Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8505191.1

Orthogroup ID

OG0008584

Physical Location & Seq

Genomic Coordinates Reverse (-)

1527 .. 2473

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8505191.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgttgatcagtgtccaaagtacattcgaagaaattagttgtcaattgaggtttgctgcggactctacccttgaaaatatattttctttttctctgaggttaggacatgatgcaattgatggaacagttgtgaaagacgcagctgatagaaggaaattagtcagcaaatggcatcctaccacaaagggtacactcagaaggaattacagggtaccatctaaatctgaagggcggcgtgttctaaaagccattgcctctttattgtcggatgatgatcactttgtagatgccagctcccacaagggttgtcagattagaagggagactgctcatggagaaagtgtgtgttgcaacaatgtgagggctctgtttgatgagctcccaactccacacctagttgtggaaatcactccttttcctgctggttctcttacagaaaaggattacaccaaagctgagaaattagagaaggtgctcagatccggtccttctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.37

Weight (kDa)

8.37

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G32930 AT3G32930
fragaria_vesca	FvH4_3g44830
malus_domestica	MD08G1205200.v1.1
prunus_persica	Prupe.1G537200_v2.0.a1
pyrus_communis	pycom08g17740
rosa_chinensis	RchiOBHm_Chr5g0081531
rosa_laevigata	RLG00000036945
rosa_multiflora	Rmu_co8505191.1_g000002 Rmu_sc0004657.1_g000055 Rmu_sc0007702.1_g000001 Rmu_sc0037529.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002020
rosa_rugosa	Rorug05G0411800 Rorug05G0477000 Rorug05G0477100
rosa_samantha	Rh5AG528400 Rh5BG553200 Rh5CG576000 Rh5DG563300 Rh7AG444400
rosa_wichuraiana	Rw5G049160 Rw7G036920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	211
AccB1I	GGYRCC	1 cut(s)	211
AciI	CCGC	2 cut(s)	59, 232
AclWI	GGATC	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	3 cut(s)	22, 190, 213
AfiI	CCNNNNNNNGG	1 cut(s)	400
AgsI	TTSAA	1 cut(s)	74
AluBI	AGCT	4 cut(s)	143, 294, 379, 455
AluI	AGCT	4 cut(s)	143, 294, 379, 455
Alw21I	GWGCWC	2 cut(s)	381, 477
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	474
ApeKI	GCWGC	2 cut(s)	56, 140
Asp718I	GGTACC	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	485
AsuII	TTCGAA	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	211
BanII	GRGCYC	2 cut(s)	367, 381
Bbv12I	GWGCWC	2 cut(s)	381, 477
BbvI	GCAGC	2 cut(s)	43, 152
BccI	CCATC	2 cut(s)	113, 223
BclI	TGATCA	2 cut(s)	6, 274
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	1 cut(s)	395
BisI	GCNGC	3 cut(s)	57, 141, 233
BlsI	GCNGC	3 cut(s)	58, 142, 234
Bme18I	GGWCC	1 cut(s)	485
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	213
BmsI	GCATC	3 cut(s)	100, 181, 277
Bpu14I	TTCGAA	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	482
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse3DI	GCAATG	1 cut(s)	249
Bse8I	GATNNNNATC	1 cut(s)	273
BseGI	GGATG	2 cut(s)	172, 274
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	4 cut(s)	86, 208, 447, 490
BseXI	GCAGC	2 cut(s)	43, 152
BshNI	GGYRCC	1 cut(s)	211
BsiHKAI	GWGCWC	2 cut(s)	381, 477
BsiSI	CCGG	1 cut(s)	483
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmAI	GTCTC	1 cut(s)	317
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	3 cut(s)	367, 381, 477
Bsp143I	GATC	3 cut(s)	6, 274, 479
BspACI	CCGC	2 cut(s)	59, 232
BspCNI	CTCAG	4 cut(s)	87, 207, 448, 489
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	1 cut(s)	474
BspT104I	TTCGAA	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	249
BssMI	GATC	3 cut(s)	6, 274, 479
Bst4CI	ACNGT	1 cut(s)	127
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	4 cut(s)	95, 194, 456, 476
