Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007697

Physical Location & Seq

Genomic Coordinates Forward (+)

71330637 .. 71331656

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0590700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCCTCCATGGTATCGACCTGCTCAGTACTTCTACCAACGCCTCGTGCCCCCATGGTCGCGACCTGCTCAGTACTTCTACCAACGCCTCATCCTCGATTCCCTAACCCTAAACCTCCCAAGATCTTCCCTGATCTTATCCAAACAACGGCTTTCCCAAGATGCTTGAAGGTTCGGGAATCTAGGGTTTTGATACCCGTTATGAGAGCGAGCGTTGGCCCCTACAATAACAATTGTGGAAAACGTGACCATTGGAAGAGACCAGTGGTGCAAAATCATTCTGAGCTAGTTCCGGCGGCGGAAGTGTCCAGAAATAAGAACTCCCTGATGAAATTTGCTGATTCTATCTGGTCATTCGTTTTCGGCGACGGTAATCCAAACAAAGGAGTTCATGAAGAGAAGAGATGGAAGTTCATTGAGCAATACATAACCTCCAAGGGTGGTGTTATAGCAGCCGAAGAGCTTGCTCCTTATCTTGATGGTTTAGAAACTTTAGGGAAAATTGAGAGCAACCCAATCAATGAGAAAAAGTTCATGTTACCTGTTCTAAAAAGATATGAGGGCCATCCTGTAATTGATGAAGACGGGAACGTTCTCTACCGGTTTATGTCACTACAGCCCAAAGATAAGGAATTGCGTGACGTTGAGCATAAATTCTTCATGGAGAAGAAATGGCGATTCAGTAAGACTAGCTTTTTTGAGAGAGTAAAGGTCGTCTTATTTGGTTTAGTTCTCCGGGACGTCCTTTCTTATCTGACCAACGGGTGGTTACTTATGAAAAGCGGTAGTACTAAGTTATGGGGTGCCGTACTACTCCAGATTTCTATTATTTCTTTATTTGTATTGATTCCTTTGCTCAGGTTTGTGTTATTTGGCCTCATCTTTCTTTATAAAAATGCTCGCATTGAAAAACGGAACCGAGCACGACAACAGGCTGCTGAAGCACTTGAATCGCCTAATCTGCTGCTGAGACAAAAGATCGCCAGTGCTCGGAATATGGCTGGAATTCTGAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

339

Amino Acids

38.74

Weight (kDa)

