Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0007697

Physical Location & Seq

Genomic Coordinates Forward (+)

30943013 .. 30944328

Gene Structure 1316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1254300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGATACAGCTTCTCAATTTCGTGGAGGGGATTGCGATATCGAAGCGGTCGGCGGAGAAGCTGTTTAAGACGCTGGACATGTATGAGGCGTTGCGGGAGGTGATCCCCAAAATGGACAACTTGTTTCCCGCTGATTGCGTGAACGAGCTGAAGCACGAGATCTCTAATGTCCGGACCCGCCTCGGCGTGGTAGCGATATGCATTTTCTGTGATCTGGAGAACTCACTTAAGGCCGAGACGGTTAGAAACCCGGTTCCTGGAGGGGCGGTCCATCCGCTAACCCGATACACGATGAAATACCTGAGGTACGCGTGCGAGTACAAGGACACGCTCGAATTGGTTTTTTCAGAGAGCACTCGAAGATCGAACGCGCCGATTCGACGAGTCGGCCTGAACGCGGCGAGTACGAGGCAGGGGAGGGATCCGGGAACACGAGCGGCGACCAATCGCCGGTCGGCAGAGATCAACTCGTGTATAGGCGAGACGTGGTACCGTCGGCGGTCGTCGGATCTGAGGCAGTACCACAAGAACTACCAGAAAGAGACGTGGGACCGGCTGCTGCAGTGCTTGAGCCACGAAGGGCTGAGCGTGAACGGGAAGGTGGCGAAGCCGGTGTTGAATGAGAGGTTCAAGAGCTTCAACGCCTTGTTCGATGAGATCCACAAGACGCAAAGCACGTGGGTGGTGAGCGACGAGCAGATGCAGTCGGAGGTCGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

240

Amino Acids

27.42

Weight (kDa)