BstF5I	GGATG	2 cut(s)	172, 274
BstKTI	GATC	3 cut(s)	9, 277, 482
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	3 cut(s)	6, 274, 479
BstV1I	GCAGC	2 cut(s)	43, 152
BstX2I	RGATCY	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	479
BtsCI	GGATG	2 cut(s)	172, 274
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	485
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	21, 189, 212
CspCI	CAANNNNNGTGG	2 cut(s)	287, 322
CviAII	CATG	2 cut(s)	107, 332
CviJI	RGCY	6 cut(s)	143, 248, 294, 365, 379, 455
CviKI_1	RGCY	6 cut(s)	143, 248, 294, 365, 379, 455
CviQI	GTAC	3 cut(s)	21, 189, 212
DdeI	CTNAG	4 cut(s)	95, 194, 456, 476
DpnI	GATC	3 cut(s)	8, 276, 481
DpnII	GATC	3 cut(s)	6, 274, 479
Ecl136II	GAGCTC	1 cut(s)	379
Eco24I	GRGCYC	2 cut(s)	367, 381
Eco47I	GGWCC	1 cut(s)	485
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	379
EcoT38I	GRGCYC	2 cut(s)	367, 381
FaeI	CATG	2 cut(s)	110, 335
FaiI	YATR	3 cut(s)	80, 108, 333
FatI	CATG	2 cut(s)	106, 331
FbaI	TGATCA	2 cut(s)	6, 274
Fnu4HI	GCNGC	3 cut(s)	57, 141, 233
FokI	GGATG	2 cut(s)	159, 281
FriOI	GRGCYC	2 cut(s)	367, 381
Fsp4HI	GCNGC	3 cut(s)	57, 141, 233
FspBI	CTAG	1 cut(s)	395
GluI	GCNGC	3 cut(s)	57, 141, 233
HapII	CCGG	1 cut(s)	483
HgaI	GACGC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	110, 335
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	483
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	6 cut(s)	96, 197, 226, 268, 312, 479
Hpy8I	GTNNAC	1 cut(s)	191
HpyAV	CCTTC	6 cut(s)	144, 192, 221, 312, 463, 498
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	113, 351
HpyF3I	CTNAG	4 cut(s)	95, 194, 456, 476
Hsp92II	CATG	2 cut(s)	110, 335
KpnI	GGTACC	1 cut(s)	215
Ksp22I	TGATCA	2 cut(s)	6, 274
Kzo9I	GATC	3 cut(s)	6, 274, 479
LmnI	GCTCC	2 cut(s)	299, 384
LpnPI	CCDG	4 cut(s)	193, 304, 408, 432
Lsp1109I	GCAGC	2 cut(s)	43, 152
LweI	GCATC	3 cut(s)	100, 181, 277
MaeI	CTAG	1 cut(s)	395
MalI	GATC	3 cut(s)	8, 276, 481
MboI	GATC	3 cut(s)	6, 274, 479
MboII	GAAGA	1 cut(s)	41
MfeI	CAATTG	2 cut(s)	44, 114
MflI	RGATCY	1 cut(s)	479
MhlI	GDGCHC	3 cut(s)	367, 381, 477
MluCI	AATT	6 cut(s)	33, 44, 114, 155, 202, 461
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	4 cut(s)	42, 90, 265, 354
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	483
MunI	CAATTG	2 cut(s)	44, 114
NdeII	GATC	3 cut(s)	6, 274, 479
NlaIII	CATG	2 cut(s)	110, 335
NlaIV	GGNNCC	1 cut(s)	213
NspV	TTCGAA	1 cut(s)	27
PkrI	GCNGC	3 cut(s)	58, 142, 234
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Psp124BI	GAGCTC	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	479
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	3 cut(s)	22, 190, 213
RsaNI	GTAC	3 cut(s)	21, 189, 212
SacI	GAGCTC	1 cut(s)	381
SatI	GCNGC	3 cut(s)	57, 141, 233
Sau3AI	GATC	3 cut(s)	6, 274, 479
Sau96I	GGNCC	1 cut(s)	485
SchI	GAGTC	1 cut(s)	56
SduI	GDGCHC	3 cut(s)	367, 381, 477
SetI	ASST	8 cut(s)	53, 101, 145, 296, 381, 396, 457, 474
SfaNI	GCATC	3 cut(s)	100, 181, 277
SfuI	TTCGAA	1 cut(s)	27
SinI	GGWCC	1 cut(s)	485
Sse9I	AATT	6 cut(s)	33, 44, 114, 155, 202, 461
SsiI	CCGC	2 cut(s)	59, 232
SspMI	CTAG	1 cut(s)	395
SstI	GAGCTC	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	27
TasI	AATT	6 cut(s)	33, 44, 114, 155, 202, 461
TatI	WGTACW	1 cut(s)	20
TauI	GCSGC	1 cut(s)	235
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	2 cut(s)	56, 140
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	485
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.