Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8050736.1

Orthogroup ID

OG0007697

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 551

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8050736.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 550 bp

atggccaagatgagggagtctctcttgtcggtctgttctatgggattgaaattccaagaaaggcacggtggtttgatcaaccgcctaagtagcattcagcaccgagccatggcctatctggaagaagaattcagaatccttctagaagaatccaaaaccgagtctgatcatcatcactctacagcagctgatcacaaccataaccataaccataacagtaacaaagacagcagcagtggtaacaaaggaaagaacgatcaagaatcacaaccggaatccgagtcagaatcaaataaagaaggggttgttgaatttcccgggttccctgaggaggtcgtgtccaacctgaataaaatagccaccaagatgatctccgccggctacgaatccgagtgttgcgaggtctacatcatctccaggaggcatgcattcgatgaaaatctccacaagctcggcctagagaagcacagcatcgacgacgtgcagaagatgcactgggaagcgttggagagagagatcatgttgtgggtcaaggcattcaagcaatgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

183

Amino Acids

21.01

Weight (kDa)

5.79

Isoelectric Point (pI)

70.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13990
fragaria_vesca	FvH4_6g53940
malus_domestica	MD00G1220500.v1.1 MD09G1007100.v1.1 MD10G1123900.v1.1 MD10G1124000.v1.1 MD17G1010900.v1.1 MD17G1254300.v1.1
prunus_persica	Prupe.3G310000_v2.0.a1
pyrus_communis	pycom111g00530 pycom17g00560
rosa_chinensis	RchiOBHm_Chr2g0176101
rosa_laevigata	RLG00000022381
rosa_multiflora	Rmu_co8050736.1_g000001 Rmu_sc0009879.1_g000001 Rmu_sc0012674.1_g000001 Rmu_sc0041131.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076770
rosa_rugosa	Rorug02G0590700
rosa_samantha	Rh2AG669300 Rh2BG680900 Rh2CG643800 Rh2DG694600
rosa_wichuraiana	Rw2G054900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	405
AciI	CCGC	2 cut(s)	82, 375
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	50, 128, 311
AfiI	CCNNNNNNNGG	3 cut(s)	12, 109, 331
AgsI	TTSAA	3 cut(s)	49, 311, 541
AjiI	CACGTC	1 cut(s)	481
AjnI	CCWGG	1 cut(s)	416
AluBI	AGCT	2 cut(s)	188, 451
AluI	AGCT	2 cut(s)	188, 451
Alw26I	GTCTC	1 cut(s)	24
AlwNI	CAGNNNCTG	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	3 cut(s)	3, 111, 454
ApeKI	GCWGC	2 cut(s)	185, 231
ApoI	RAATTY	3 cut(s)	50, 128, 311
AsuC2I	CCSGG	2 cut(s)	318, 319
AvaI	CYCGRG	1 cut(s)	317
AxyI	CCTNAGG	1 cut(s)	327
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	2 cut(s)	197, 243
BciT130I	CCWGG	1 cut(s)	418
BclI	TGATCA	3 cut(s)	75, 166, 190
BcnI	CCSGG	2 cut(s)	318, 319
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	2 cut(s)	143, 458
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	2 cut(s)	186, 232
BlsI	GCNGC	2 cut(s)	187, 233
Bme1390I	CCNGG	3 cut(s)	318, 319, 418
BmeT110I	CYCGRG	1 cut(s)	317
BmgBI	CACGTC	1 cut(s)	481
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	3 cut(s)	318, 319, 418
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	2 cut(s)	480, 480
BmuI	ACTGGG	1 cut(s)	505
BplI	GAGNNNNNCTC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	400
BpuMI	CCSGG	2 cut(s)	318, 319
BsaBI	GATNNNNATC	2 cut(s)	171, 438
BsaJI	CCNNGG	2 cut(s)	108, 317
BsaWI	WCCGGW	1 cut(s)	271
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 398, 428
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 109, 331