9.12

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo70_C	PF03081	1 - 132	9.1e-35	Exo70 exocyst complex subunit C-terminal
Exo70_C	PF03081	150 - 238	1.1e-24	Exo70 exocyst complex subunit C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13990
fragaria_vesca	FvH4_6g53940
malus_domestica	MD00G1220500.v1.1 MD09G1007100.v1.1 MD10G1123900.v1.1 MD10G1124000.v1.1 MD17G1010900.v1.1 MD17G1254300.v1.1
prunus_persica	Prupe.3G310000_v2.0.a1
pyrus_communis	pycom111g00530 pycom17g00560
rosa_chinensis	RchiOBHm_Chr2g0176101
rosa_laevigata	RLG00000022381
rosa_multiflora	Rmu_co8050736.1_g000001 Rmu_sc0009879.1_g000001 Rmu_sc0012674.1_g000001 Rmu_sc0041131.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076770
rosa_rugosa	Rorug02G0590700
rosa_samantha	Rh2AG669300 Rh2BG680900 Rh2CG643800 Rh2DG694600
rosa_wichuraiana	Rw2G054900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	489
AccB1I	GGYRCC	1 cut(s)	489
AccBSI	CCGCTC	1 cut(s)	437
AccII	CGCG	3 cut(s)	311, 371, 398
AccIII	TCCGGA	1 cut(s)	171
AclWI	GGATC	5 cut(s)	97, 416, 429, 516, 652
AcuI	CTGAAG	1 cut(s)	170
AcvI	CACGTG	1 cut(s)	678
AfaI	GTAC	5 cut(s)	308, 320, 406, 491, 521
AfiI	CCNNNNNNNGG	5 cut(s)	112, 187, 257, 397, 450
AflII	CTTAAG	1 cut(s)	227
AflIII	ACRYGT	2 cut(s)	78, 309
AgsI	TTSAA	3 cut(s)	619, 631, 640
AjiI	CACGTC	2 cut(s)	486, 546
AjnI	CCWGG	1 cut(s)	256
AleI	CACNNNNGTG	1 cut(s)	680
AluBI	AGCT	4 cut(s)	10, 61, 148, 636
AluI	AGCT	4 cut(s)	10, 61, 148, 636
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	3 cut(s)	230, 476, 536
AlwI	GGATC	5 cut(s)	97, 416, 429, 516, 652
Aor13HI	TCCGGA	1 cut(s)	171
AoxI	GGCC	2 cut(s)	231, 388
ApeKI	GCWGC	2 cut(s)	556, 559
Asp718I	GGTACC	1 cut(s)	489
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	3 cut(s)	174, 268, 550
AsuC2I	CCSGG	2 cut(s)	251, 426
AsuHPI	GGTGA	2 cut(s)	112, 697
AvaII	GGWCC	3 cut(s)	174, 268, 550
AxyI	CCTNAGG	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	489
BauI	CACGAG	3 cut(s)	155, 432, 469
BbrPI	CACGTG	1 cut(s)	678
Bbv12I	GWGCWC	1 cut(s)	356
BbvI	GCAGC	2 cut(s)	543, 546
BccI	CCATC	1 cut(s)	279
BciT130I	CCWGG	1 cut(s)	258
BcnI	CCSGG	2 cut(s)	251, 426
BcoDI	GTCTC	3 cut(s)	230, 476, 536
BfmI	CTRYAG	1 cut(s)	560
BfrI	CTTAAG	1 cut(s)	227
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	4 cut(s)	399, 438, 557, 560
BlpI	GCTNAGC	1 cut(s)	584
BlsI	GCNGC	4 cut(s)	400, 439, 558, 561
Bme1390I	CCNGG	3 cut(s)	251, 258, 426
Bme18I	GGWCC	3 cut(s)	174, 268, 550
BmgBI	CACGTC	2 cut(s)	486, 546
BmgT120I	GGNCC	3 cut(s)	174, 268, 550
BmiI	GGNNCC	5 cut(s)	176, 255, 423, 491, 551
BmrFI	CCNGG	3 cut(s)	251, 258, 426
BmsI	GCATC	1 cut(s)	690
BplI	GAGNNNNNCTC	2 cut(s)	452, 484
BpmI	CTGGAG	2 cut(s)	236, 279
Bpu1102I	GCTNAGC	1 cut(s)	584
BpuEI	CTTGAG	1 cut(s)	589
BpuMI	CCSGG	2 cut(s)	251, 426
BsaAI	YACGTR	1 cut(s)	678
BsaJI	CCNNGG	1 cut(s)	181
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	5 cut(s)	47, 77, 252, 282, 701
Bsc4I	CCNNNNNNNGG	5 cut(s)	112, 187, 257, 397, 450
Bse118I	RCCGGY	3 cut(s)	450, 552, 610
Bse21I	CCTNAGG	1 cut(s)	302
BseAI	TCCGGA	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	5 cut(s)	112, 187, 257, 397, 450
BseMII	CTCAG	3 cut(s)	293, 503, 575
BseXI	GCAGC	2 cut(s)	543, 546
Bsh1236I	CGCG	3 cut(s)	311, 371, 398
Bsh1285I	CGRYCG	3 cut(s)	50, 455, 503
BshFI	GGCC	2 cut(s)	233, 390
BshNI	GGYRCC	1 cut(s)	489
BsiEI	CGRYCG	3 cut(s)	50, 455, 503
BsiHKAI	GWGCWC	1 cut(s)	356
