Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037529.1

Orthogroup ID

OG0008584

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 541

Gene Structure 541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037529.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 415 bp

atgcttctttctcttgtgcagagcaccatcacttcctcacctttccaatcctcctcaaccctcaagattctgagccccactacttcttctgatctccccaaaagtctctttcttggctttggaattgaacccacaacaaatgcgctccaaaggttcctccttttcaccaaaatctcacactttgccaaacccagaaaccccgcctcactctccatcaatgcttccctgattgaagcaccagtcttatgggctggtaggctttgcatattctatgctctcttgaagactggtttggctggatctcaagctaacccacttgtctcagatttggctgagagtgaaggtggtggtgttggtattcagtctgatgatttggggttttccaagtggttgaacagcatacagggaaaaccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

14.64

Weight (kDa)

8.89

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G32930 AT3G32930
fragaria_vesca	FvH4_3g44830
malus_domestica	MD08G1205200.v1.1
prunus_persica	Prupe.1G537200_v2.0.a1
pyrus_communis	pycom08g17740
rosa_chinensis	RchiOBHm_Chr5g0081531
rosa_laevigata	RLG00000036945
rosa_multiflora	Rmu_co8505191.1_g000002 Rmu_sc0004657.1_g000055 Rmu_sc0007702.1_g000001 Rmu_sc0037529.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002020
rosa_rugosa	Rorug05G0411800 Rorug05G0477000 Rorug05G0477100
rosa_samantha	Rh5AG528400 Rh5BG553200 Rh5CG576000 Rh5DG563300 Rh7AG444400
rosa_wichuraiana	Rw5G049160 Rw7G036920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	1 cut(s)	307
AgsI	TTSAA	4 cut(s)	128, 233, 283, 394
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	110, 325
AlwI	GGATC	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	145
AsuHPI	GGTGA	2 cut(s)	30, 157
BanII	GRGCYC	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	26
BccI	CCATC	2 cut(s)	35, 221
BcoDI	GTCTC	2 cut(s)	110, 325
BmiI	GGNNCC	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	290
BpuEI	CTTGAG	2 cut(s)	47, 288
Bse1I	ACTGG	2 cut(s)	239, 292
BseMII	CTCAG	3 cut(s)	62, 324, 336
BseNI	ACTGG	2 cut(s)	239, 292
BseRI	GAGGAG	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	110, 325
Bsp1286I	GDGCHC	2 cut(s)	26, 77
Bsp143I	GATC	2 cut(s)	91, 299
BspACI	CCGC	1 cut(s)	201
BspCNI	CTCAG	3 cut(s)	63, 325, 335
BspLI	GGNNCC	1 cut(s)	155
BspPI	GGATC	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	239, 292
BssMI	GATC	2 cut(s)	91, 299
BstDEI	CTNAG	3 cut(s)	71, 322, 333
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	2 cut(s)	94, 302
BstMAI	GTCTC	2 cut(s)	110, 325
BstMBI	GATC	2 cut(s)	91, 299
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	299
BstXI	CCANNNNNNTGG	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	299
CfoI	GCGC	1 cut(s)	145
CviJI	RGCY	7 cut(s)	75, 117, 251, 259, 296, 308, 332
CviKI_1	RGCY	7 cut(s)	75, 117, 251, 259, 296, 308, 332
DdeI	CTNAG	3 cut(s)	71, 322, 333
DpnI	GATC	2 cut(s)	93, 301
DpnII	GATC	2 cut(s)	91, 299
Eco24I	GRGCYC	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	77
FaiI	YATR	4 cut(s)	247, 266, 273, 401
FauI	CCCGC	1 cut(s)	208
FriOI	GRGCYC	1 cut(s)	77
GlaI	GCGC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	145
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HinfI	GANTC	1 cut(s)	67
HphI	GGTGA	2 cut(s)	30, 157
Hpy188I	TCNGA	4 cut(s)	72, 91, 325, 367
Hpy188III	TCNNGA	2 cut(s)	64, 280
HpyAV	CCTTC	1 cut(s)	335
HpyCH4V	TGCA	2 cut(s)	19, 264
HpyF3I	CTNAG	3 cut(s)	71, 322, 333
HspAI	GCGC	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	91, 299
LmnI	GCTCC	1 cut(s)	150
LpnPI	CCDG	7 cut(s)	205, 237, 239, 252, 273, 282, 389
MalI	GATC	2 cut(s)	93, 301
MboI	GATC	2 cut(s)	91, 299
MboII	GAAGA	2 cut(s)	78, 295
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	2 cut(s)	26, 77
MluCI	AATT	1 cut(s)	123
MnlI	CCTC	6 cut(s)	46, 61, 64, 71, 167, 214
NdeII	GATC	2 cut(s)	91, 299
NlaIV	GGNNCC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	299
Sau3AI	GATC	2 cut(s)	91, 299
SduI	GDGCHC	2 cut(s)	26, 77
SetI	ASST	4 cut(s)	43, 155, 310, 346
SmlI	CTYRAG	2 cut(s)	62, 303
SmoI	CTYRAG	2 cut(s)	62, 303
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	201
TasI	AATT	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.