MD11G1049900.v1.1

platelet degranulation

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
4275856 .. 4277236
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1049900.v1.1.491

Sequence Viewer

Length: 1275 bp
ATGGTGCTCATAGAACTTTATGGAAGTATTGAAGCTGGTTTCGGATACAAAGAAAGTCTCATGCGGTTCATTAAAAATTTGGGGCCAACAGCTCAAATGGTTGCTAAGAAGAAATTAGAAAGTCTACTTGCAGCTCAGAATTGCCAGCCCCTGGCAACCCCTCCAATTCAGAACCAAAATAATCCGGCTGTCACCCTATCTGCATCACCAGCACTTGGTCATCCTATTGGTGTTAATGGTTCTCAAATGGCTCAGATGCAACATAATTCCCTGGATAACTTGCCAAGGGATGTGAATGCTTCTTGTTTCCATGGCGATGCTTCTGCACAAGGATATGCCCCGGTTAGAGCCAGTGTATGCATCAATGAGGGTGCTTACAAGGGAAAGATGAATGCAGCCGACACATCCAGATTAGGCATGGAGGGTAATGTCATTGACCCGAAAGGGAAGGCACCCGAGGAACAAGATACTTATGACAGAACTTTCCCGAAACGGATGGCTATTGACATAAACAAAACCATGGACTTCACCAGTCTTCCCAATGGCATAAGACTTCACGGGAGCAACATTGAAGGCAGGCCTCATCAATATCAGAACGGAAACGTTCAGTTGGGGTCGCACATTTGCGTTGTTAGAGATTTGGGTGGTCCTGGGACAAACAGCATAAAGTTTAGGACTGTGGATATGCTAGCAGAACGTAACAATGTAGGAAACCTGCTGCAGCAGCTTCCGCAAGCTCCGATGTCTAGGACTGCATCAAATCAGTCGAGGCTGCAAGAGATCACGTCGAAAACTAACACCTATCTGAGGCCTTCACCTGCTCCTGAGCTGTCGAGTTTGACCCAGGCAACAACTTCCTTCAATGGTTCCGACACGCAACTCAATAGAAACTATGCAGCTAACTCTTTTCGTGCAGGTCAGCTTCCTCAAATGAACAACTATATAGCTAACTCTGCACAGGCAGGTCAGCACAAGCCTCAATTTAACTGTCCCAATGCGGCGCAAGGTGTGCAAGAAATGAGTAGCTTTCCGAGCATGAAACTGAAGCTTGGTGAGGATCATAGTGCATTGGCAAAGGATGGCATGTATATGAGGAGAGAACAAGGGGAGGTGTCGCTGGCGGCTCGGGGAATGATGAAGCCTCCTCCCTTGTACAATGCATTTGGTGGCCATGAAAGAGCTACAACTCCATGGTACCAAAAGGAGCCTACTCCTGAATCTTTTCTGCCCTGGCAGGTGGACTCTCAGCAGCCTAACTTGGCTCTTCAGCTGTGA

Protein Analysis

425

Amino Acids

46.26

Weight (kDa)