9.92

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13990
fragaria_vesca	FvH4_6g53940
malus_domestica	MD00G1220500.v1.1 MD09G1007100.v1.1 MD10G1123900.v1.1 MD10G1124000.v1.1 MD17G1010900.v1.1 MD17G1254300.v1.1
prunus_persica	Prupe.3G310000_v2.0.a1
pyrus_communis	pycom111g00530 pycom17g00560
rosa_chinensis	RchiOBHm_Chr2g0176101
rosa_laevigata	RLG00000022381
rosa_multiflora	Rmu_co8050736.1_g000001 Rmu_sc0009879.1_g000001 Rmu_sc0012674.1_g000001 Rmu_sc0041131.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076770
rosa_rugosa	Rorug02G0590700
rosa_samantha	Rh2AG669300 Rh2BG680900 Rh2CG643800 Rh2DG694600
rosa_wichuraiana	Rw2G054900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	891
AatII	GACGTC	1 cut(s)	744
Acc36I	ACCTGC	2 cut(s)	29, 74
AccB1I	GGYRCC	1 cut(s)	803
AccB7I	CCANNNNNTGG	1 cut(s)	765
AccII	CGCG	1 cut(s)	62
AciI	CCGC	3 cut(s)	296, 299, 783
AclI	AACGTT	1 cut(s)	591
AcsI	RAATTY	3 cut(s)	332, 653, 1005
AcuI	CTGAAG	1 cut(s)	960
AcyI	GRCGYC	1 cut(s)	741
AfaI	GTAC	5 cut(s)	30, 75, 790, 810, 1016
AfiI	CCNNNNNNNGG	4 cut(s)	148, 383, 765, 990
AgeI	ACCGGT	1 cut(s)	600
AgsI	TTSAA	3 cut(s)	169, 908, 950
AluBI	AGCT	3 cut(s)	286, 463, 693
AluI	AGCT	3 cut(s)	286, 463, 693
Alw21I	GWGCWC	2 cut(s)	925, 991
Alw26I	GTCTC	2 cut(s)	253, 964
AoxI	GGCC	4 cut(s)	3, 217, 562, 874
ApeKI	GCWGC	3 cut(s)	452, 935, 964
ApoI	RAATTY	3 cut(s)	332, 653, 1005
AsiGI	ACCGGT	1 cut(s)	600
Asp700I	GAANNNNTTC	1 cut(s)	530
AspS9I	GGNCC	2 cut(s)	218, 562
AsuC2I	CCSGG	1 cut(s)	737
BaeGI	GKGCMC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	803
BauI	CACGAG	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	588
Bbv12I	GWGCWC	2 cut(s)	925, 991
BbvI	GCAGC	3 cut(s)	464, 922, 951
BccI	CCATC	3 cut(s)	399, 473, 573
BceAI	ACGGC	2 cut(s)	165, 791
BcgI	CGANNNNNNTGC	4 cut(s)	446, 480, 933, 967
BcnI	CCSGG	1 cut(s)	737
BcoDI	GTCTC	2 cut(s)	253, 964
BfaI	CTAG	3 cut(s)	183, 287, 690
BfmI	CTRYAG	1 cut(s)	614
BfuAI	ACCTGC	2 cut(s)	29, 74
BglII	AGATCT	1 cut(s)	123
BisI	GCNGC	4 cut(s)	297, 453, 936, 965
BlsI	GCNGC	4 cut(s)	298, 454, 937, 966
BmcAI	AGTACT	4 cut(s)	30, 75, 790, 1016
Bme1390I	CCNGG	1 cut(s)	737
BmgT120I	GGNCC	2 cut(s)	218, 562
BmiI	GGNNCC	3 cut(s)	220, 805, 917
BmrFI	CCNGG	1 cut(s)	737
BmsI	GCATC	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	588
BpmI	CTGGAG	1 cut(s)	800
Bpu10I	CCTNAGC	1 cut(s)	857
BpuMI	CCSGG	1 cut(s)	737
BsaHI	GRCGYC	1 cut(s)	741
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	3 cut(s)	9, 54, 435
BsaWI	WCCGGW	1 cut(s)	600
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 383, 765, 990
Bse118I	RCCGGY	1 cut(s)	600
Bse1I	ACTGG	2 cut(s)	263, 984
BseDI	CCNNGG	3 cut(s)	9, 54, 435
BseGI	GGATG	2 cut(s)	91, 565
BseLI	CCNNNNNNNGG	4 cut(s)	148, 383, 765, 990
BseMII	CTCAG	5 cut(s)	39, 84, 273, 871, 959
BseNI	ACTGG	2 cut(s)	263, 984
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	3 cut(s)	464, 922, 951
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	4 cut(s)	5, 219, 564, 876
BshNI	GGYRCC	1 cut(s)	803
BshTI	ACCGGT	1 cut(s)	600
BsiHKAI	GWGCWC	2 cut(s)	925, 991
BsiSI	CCGG	3 cut(s)	293, 601, 736
BslFI	GGGAC	1 cut(s)	752
