Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012674.1

Orthogroup ID

OG0007697

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 582

Gene Structure 581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012674.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 581 bp

atggatgaggctaccaacacccctaaggcattaaagactcctaaggctttagggacccccaagggcaatgtgacggatccattcgaaaatcaaaaggaagattccgaggagaacaaaaagcagggacaagagaatgctgatcagaaggaggaagagaaggacagtaccggtggcgaacacagcggtccccttgagcctgttgagataccggaagatccccatcccaccctcgaaaagctttgtgatgacattgagcgatgcatctcttcattgcctacgcctaacgagaaagatgaaaaccaacaagaagagaaggataatgcaaatgatgaggcaaaagatacaaaaggtgatgagaatgatgggaaggatacaaaagatgacaaggaagaaaaggatgtaaaagatgagaagggtgaaaaggaagaagagaagggtgagaaagatgcaaaggagggtgaaaagaatgacaaggaagaaaaggatgtgaaggatgagaacaaggatgatgaaaaggctgcagatcaggatgagaaagaattaggtgacaaagatgcaaaggatgagaaagaggctgaaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

193

Amino Acids

21.68

Weight (kDa)

4.35

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13990
fragaria_vesca	FvH4_6g53940
malus_domestica	MD00G1220500.v1.1 MD09G1007100.v1.1 MD10G1123900.v1.1 MD10G1124000.v1.1 MD17G1010900.v1.1 MD17G1254300.v1.1
prunus_persica	Prupe.3G310000_v2.0.a1
pyrus_communis	pycom111g00530 pycom17g00560
rosa_chinensis	RchiOBHm_Chr2g0176101
rosa_laevigata	RLG00000022381
rosa_multiflora	Rmu_co8050736.1_g000001 Rmu_sc0009879.1_g000001 Rmu_sc0012674.1_g000001 Rmu_sc0041131.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076770
rosa_rugosa	Rorug02G0590700
rosa_samantha	Rh2AG669300 Rh2BG680900 Rh2CG643800 Rh2DG694600
rosa_wichuraiana	Rw2G054900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	183
AclWI	GGATC	3 cut(s)	71, 84, 209
AfaI	GTAC	1 cut(s)	166
AgeI	ACCGGT	1 cut(s)	167
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
AlwI	GGATC	3 cut(s)	71, 84, 209
ApeKI	GCWGC	1 cut(s)	518
AsiGI	ACCGGT	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	54, 185
AsuHPI	GGTGA	5 cut(s)	362, 428, 449, 470, 557
AsuII	TTCGAA	1 cut(s)	84
AvaII	GGWCC	2 cut(s)	54, 185
AxyI	CCTNAGG	2 cut(s)	24, 42
BamHI	GGATCC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	2 cut(s)	228, 356
BciVI	GTATCC	1 cut(s)	364
BclI	TGATCA	1 cut(s)	139
BfmI	CTRYAG	1 cut(s)	519
BfuI	GTATCC	1 cut(s)	364
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
Bme18I	GGWCC	2 cut(s)	54, 185
BmgT120I	GGNCC	2 cut(s)	54, 185
BmiI	GGNNCC	4 cut(s)	55, 56, 78, 187
BmsI	GCATC	4 cut(s)	248, 270, 436, 544
Bpu14I	TTCGAA	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	212
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	60, 105
BsaWI	WCCGGW	2 cut(s)	167, 208
Bse118I	RCCGGY	1 cut(s)	167
Bse21I	CCTNAGG	2 cut(s)	24, 42
Bse3DI	GCAATG	2 cut(s)	73, 269
Bse8I	GATNNNNATC	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	60, 105
BseGI	GGATG	8 cut(s)	10, 220, 403, 490, 499, 511, 535, 568
BseJI	GATNNNNATC	1 cut(s)	219
BseMI	GCAATG	2 cut(s)	73, 269
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	505
BshTI	ACCGGT	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	168, 209
BslFI	GGGAC	3 cut(s)	67, 138, 171
BsmFI	GGGAC	3 cut(s)	67, 138, 171
BsmI	GAATGC	1 cut(s)	139
Bsp119I	TTCGAA	1 cut(s)	84
Bsp143I	GATC	4 cut(s)	76, 139, 214, 523
BspACI	CCGC	1 cut(s)	183
BspLI	GGNNCC	4 cut(s)	55, 56, 78, 187
BspMAI	CTGCAG	1 cut(s)	523
BspPI	GGATC	3 cut(s)	71, 84, 209
BspT104I	TTCGAA	1 cut(s)	84
BsrDI	GCAATG	2 cut(s)	73, 269
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	60, 105
BssMI	GATC	4 cut(s)	76, 139, 214, 523
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	4 cut(s)	147, 271, 303, 423
BstBI	TTCGAA	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	24, 42