Bse118I	RCCGGY	1 cut(s)	377
Bse1I	ACTGG	1 cut(s)	500
Bse21I	CCTNAGG	1 cut(s)	327
Bse8I	GATNNNNATC	2 cut(s)	171, 438
BseBI	CCWGG	1 cut(s)	418
BseDI	CCNNGG	2 cut(s)	108, 317
BseJI	GATNNNNATC	2 cut(s)	171, 438
BseLI	CCNNNNNNNGG	3 cut(s)	12, 109, 331
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	500
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	2 cut(s)	197, 243
BsgI	GTGCAG	1 cut(s)	503
BshFI	GGCC	3 cut(s)	5, 113, 456
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	3 cut(s)	272, 318, 378
BslI	CCNNNNNNNGG	3 cut(s)	12, 109, 331
BsmAI	GTCTC	1 cut(s)	24
BsmI	GAATGC	3 cut(s)	93, 428, 536
BsnI	GGCC	3 cut(s)	5, 113, 456
BsoBI	CYCGRG	1 cut(s)	317
Bsp143I	GATC	6 cut(s)	75, 166, 190, 256, 369, 516
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	2 cut(s)	82, 375
BspANI	GGCC	3 cut(s)	5, 113, 456
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	500
BssAI	RCCGGY	1 cut(s)	377
BssECI	CCNNGG	2 cut(s)	108, 317
BssMI	GATC	6 cut(s)	75, 166, 190, 256, 369, 516
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	418
Bst4CI	ACNGT	2 cut(s)	68, 218
BstAPI	GCANNNNNTGC	1 cut(s)	490
BstC8I	GCNNGC	2 cut(s)	379, 426
BstDEI	CTNAG	2 cut(s)	86, 327
BstDSI	CCRYGG	1 cut(s)	108
BstKTI	GATC	6 cut(s)	78, 169, 193, 259, 372, 519
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	6 cut(s)	75, 166, 190, 256, 369, 516
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 490
BstNI	CCWGG	1 cut(s)	418
BstNSI	RCATGY	1 cut(s)	428
BstSCI	CCNGG	3 cut(s)	316, 317, 416
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	197, 243
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	3 cut(s)	5, 113, 456
BtgI	CCRYGG	1 cut(s)	108
BtrI	CACGTC	1 cut(s)	481
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	2 cut(s)	241, 493
Cac8I	GCNNGC	2 cut(s)	379, 426
CaiI	CAGNNNCTG	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	377
Cfr9I	CCCGGG	1 cut(s)	317
CviAII	CATG	3 cut(s)	109, 425, 520
CviJI	RGCY	8 cut(s)	5, 107, 113, 188, 359, 381, 451, 456
CviKI_1	RGCY	8 cut(s)	5, 107, 113, 188, 359, 381, 451, 456
DdeI	CTNAG	2 cut(s)	86, 327
DpnI	GATC	6 cut(s)	77, 168, 192, 258, 371, 518
DpnII	GATC	6 cut(s)	75, 166, 190, 256, 369, 516
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	108
Eco81I	CCTNAGG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	3 cut(s)	112, 428, 523
FaiI	YATR	7 cut(s)	41, 110, 201, 207, 213, 426, 521
FatI	CATG	3 cut(s)	108, 424, 519
FbaI	TGATCA	3 cut(s)	75, 166, 190
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	2 cut(s)	186, 232
Fsp4HI	GCNGC	2 cut(s)	186, 232
FspBI	CTAG	2 cut(s)	143, 458
GluI	GCNGC	2 cut(s)	186, 232
GsuI	CTGGAG	1 cut(s)	400
HaeIII	GGCC	3 cut(s)	5, 113, 456
HapII	CCGG	3 cut(s)	272, 318, 378
Hin1II	CATG	3 cut(s)	112, 428, 523
HinfI	GANTC	9 cut(s)	17, 135, 149, 161, 263, 275, 281, 287, 386
HpaII	CCGG	3 cut(s)	272, 318, 378
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	5 cut(s)	134, 166, 280, 286, 391
Hpy188III	TCNNGA	3 cut(s)	119, 143, 260
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	2 cut(s)	479, 482
HpyAV	CCTTC	2 cut(s)	149, 293
HpyCH4III	ACNGT	2 cut(s)	68, 218
