MD10G1123900.v1.1

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0007697
Physical Location & Seq
Reverse (-)
20152661 .. 20152969
309 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1123900.v1.1.491

Sequence Viewer

Length: 309 bp
ATGATGAACAACGGGCGATACATCTTGCAGAAAATCAAAGGGTCGGCAGAGATCAACTCGTGTATAGGCGAGACGTGGTACCCTCGGCGGTCGTCGGATCTGAGGCAGTACCACAAGAACTACCAGAGAGAGACGTGGGACCGGCTGCTGCAGTGCTTGAGCCACGAAGGGCTGAGCGTGAACGGGAAGGTGGCGAAGCCGGTGTTGAATGAGAGGTTCAAGAGCTTCAACGCCTTGTTCGATGAGATCCACAAGACGCAAAGCACGTGGGTGGTGAGCGACGAGCATATGCAGTCGGAGGTCGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

103

Amino Acids

11.96

Weight (kDa)

8.62

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo70_C PF03081 1 - 101 5.6e-32 Exo70 exocyst complex subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 78
AccB1I GGYRCC 1 cut(s) 78
AciI CCGC 1 cut(s) 88
AclWI GGATC 2 cut(s) 105, 241
AcvI CACGTG 1 cut(s) 267
AfaI GTAC 2 cut(s) 80, 110
AgsI TTSAA 3 cut(s) 208, 220, 229
AjiI CACGTC 2 cut(s) 75, 135
AleI CACNNNNGTG 1 cut(s) 269
AluBI AGCT 1 cut(s) 225
AluI AGCT 1 cut(s) 225
Alw26I GTCTC 2 cut(s) 65, 125
AlwI GGATC 2 cut(s) 105, 241
ApeKI GCWGC 2 cut(s) 145, 148
Asp718I GGTACC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 286
AvaII GGWCC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 78
BauI CACGAG 1 cut(s) 58
BbrPI CACGTG 1 cut(s) 267
BbvI GCAGC 2 cut(s) 132, 135
BcoDI GTCTC 2 cut(s) 65, 125
BfmI CTRYAG 1 cut(s) 149
BisI GCNGC 2 cut(s) 146, 149
BlpI GCTNAGC 1 cut(s) 173
BlsI GCNGC 2 cut(s) 147, 150
Bme18I GGWCC 1 cut(s) 139
BmgBI CACGTC 2 cut(s) 75, 135
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 80, 140
BplI GAGNNNNNCTC 2 cut(s) 41, 73
Bpu1102I GCTNAGC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 178
BsaAI YACGTR 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 83
BsaXI ACNNNNNCTCC 1 cut(s) 290
Bse118I RCCGGY 2 cut(s) 141, 199
BseDI CCNNGG 1 cut(s) 83
BseMII CTCAG 2 cut(s) 92, 164
BseXI GCAGC 2 cut(s) 132, 135
Bsh1285I CGRYCG 1 cut(s) 92
BshNI GGYRCC 1 cut(s) 78
BsiEI CGRYCG 1 cut(s) 92
BsiSI CCGG 2 cut(s) 142, 200
BslFI GGGAC 1 cut(s) 152
BsmAI GTCTC 2 cut(s) 65, 125
BsmBI CGTCTC 2 cut(s) 65, 125
BsmFI GGGAC 1 cut(s) 152
Bsp143I GATC 3 cut(s) 51, 97, 246
Bsp1720I GCTNAGC 1 cut(s) 173
BspACI CCGC 1 cut(s) 88
BspCNI CTCAG 2 cut(s) 93, 165
BspLI GGNNCC 2 cut(s) 80, 140
BspMAI CTGCAG 1 cut(s) 153
BspPI GGATC 2 cut(s) 105, 241
BspT107I GGYRCC 1 cut(s) 78
BsrFI RCCGGY 2 cut(s) 141, 199
BssAI RCCGGY 2 cut(s) 141, 199
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 3 cut(s) 51, 97, 246
BssSI CACGAG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 58
BstBAI YACGTR 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 101, 173