BsiSI	CCGG	6 cut(s)	172, 251, 425, 451, 553, 611
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	5 cut(s)	112, 187, 257, 397, 450
BsmAI	GTCTC	3 cut(s)	230, 476, 536
BsmBI	CGTCTC	3 cut(s)	230, 476, 536
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	2 cut(s)	233, 390
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp13I	TCCGGA	1 cut(s)	171
Bsp143I	GATC	8 cut(s)	102, 159, 211, 362, 421, 462, 508, 657
Bsp1720I	GCTNAGC	1 cut(s)	584
BspANI	GGCC	2 cut(s)	233, 390
BspCNI	CTCAG	3 cut(s)	294, 504, 576
BspEI	TCCGGA	1 cut(s)	171
BspFNI	CGCG	3 cut(s)	311, 371, 398
BspLI	GGNNCC	5 cut(s)	176, 255, 423, 491, 551
BspMAI	CTGCAG	1 cut(s)	564
BspPI	GGATC	5 cut(s)	97, 416, 429, 516, 652
BspT107I	GGYRCC	1 cut(s)	489
BspTI	CTTAAG	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	437
BsrFI	RCCGGY	3 cut(s)	450, 552, 610
BssAI	RCCGGY	3 cut(s)	450, 552, 610
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	8 cut(s)	102, 159, 211, 362, 421, 462, 508, 657
BssSI	CACGAG	3 cut(s)	155, 432, 469
Bst2BI	CACGAG	3 cut(s)	155, 432, 469
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	241, 494
BstAFI	CTTAAG	1 cut(s)	227
BstBAI	YACGTR	1 cut(s)	678
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	3 cut(s)	302, 512, 584
BstF5I	GGATG	1 cut(s)	271
BstFNI	CGCG	3 cut(s)	311, 371, 398
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	8 cut(s)	105, 162, 214, 365, 424, 465, 511, 660
BstMAI	GTCTC	3 cut(s)	230, 476, 536
BstMBI	GATC	8 cut(s)	102, 159, 211, 362, 421, 462, 508, 657
BstMCI	CGRYCG	3 cut(s)	50, 455, 503
BstNI	CCWGG	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	3 cut(s)	249, 256, 424
BstSFI	CTRYAG	1 cut(s)	560
BstUI	CGCG	3 cut(s)	311, 371, 398
BstV1I	GCAGC	2 cut(s)	543, 546
BstX2I	RGATCY	4 cut(s)	159, 421, 508, 657
BstYI	RGATCY	4 cut(s)	159, 421, 508, 657
Bsu36I	CCTNAGG	1 cut(s)	302
BsuRI	GGCC	2 cut(s)	233, 390
BtrI	CACGTC	2 cut(s)	486, 546
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	1 cut(s)	569
BtsIMutI	CAGTG	1 cut(s)	569
Cac8I	GCNNGC	1 cut(s)	313
CfoI	GCGC	1 cut(s)	373
Cfr10I	RCCGGY	3 cut(s)	450, 552, 610
Cfr13I	GGNCC	3 cut(s)	174, 268, 550
CseI	GACGC	2 cut(s)	79, 676
Csp6I	GTAC	5 cut(s)	307, 319, 405, 490, 520
CspCI	CAANNNNNGTGG	2 cut(s)	659, 694
CviAII	CATG	1 cut(s)	79
CviQI	GTAC	5 cut(s)	307, 319, 405, 490, 520
DdeI	CTNAG	3 cut(s)	302, 512, 584
DpnI	GATC	8 cut(s)	104, 161, 213, 364, 423, 464, 510, 659
DpnII	GATC	8 cut(s)	102, 159, 211, 362, 421, 462, 508, 657
EciI	GGCGGA	1 cut(s)	68
Eco32I	GATATC	1 cut(s)	39
Eco47I	GGWCC	3 cut(s)	174, 268, 550
Eco57I	CTGAAG	1 cut(s)	170
Eco72I	CACGTG	1 cut(s)	678
Eco81I	CCTNAGG	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	256
EcoRV	GATATC	1 cut(s)	39
EcoT22I	ATGCAT	1 cut(s)	203
Esp3I	CGTCTC	3 cut(s)	230, 476, 536
FaeI	CATG	1 cut(s)	82
FaiI	YATR	4 cut(s)	80, 84, 199, 476
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	1 cut(s)	78
FauI	CCCGC	3 cut(s)	87, 136, 185
Fnu4HI	GCNGC	4 cut(s)	399, 438, 557, 560
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	4 cut(s)	399, 438, 557, 560
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	4 cut(s)	399, 438, 557, 560
GsuI	CTGGAG	2 cut(s)	236, 279
HaeIII	GGCC	2 cut(s)	233, 390
HapII	CCGG	6 cut(s)	172, 251, 425, 451, 553, 611
HgaI	GACGC	2 cut(s)	79, 676
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HinfI	GANTC	2 cut(s)	376, 384
HpaII	CCGG	6 cut(s)	172, 251, 425, 451, 553, 611
HphI	GGTGA	2 cut(s)	112, 697