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	3 cut(s)	428, 484, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 490
HpyF3I	CTNAG	2 cut(s)	86, 327
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	3 cut(s)	112, 428, 523
KroI	GCCGGC	1 cut(s)	377
KroNI	GCCGGC	1 cut(s)	379
Ksp22I	TGATCA	3 cut(s)	75, 166, 190
Kzo9I	GATC	6 cut(s)	75, 166, 190, 256, 369, 516
LpnPI	CCDG	9 cut(s)	104, 285, 331, 339, 359, 391, 403, 430, 481
Lsp1109I	GCAGC	2 cut(s)	197, 243
LweI	GCATC	2 cut(s)	480, 480
MaeI	CTAG	2 cut(s)	143, 458
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	2 cut(s)	218, 239
MalI	GATC	6 cut(s)	77, 168, 192, 258, 371, 518
MboI	GATC	6 cut(s)	75, 166, 190, 256, 369, 516
MboII	GAAGA	4 cut(s)	134, 137, 158, 499
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	50, 128, 311
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	26, 170, 290
MmeI	TCCRAC	2 cut(s)	366, 486
MnlI	CCTC	5 cut(s)	6, 322, 325, 394, 414
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	430
MroNI	GCCGGC	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	365
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	3 cut(s)	272, 318, 378
MspR9I	CCNGG	3 cut(s)	318, 319, 418
Mva1269I	GAATGC	3 cut(s)	93, 428, 536
MvaI	CCWGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	2 cut(s)	90, 490
NaeI	GCCGGC	1 cut(s)	379
NciI	CCSGG	2 cut(s)	318, 319
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	6 cut(s)	75, 166, 190, 256, 369, 516
NgoMIV	GCCGGC	1 cut(s)	377
NlaIII	CATG	3 cut(s)	112, 428, 523
NlaIV	GGNNCC	1 cut(s)	323
NmeAIII	GCCGAG	1 cut(s)	432
NsiI	ATGCAT	1 cut(s)	430
NspI	RCATGY	1 cut(s)	428
PaeI	GCATGC	1 cut(s)	428
PctI	GAATGC	3 cut(s)	93, 428, 536
PdiI	GCCGGC	1 cut(s)	379
PfeI	GAWTC	6 cut(s)	135, 149, 263, 275, 287, 386
PfoI	TCCNGGA	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	187, 233
PleI	GAGTC	3 cut(s)	25, 169, 289
PpsI	GAGTC	3 cut(s)	25, 169, 289
Psp6I	CCWGG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	365
SatI	GCNGC	2 cut(s)	186, 232
Sau3AI	GATC	6 cut(s)	75, 166, 190, 256, 369, 516
SchI	GAGTC	3 cut(s)	26, 170, 290
ScrFI	CCNGG	3 cut(s)	318, 319, 418
SetI	ASST	6 cut(s)	190, 336, 348, 405, 453, 483
SfaNI	GCATC	2 cut(s)	480, 480
SfcI	CTRYAG	1 cut(s)	180
SmaI	CCCGGG	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	365
SphI	GCATGC	1 cut(s)	428
Sse9I	AATT	3 cut(s)	50, 128, 311
SsiI	CCGC	2 cut(s)	82, 375
SspMI	CTAG	2 cut(s)	143, 458
StyD4I	CCNGG	3 cut(s)	316, 317, 416
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	68, 218
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	2 cut(s)	432, 474
TaqII	GACCGA	1 cut(s)	19
TasI	AATT	3 cut(s)	50, 128, 311
TfiI	GAWTC	6 cut(s)	135, 149, 263, 275, 287, 386
TscAI	CASTG	2 cut(s)	241, 500
TseI	GCWGC	2 cut(s)	185, 231
TspDTI	ATGAA	1 cut(s)	450
TspMI	CCCGGG	1 cut(s)	317
TspRI	CASTG	2 cut(s)	241, 500
XapI	RAATTY	3 cut(s)	50, 128, 311
XbaI	TCTAGA	1 cut(s)	142
XceI	RCATGY	1 cut(s)	428
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XmaI	CCCGGG	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	405
XspI	CTAG	2 cut(s)	143, 458
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.