BstKTI GATC 3 cut(s) 54, 100, 249
BstMAI GTCTC 2 cut(s) 65, 125
BstMBI GATC 3 cut(s) 51, 97, 246
BstMCI CGRYCG 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 132, 135
BstX2I RGATCY 2 cut(s) 97, 246
BstYI RGATCY 2 cut(s) 97, 246
BtrI CACGTC 2 cut(s) 75, 135
BtsI GCAGTG 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 158
Cfr10I RCCGGY 2 cut(s) 141, 199
Cfr13I GGNCC 1 cut(s) 139
CseI GACGC 1 cut(s) 265
Csp6I GTAC 2 cut(s) 79, 109
CspCI CAANNNNNGTGG 2 cut(s) 248, 283
CviJI RGCY 5 cut(s) 145, 162, 172, 199, 225
CviKI_1 RGCY 5 cut(s) 145, 162, 172, 199, 225
CviQI GTAC 2 cut(s) 79, 109
DdeI CTNAG 2 cut(s) 101, 173
DpnI GATC 3 cut(s) 53, 99, 248
DpnII GATC 3 cut(s) 51, 97, 246
Eco47I GGWCC 1 cut(s) 139
Eco72I CACGTG 1 cut(s) 267
Esp3I CGTCTC 2 cut(s) 65, 125
FaiI YATR 3 cut(s) 65, 288, 290
FaqI GGGAC 1 cut(s) 152
FauNDI CATATG 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 146, 149
Fsp4HI GCNGC 2 cut(s) 146, 149
GluI GCNGC 2 cut(s) 146, 149
HapII CCGG 2 cut(s) 142, 200
HgaI GACGC 1 cut(s) 265
HpaII CCGG 2 cut(s) 142, 200
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 3 cut(s) 97, 102, 298
Hpy188III TCNNGA 1 cut(s) 220
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 2 cut(s) 97, 284
HpyAV CCTTC 2 cut(s) 161, 181
HpyCH4IV ACGT 3 cut(s) 74, 134, 266
HpyCH4V TGCA 3 cut(s) 28, 151, 292
HpyF3I CTNAG 2 cut(s) 101, 173
HpySE526I ACGT 3 cut(s) 74, 134, 266
KpnI GGTACC 1 cut(s) 82
Kzo9I GATC 3 cut(s) 51, 97, 246
LpnPI CCDG 3 cut(s) 137, 155, 213
Lsp1109I GCAGC 2 cut(s) 132, 135
MaeII ACGT 3 cut(s) 74, 134, 266
MalI GATC 3 cut(s) 53, 99, 248
MboI GATC 3 cut(s) 51, 97, 246
MflI RGATCY 2 cut(s) 97, 246
MmeI TCCRAC 2 cut(s) 75, 276
MnlI CCTC 4 cut(s) 93, 96, 207, 292
MslI CAYNNNNRTG 1 cut(s) 269
MspI CCGG 2 cut(s) 142, 200
NdeI CATATG 1 cut(s) 288
NdeII GATC 3 cut(s) 51, 97, 246
NlaIV GGNNCC 2 cut(s) 80, 140
NmeAIII GCCGAG 1 cut(s) 64
OliI CACNNNNGTG 1 cut(s) 269
PcsI WCGNNNNNNNCGW 2 cut(s) 237, 263
PkrI GCNGC 2 cut(s) 147, 150
PmaCI CACGTG 1 cut(s) 267
PmlI CACGTG 1 cut(s) 267
Ppu21I YACGTR 1 cut(s) 267
PspCI CACGTG 1 cut(s) 267
PspN4I GGNNCC 2 cut(s) 80, 140
PspPI GGNCC 1 cut(s) 139
PstI CTGCAG 1 cut(s) 153
PsuI RGATCY 2 cut(s) 97, 246
RsaI GTAC 2 cut(s) 80, 110
RsaNI GTAC 2 cut(s) 79, 109
RseI CAYNNNNRTG 1 cut(s) 269
SatI GCNGC 2 cut(s) 146, 149
Sau3AI GATC 3 cut(s) 51, 97, 246
Sau96I GGNCC 1 cut(s) 139
SetI ASST 7 cut(s) 77, 137, 192, 218, 227, 269, 303
SfcI CTRYAG 1 cut(s) 149
SinI GGWCC 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
SsiI CCGC 1 cut(s) 88
TaiI ACGT 3 cut(s) 77, 137, 269
TaqI TCGA 1 cut(s) 240
TscAI CASTG 1 cut(s) 158
TseI GCWGC 2 cut(s) 145, 148
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.