Hpy166II	GTNNAC	2 cut(s)	142, 592
Hpy188I	TCNGA	4 cut(s)	349, 508, 513, 709
Hpy188III	TCNNGA	3 cut(s)	172, 215, 631
Hpy8I	GTNNAC	2 cut(s)	142, 592
Hpy99I	CGWCG	4 cut(s)	384, 498, 508, 695
HpyAV	CCTTC	2 cut(s)	572, 592
HpyCH4III	ACNGT	2 cut(s)	241, 494
HpyCH4IV	ACGT	3 cut(s)	485, 545, 677
HpyCH4V	TGCA	3 cut(s)	201, 562, 703
HpyF3I	CTNAG	3 cut(s)	302, 512, 584
HpySE526I	ACGT	3 cut(s)	485, 545, 677
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	1 cut(s)	371
Kpn2I	TCCGGA	1 cut(s)	171
KpnI	GGTACC	1 cut(s)	493
Kzo9I	GATC	8 cut(s)	102, 159, 211, 362, 421, 462, 508, 657
Lsp1109I	GCAGC	2 cut(s)	543, 546
LweI	GCATC	1 cut(s)	690
MaeII	ACGT	3 cut(s)	485, 545, 677
MalI	GATC	8 cut(s)	104, 161, 213, 364, 423, 464, 510, 659
MbiI	CCGCTC	1 cut(s)	437
MboI	GATC	8 cut(s)	102, 159, 211, 362, 421, 462, 508, 657
MboII	GAAGA	1 cut(s)	372
MflI	RGATCY	4 cut(s)	159, 421, 508, 657
MhlI	GDGCHC	1 cut(s)	356
MluCI	AATT	2 cut(s)	16, 335
MluI	ACGCGT	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	393
MmeI	TCCRAC	2 cut(s)	486, 687
Mph1103I	ATGCAT	1 cut(s)	203
MroI	TCCGGA	1 cut(s)	171
MseI	TTAA	2 cut(s)	66, 228
MslI	CAYNNNNRTG	1 cut(s)	680
MspA1I	CMGCKG	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	227
MspI	CCGG	6 cut(s)	172, 251, 425, 451, 553, 611
MspR9I	CCNGG	3 cut(s)	251, 258, 426
MvaI	CCWGG	1 cut(s)	258
MvnI	CGCG	3 cut(s)	311, 371, 398
NciI	CCSGG	2 cut(s)	251, 426
NdeII	GATC	8 cut(s)	102, 159, 211, 362, 421, 462, 508, 657
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	5 cut(s)	176, 255, 423, 491, 551
NmeAIII	GCCGAG	2 cut(s)	162, 259
NsiI	ATGCAT	1 cut(s)	203
NspI	RCATGY	1 cut(s)	82
OliI	CACNNNNGTG	1 cut(s)	680
PciI	ACATGT	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	3 cut(s)	371, 648, 674
PfeI	GAWTC	1 cut(s)	376
PfoI	TCCNGGA	2 cut(s)	256, 424
PkrI	GCNGC	4 cut(s)	400, 439, 558, 561
PleI	GAGTC	1 cut(s)	392
PmaCI	CACGTG	1 cut(s)	678
PmlI	CACGTG	1 cut(s)	678
PpsI	GAGTC	1 cut(s)	392
Ppu21I	YACGTR	1 cut(s)	678
PscI	ACATGT	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	256
PspCI	CACGTG	1 cut(s)	678
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	5 cut(s)	176, 255, 423, 491, 551
PspPI	GGNCC	3 cut(s)	174, 268, 550
PstI	CTGCAG	1 cut(s)	564
PsuI	RGATCY	4 cut(s)	159, 421, 508, 657
RsaI	GTAC	5 cut(s)	308, 320, 406, 491, 521
RsaNI	GTAC	5 cut(s)	307, 319, 405, 490, 520
RseI	CAYNNNNRTG	1 cut(s)	680
SaqAI	TTAA	2 cut(s)	66, 228
SatI	GCNGC	4 cut(s)	399, 438, 557, 560
Sau3AI	GATC	8 cut(s)	102, 159, 211, 362, 421, 462, 508, 657
Sau96I	GGNCC	3 cut(s)	174, 268, 550
SchI	GAGTC	1 cut(s)	393
ScrFI	CCNGG	3 cut(s)	251, 258, 426
SduI	GDGCHC	1 cut(s)	356
SfaNI	GCATC	1 cut(s)	690
SfcI	CTRYAG	1 cut(s)	560
SinI	GGWCC	3 cut(s)	174, 268, 550
SmiMI	CAYNNNNRTG	1 cut(s)	680
SmlI	CTYRAG	2 cut(s)	227, 568
SmoI	CTYRAG	2 cut(s)	227, 568
Sse9I	AATT	2 cut(s)	16, 335
StyD4I	CCNGG	3 cut(s)	249, 256, 424
TaaI	ACNGT	2 cut(s)	241, 494
TaiI	ACGT	3 cut(s)	488, 548, 680
TaqI	TCGA	6 cut(s)	41, 333, 358, 365, 379, 651
TasI	AATT	2 cut(s)	16, 335
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	2 cut(s)	401, 440
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	2 cut(s)	66, 228
Tru9I	TTAA	2 cut(s)	66, 228
TscAI	CASTG	1 cut(s)	569
TseI	GCWGC	2 cut(s)	556, 559
TspDTI	ATGAA	1 cut(s)	308
TspRI	CASTG	1 cut(s)	569
Vha464I	CTTAAG	1 cut(s)	227
VpaK11BI	GGWCC	3 cut(s)	174, 268, 550
XceI	RCATGY	1 cut(s)	82
Zsp2I	ATGCAT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.