BslI	CCNNNNNNNGG	4 cut(s)	148, 383, 765, 990
BsmAI	GTCTC	2 cut(s)	253, 964
BsmFI	GGGAC	1 cut(s)	752
BsnI	GGCC	4 cut(s)	5, 219, 564, 876
Bso31I	GGTCTC	1 cut(s)	253
Bsp1286I	GDGCHC	3 cut(s)	52, 925, 991
Bsp143I	GATC	3 cut(s)	123, 133, 978
Bsp19I	CCATGG	2 cut(s)	9, 54
Bsp68I	TCGCGA	1 cut(s)	62
BspACI	CCGC	3 cut(s)	296, 299, 783
BspANI	GGCC	4 cut(s)	5, 219, 564, 876
BspCNI	CTCAG	5 cut(s)	38, 83, 274, 870, 960
BspFNI	CGCG	1 cut(s)	62
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	3 cut(s)	220, 805, 917
BspMI	ACCTGC	2 cut(s)	29, 74
BspQI	GCTCTTC	1 cut(s)	453
BspT107I	GGYRCC	1 cut(s)	803
BspTNI	GGTCTC	1 cut(s)	253
BsrFI	RCCGGY	1 cut(s)	600
BsrI	ACTGG	2 cut(s)	263, 984
BssAI	RCCGGY	1 cut(s)	600
BssECI	CCNNGG	3 cut(s)	9, 54, 435
BssMI	GATC	3 cut(s)	123, 133, 978
BssNI	GRCGYC	1 cut(s)	741
BssSI	CACGAG	1 cut(s)	45
BssT1I	CCWWGG	3 cut(s)	9, 54, 435
Bst2BI	CACGAG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	371
Bst6I	CTCTTC	4 cut(s)	251, 390, 395, 453
BstACI	GRCGYC	1 cut(s)	741
BstC8I	GCNNGC	3 cut(s)	211, 465, 901
BstDEI	CTNAG	6 cut(s)	25, 70, 282, 792, 857, 968
BstDSI	CCRYGG	2 cut(s)	9, 54
BstF5I	GGATG	2 cut(s)	91, 565
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	3 cut(s)	126, 136, 981
BstMAI	GTCTC	2 cut(s)	253, 964
BstMBI	GATC	3 cut(s)	123, 133, 978
BstMWI	GCNNNNNNNGC	2 cut(s)	941, 961
BstSCI	CCNGG	1 cut(s)	735
BstSFI	CTRYAG	1 cut(s)	614
BstSLI	GKGCMC	1 cut(s)	52
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	3 cut(s)	464, 922, 951
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BsuRI	GGCC	4 cut(s)	5, 219, 564, 876
BtgI	CCRYGG	2 cut(s)	9, 54
BtsCI	GGATG	2 cut(s)	91, 565
BtsIMutI	CAGTG	2 cut(s)	270, 991
BtuMI	TCGCGA	1 cut(s)	62
BveI	ACCTGC	2 cut(s)	29, 74
Cac8I	GCNNGC	3 cut(s)	211, 465, 901
CciI	TCATGA	1 cut(s)	391
Cfr10I	RCCGGY	1 cut(s)	600
Cfr13I	GGNCC	2 cut(s)	218, 562
Csp6I	GTAC	5 cut(s)	29, 74, 789, 809, 1015
CspAI	ACCGGT	1 cut(s)	600
CviAII	CATG	5 cut(s)	10, 55, 392, 535, 661
CviQI	GTAC	5 cut(s)	29, 74, 789, 809, 1015
DdeI	CTNAG	6 cut(s)	25, 70, 282, 792, 857, 968
DpnI	GATC	3 cut(s)	125, 135, 980
DpnII	GATC	3 cut(s)	123, 133, 978
Eam1104I	CTCTTC	4 cut(s)	251, 390, 395, 453
EarI	CTCTTC	4 cut(s)	251, 390, 395, 453
EciI	GGCGGA	1 cut(s)	314
Eco130I	CCWWGG	3 cut(s)	9, 54, 435
Eco31I	GGTCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	960
EcoRI	GAATTC	1 cut(s)	1005
EcoT14I	CCWWGG	3 cut(s)	9, 54, 435
ErhI	CCWWGG	3 cut(s)	9, 54, 435
FaeI	CATG	5 cut(s)	13, 58, 395, 538, 664
FalI	AAGNNNNNCTT	4 cut(s)	677, 709, 701, 733
FaqI	GGGAC	1 cut(s)	752
FatI	CATG	5 cut(s)	9, 54, 391, 534, 660
Fnu4HI	GCNGC	4 cut(s)	297, 453, 936, 965
FokI	GGATG	2 cut(s)	78, 552
Fsp4HI	GCNGC	4 cut(s)	297, 453, 936, 965
FspBI	CTAG	3 cut(s)	183, 287, 690
GluI	GCNGC	4 cut(s)	297, 453, 936, 965
GsuI	CTGGAG	1 cut(s)	800
HaeIII	GGCC	4 cut(s)	5, 219, 564, 876
HapII	CCGG	3 cut(s)	293, 601, 736
Hin1I	GRCGYC	1 cut(s)	741
Hin1II	CATG	5 cut(s)	13, 58, 395, 538, 664
HinfI	GANTC	6 cut(s)	99, 179, 341, 678, 847, 950
HpaII	CCGG	3 cut(s)	293, 601, 736
Hpy188I	TCNGA	4 cut(s)	283, 756, 993, 1011
Hpy188III	TCNNGA	6 cut(s)	61, 176, 309, 392, 476, 817
