 cut(s) 664
EcoT38I GRGCYC 3 cut(s) 77, 652, 666
FaeI CATG 1 cut(s) 620
FaiI YATR 4 cut(s) 247, 273, 401, 618
FatI CATG 1 cut(s) 616
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 2 cut(s) 426, 518
FokI GGATG 1 cut(s) 444
FriOI GRGCYC 3 cut(s) 77, 652, 666
Fsp4HI GCNGC 2 cut(s) 426, 518
FspBI CTAG 1 cut(s) 680
GluI GCNGC 2 cut(s) 426, 518
HaeIII GGCC 1 cut(s) 771
HapII CCGG 1 cut(s) 768
HgaI GACGC 1 cut(s) 431
Hin1II CATG 1 cut(s) 620
HinfI GANTC 3 cut(s) 67, 123, 153
HpaII CCGG 1 cut(s) 768
HphI GGTGA 2 cut(s) 30, 157
Hpy166II GTNNAC 1 cut(s) 476
Hpy188III TCNNGA 2 cut(s) 64, 280
Hpy8I GTNNAC 1 cut(s) 476
HpyAV CCTTC 9 cut(s) 70, 155, 335, 429, 477, 506, 597, 748, 783
HpyCH4V TGCA 3 cut(s) 19, 264, 636
HpyF3I CTNAG 6 cut(s) 71, 322, 333, 479, 741, 761
Hsp92II CATG 1 cut(s) 620
KpnI GGTACC 1 cut(s) 500
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 4 cut(s) 91, 299, 559, 764
LmnI GCTCC 2 cut(s) 584, 669
Lsp1109I GCAGC 1 cut(s) 437
LweI GCATC 3 cut(s) 273, 466, 562
MaeI CTAG 1 cut(s) 680
MaeIII GTNAC 1 cut(s) 104
MalI GATC 4 cut(s) 93, 301, 561, 766
MboI GATC 4 cut(s) 91, 299, 559, 764
MboII GAAGA 3 cut(s) 78, 259, 295
MflI RGATCY 2 cut(s) 299, 764
MhlI GDGCHC 5 cut(s) 26, 77, 652, 666, 762
MluCI AATT 3 cut(s) 440, 487, 746
MnlI CCTC 8 cut(s) 46, 61, 64, 167, 211, 214, 550, 639
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 1 cut(s) 768
NdeII GATC 4 cut(s) 91, 299, 559, 764
NlaIII CATG 1 cut(s) 620
NlaIV GGNNCC 1 cut(s) 498
NmuCI GTSAC 1 cut(s) 104
PfeI GAWTC 3 cut(s) 67, 123, 153
PkrI GCNGC 2 cut(s) 427, 519
Psp124BI GAGCTC 1 cut(s) 666
PspN4I GGNNCC 1 cut(s) 498
PspPI GGNCC 1 cut(s) 770
PsuI RGATCY 2 cut(s) 299, 764
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 2 cut(s) 475, 498
RsaNI GTAC 2 cut(s) 474, 497
SacI GAGCTC 1 cut(s) 666
SatI GCNGC 2 cut(s) 426, 518
Sau3AI GATC 4 cut(s) 91, 299, 559, 764
Sau96I GGNCC 1 cut(s) 770
SduI GDGCHC 5 cut(s) 26, 77, 652, 666, 762
SfaNI GCATC 3 cut(s) 273, 466, 562
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 3 cut(s) 440, 487, 746
SsiI CCGC 1 cut(s) 517
SspMI CTAG 1 cut(s) 680
SstI GAGCTC 1 cut(s) 666
TaqI TCGA 1 cut(s) 126
TasI AATT 3 cut(s) 440, 487, 746
TauI GCSGC 1 cut(s) 520
TfiI GAWTC 3 cut(s) 67, 123, 153
TscAI CASTG 1 cut(s) 420
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 1 cut(s) 104
TspRI CASTG 1 cut(s) 420
XspI CTAG 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.