BstF5I	GGATG	8 cut(s)	10, 220, 403, 490, 499, 511, 535, 568
BstKTI	GATC	4 cut(s)	79, 142, 217, 526
BstMBI	GATC	4 cut(s)	76, 139, 214, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	505
BstX2I	RGATCY	2 cut(s)	76, 214
BstYI	RGATCY	2 cut(s)	76, 214
Bsu36I	CCTNAGG	2 cut(s)	24, 42
BsuI	GTATCC	1 cut(s)	364
BtgZI	GCGATG	1 cut(s)	271
BtsCI	GGATG	8 cut(s)	10, 220, 403, 490, 499, 511, 535, 568
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	54, 185
Csp6I	GTAC	1 cut(s)	165
CspAI	ACCGGT	1 cut(s)	167
CviJI	RGCY	6 cut(s)	11, 47, 196, 238, 518, 575
CviKI_1	RGCY	6 cut(s)	11, 47, 196, 238, 518, 575
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	2 cut(s)	24, 42
DpnI	GATC	4 cut(s)	78, 141, 216, 525
DpnII	GATC	4 cut(s)	76, 139, 214, 523
Eam1104I	CTCTTC	4 cut(s)	147, 271, 303, 423
EarI	CTCTTC	4 cut(s)	147, 271, 303, 423
Eco130I	CCWWGG	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	54, 185
Eco81I	CCTNAGG	2 cut(s)	24, 42
EcoO109I	RGGNCCY	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	60
FaqI	GGGAC	3 cut(s)	67, 138, 171
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	8 cut(s)	17, 207, 410, 497, 506, 518, 542, 575
Fsp4HI	GCNGC	1 cut(s)	519
GluI	GCNGC	1 cut(s)	519
HapII	CCGG	2 cut(s)	168, 209
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	2 cut(s)	37, 101
HpaII	CCGG	2 cut(s)	168, 209
HphI	GGTGA	5 cut(s)	362, 428, 449, 470, 557
Hpy188I	TCNGA	2 cut(s)	106, 144
Hpy188III	TCNNGA	1 cut(s)	527
HpyAV	CCTTC	7 cut(s)	139, 151, 307, 361, 406, 427, 484
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4V	TGCA	5 cut(s)	261, 323, 449, 521, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	2 cut(s)	24, 42
KflI	GGGWCCC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	76, 139, 214, 523
LpnPI	CCDG	5 cut(s)	107, 181, 210, 222, 512
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	4 cut(s)	248, 270, 436, 544
MaeIII	GTNAC	2 cut(s)	70, 545
MalI	GATC	4 cut(s)	78, 141, 216, 525
MboI	GATC	4 cut(s)	76, 139, 214, 523
MboII	GAAGA	9 cut(s)	110, 164, 224, 258, 320, 401, 437, 440, 488
MflI	RGATCY	2 cut(s)	76, 214
MluCI	AATT	1 cut(s)	539
MlyI	GAGTC	1 cut(s)	31
MnlI	CCTC	6 cut(s)	100, 142, 239, 325, 448, 565
Mph1103I	ATGCAT	1 cut(s)	263
MseI	TTAA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	2 cut(s)	168, 209
Mva1269I	GAATGC	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	180
NdeII	GATC	4 cut(s)	76, 139, 214, 523
NlaIV	GGNNCC	4 cut(s)	55, 56, 78, 187
NmuCI	GTSAC	2 cut(s)	70, 545
NsiI	ATGCAT	1 cut(s)	263
NspV	TTCGAA	1 cut(s)	84
PctI	GAATGC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	101
PinAI	ACCGGT	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	520
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PpuMI	RGGWCCY	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	54
PspN4I	GGNNCC	4 cut(s)	55, 56, 78, 187
PspPI	GGNCC	2 cut(s)	54, 185
PspPPI	RGGWCCY	1 cut(s)	54
PstI	CTGCAG	1 cut(s)	523
PsuI	RGATCY	2 cut(s)	76, 214
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	4 cut(s)	76, 139, 214, 523
Sau96I	GGNCC	2 cut(s)	54, 185
SchI	GAGTC	1 cut(s)	31
SetI	ASST	3 cut(s)	240, 352, 547
SfaNI	GCATC	4 cut(s)	248, 270, 436, 544
SfcI	CTRYAG	1 cut(s)	519
SfuI	TTCGAA	1 cut(s)	84
SinI	GGWCC	2 cut(s)	54, 185
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	539
SsiI	CCGC	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	164
TaqI	TCGA	2 cut(s)	84, 231
TasI	AATT	1 cut(s)	539
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TseFI	GTSAC	2 cut(s)	70, 545
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	2 cut(s)	70, 545
TspDTI	ATGAA	3 cut(s)	258, 309, 525
TspGWI	ACGGA	1 cut(s)	89
VpaK11BI	GGWCC	2 cut(s)	54, 185
Zsp2I	ATGCAT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.