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	4 cut(s)	244, 591, 642, 741
HpyCH4V	TGCA	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	2 cut(s)	941, 961
HpyF3I	CTNAG	6 cut(s)	25, 70, 282, 792, 857, 968
HpySE526I	ACGT	4 cut(s)	244, 591, 642, 741
Hsp92I	GRCGYC	1 cut(s)	741
Hsp92II	CATG	5 cut(s)	13, 58, 395, 538, 664
Kzo9I	GATC	3 cut(s)	123, 133, 978
LguI	GCTCTTC	1 cut(s)	453
LmnI	GCTCC	1 cut(s)	472
Lsp1109I	GCAGC	3 cut(s)	464, 922, 951
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	3 cut(s)	183, 287, 690
MaeII	ACGT	4 cut(s)	244, 591, 642, 741
MaeIII	GTNAC	5 cut(s)	245, 537, 609, 638, 768
MalI	GATC	3 cut(s)	125, 135, 980
MboI	GATC	3 cut(s)	123, 133, 978
MboII	GAAGA	8 cut(s)	118, 268, 407, 412, 470, 593, 649, 679
MfeI	CAATTG	1 cut(s)	232
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	3 cut(s)	52, 925, 991
MluCI	AATT	7 cut(s)	232, 332, 501, 573, 632, 653, 1005
MnlI	CCTC	8 cut(s)	16, 54, 99, 105, 126, 442, 553, 887
MroXI	GAANNNNTTC	1 cut(s)	530
MspI	CCGG	3 cut(s)	293, 601, 736
MspR9I	CCNGG	1 cut(s)	737
MunI	CAATTG	1 cut(s)	232
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	941, 961
NciI	CCSGG	1 cut(s)	737
NcoI	CCATGG	2 cut(s)	9, 54
NdeII	GATC	3 cut(s)	123, 133, 978
NlaIII	CATG	5 cut(s)	13, 58, 395, 538, 664
NlaIV	GGNNCC	3 cut(s)	220, 805, 917
NmuCI	GTSAC	3 cut(s)	245, 609, 638
NruI	TCGCGA	1 cut(s)	62
PagI	TCATGA	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	530
PfeI	GAWTC	6 cut(s)	99, 179, 341, 678, 847, 950
PflMI	CCANNNNNTGG	1 cut(s)	765
PfoI	TCCNGGA	1 cut(s)	735
PinAI	ACCGGT	1 cut(s)	600
PkrI	GCNGC	4 cut(s)	298, 454, 937, 966
PsiI	TTATAA	1 cut(s)	891
Psp1406I	AACGTT	1 cut(s)	591
PspN4I	GGNNCC	3 cut(s)	220, 805, 917
PspPI	GGNCC	2 cut(s)	218, 562
PsrI	GAACNNNNNNTAC	2 cut(s)	581, 613
PsuI	RGATCY	1 cut(s)	123
RruI	TCGCGA	1 cut(s)	62
RsaI	GTAC	5 cut(s)	30, 75, 790, 810, 1016
RsaNI	GTAC	5 cut(s)	29, 74, 789, 809, 1015
SapI	GCTCTTC	1 cut(s)	453
SatI	GCNGC	4 cut(s)	297, 453, 936, 965
Sau3AI	GATC	3 cut(s)	123, 133, 978
Sau96I	GGNCC	2 cut(s)	218, 562
ScaI	AGTACT	4 cut(s)	30, 75, 790, 1016
ScrFI	CCNGG	1 cut(s)	737
SduI	GDGCHC	3 cut(s)	52, 925, 991
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	1 cut(s)	614
Sse9I	AATT	7 cut(s)	232, 332, 501, 573, 632, 653, 1005
SsiI	CCGC	3 cut(s)	296, 299, 783
SspMI	CTAG	3 cut(s)	183, 287, 690
StyD4I	CCNGG	1 cut(s)	735
StyI	CCWWGG	3 cut(s)	9, 54, 435
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	4 cut(s)	247, 594, 645, 744
TaqI	TCGA	2 cut(s)	17, 97
TasI	AATT	7 cut(s)	232, 332, 501, 573, 632, 653, 1005
TatI	WGTACW	4 cut(s)	28, 73, 788, 1014
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	6 cut(s)	99, 179, 341, 678, 847, 950
TscAI	CASTG	2 cut(s)	270, 991
TseFI	GTSAC	3 cut(s)	245, 609, 638
TseI	GCWGC	3 cut(s)	452, 935, 964
Tsp45I	GTSAC	3 cut(s)	245, 609, 638
TspDTI	ATGAA	8 cut(s)	344, 380, 403, 408, 523, 594, 649, 791
TspGWI	ACGGA	1 cut(s)	928
TspRI	CASTG	2 cut(s)	270, 991
Van91I	CCANNNNNTGG	1 cut(s)	765
XapI	RAATTY	3 cut(s)	332, 653, 1005
XmnI	GAANNNNTTC	1 cut(s)	530
XspI	CTAG	3 cut(s)	183, 287, 690
ZraI	GACGTC	1 cut(s)	742
ZrmI	AGTACT	4 cut(s)	30, 75, 790, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.