8.83

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016297)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 826, 1225
Acc36I ACCTGC 5 cut(s) 723, 826, 905, 953, 1225
Acc65I GGTACC 1 cut(s) 1194
AccB1I GGYRCC 2 cut(s) 451, 1194
AccB7I CCANNNNNTGG 2 cut(s) 151, 215
AccI GTMKAC 1 cut(s) 124
AciI CCGC 4 cut(s) 64, 731, 998, 1121
AclI AACGTT 1 cut(s) 603
AclWI GGATC 1 cut(s) 1065
AcoI YGGCCR 1 cut(s) 1168
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 2 cut(s) 1064, 1250
AfaI GTAC 2 cut(s) 1154, 1196
AfiI CCNNNNNNNGG 3 cut(s) 151, 215, 807
AgsI TTSAA 3 cut(s) 32, 572, 862
AjiI CACGTC 1 cut(s) 786
AjnI CCWGG 5 cut(s) 150, 270, 649, 843, 1229
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 1065
AlwNI CAGNNNCTG 1 cut(s) 151
Ama87I CYCGRG 2 cut(s) 455, 1125
AoxI GGCC 4 cut(s) 83, 578, 809, 1168
ApeKI GCWGC 8 cut(s) 131, 395, 718, 721, 724, 772, 896, 1249
ApoI RAATTY 1 cut(s) 76
Asp700I GAANNNNTTC 1 cut(s) 1221
Asp718I GGTACC 1 cut(s) 1194
AspLEI GCGC 1 cut(s) 1003
AspS9I GGNCC 2 cut(s) 83, 647
AsuC2I CCSGG 1 cut(s) 341
AsuHPI GGTGA 5 cut(s) 184, 198, 520, 807, 1064
AsuNHI GCTAGC 1 cut(s) 688
AvaI CYCGRG 2 cut(s) 455, 1125
AvaII GGWCC 1 cut(s) 647
BalI TGGCCA 1 cut(s) 1170
BanI GGYRCC 2 cut(s) 451, 1194
BbsI GAAGAC 1 cut(s) 527
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 8 cut(s) 143, 407, 705, 733, 736, 759, 908, 1261
BccI CCATC 2 cut(s) 490, 1073
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 5 cut(s) 152, 272, 651, 845, 1231
BciVI GTATCC 1 cut(s) 38
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 2 cut(s) 689, 747
BfmI CTRYAG 1 cut(s) 719
BfuAI ACCTGC 5 cut(s) 723, 826, 905, 953, 1225
BfuI GTATCC 1 cut(s) 38
Bme1390I CCNGG 6 cut(s) 152, 272, 341, 651, 845, 1231
Bme18I GGWCC 1 cut(s) 647
BmeT110I CYCGRG 2 cut(s) 455, 1125
BmgBI CACGTC 1 cut(s) 786
BmgT120I GGNCC 2 cut(s) 83, 647
BmiI GGNNCC 5 cut(s) 84, 453, 868, 1196, 1206
BmrFI CCNGG 6 cut(s) 152, 272, 341, 651, 845, 1231
BmsI GCATC 5 cut(s) 212, 246, 307, 369, 764
BmtI GCTAGC 1 cut(s) 692
BpiI GAAGAC 1 cut(s) 527
Bpu10I CCTNAGC 1 cut(s) 825
BpuMI CCSGG 1 cut(s) 341
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 215, 807
Bse1I ACTGG 2 cut(s) 351, 531
BseBI CCWGG 5 cut(s) 152, 272, 651, 845, 1231
BseGI GGATG 5 cut(s) 220, 295, 404, 501, 1084
BseLI CCNNNNNNNGG 3 cut(s) 151, 215, 807
BseMII CTCAG 5 cut(s) 149, 266, 797, 816, 1259
BseNI ACTGG 2 cut(s) 351, 531
BseRI GAGGAG 2 cut(s) 1108, 1134
BseXI GCAGC 8 cut(s) 143, 407, 705, 733, 736, 759, 908, 1261
BsgI GTGCAG 3 cut(s) 309, 933, 939
BshFI GGCC 4 cut(s) 85, 580, 811, 1170
BshNI GGYRCC 2 cut(s) 451, 1194
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 2 cut(s) 455, 1125
BsiSI CCGG 2 cut(s) 185, 341
BslFI GGGAC 2 cut(s) 667, 975
BslI CCNNNNNNNGG 3 cut(s) 151, 215, 807
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 2 cut(s) 667, 975
BsmI GAATGC 2 cut(s) 301, 397
BsnI GGCC 4 cut(s) 85, 580, 811, 1170
BsoBI CYCGRG 2 cut(s) 455, 1125
Bsp1286I GDGCHC 1 cut(s) 9
Bsp1407I TGTACA 1 cut(s) 1152
Bsp143I GATC 2 cut(s) 780, 1057
Bsp19I CCATGG 3 cut(s) 310, 519, 1190
BspACI CCGC 4 cut(s) 64, 731, 998, 1121
BspANI GGCC 4 cut(s) 85, 580, 811, 1170
BspCNI CTCAG 5 cut(s) 148, 265, 798, 817, 1258
BspLI GGNNCC 5 cut(s) 84, 453, 868, 1196, 1206
BspMAI CTGCAG 1 cut(s) 723
BspMI ACCTGC 5 cut(s) 723, 826, 905, 953, 1225
BspOI GCTAGC 1 cut(s) 692
BspPI GGATC 1 cut(s) 1065
BspQI GCTCTTC 1 cut(s) 1269
BspT107I GGYRCC 2 cut(s) 451, 1194
BsrGI TGTACA 1 cut(s) 1152
BsrI ACTGG 2 cut(s) 351, 531
BssMI GATC 2 cut(s) 780, 1057
BssT1I CCWWGG 4 cut(s) 284, 310, 519, 1190
Bst2UI CCWGG 5 cut(s) 152, 272, 651, 845, 1231
Bst4CI ACNGT 2 cut(s) 679, 989
Bst6I CTCTTC 1 cut(s) 1269
BstAPI GCANNNNNTGC 1 cut(s) 1009
BstAUI TGTACA 1 cut(s) 1152
BstC8I GCNNGC 5 cut(s) 146, 578, 690, 735, 1119
BstDEI CTNAG 6 cut(s) 105, 135, 252, 806, 825, 1245
BstDSI CCRYGG 3 cut(s) 310, 519, 1190
BstENI CCTNNNNNAGG 1 cut(s) 805
BstF5I GGATG 5 cut(s) 220, 295, 404, 501, 1084
BstHHI GCGC 1 cut(s) 1003
BstKTI GATC 2 cut(s) 783, 1060
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 2 cut(s) 780, 1057
BstMWI GCNNNNNNNGC 6 cut(s) 209, 724, 730, 953, 1009, 1032
BstNI CCWGG 5 cut(s) 152, 272, 651, 845, 1231
BstNSI RCATGY 1 cut(s) 1087
BstSCI CCNGG 6 cut(s) 150, 270, 339, 649, 843, 1229
BstSFI CTRYAG 1 cut(s) 719
BstV1I GCAGC 8 cut(s) 143, 407, 705, 733, 736, 759, 908, 1261
BstV2I GAAGAC 1 cut(s) 527
BsuI GTATCC 1 cut(s) 38
BsuRI GGCC 4 cut(s) 85, 580, 811, 1170
BtgI CCRYGG 3 cut(s) 310, 519, 1190
BtgZI GCGATG 1 cut(s) 330
BtrI CACGTC 1 cut(s) 786
BtsCI GGATG 5 cut(s) 220, 295, 404, 501, 1084
BtsIMutI CAGTG 1 cut(s) 358
BveI ACCTGC 5 cut(s) 723, 826, 905, 953, 1225
Cac8I GCNNGC 5 cut(s) 146, 578, 690, 735, 1119
CaiI CAGNNNCTG 1 cut(s) 151
CfoI GCGC 1 cut(s) 1003
Cfr13I GGNCC 2 cut(s) 83, 647
Csp6I GTAC 2 cut(s) 1153, 1195
CviAII CATG 8 cut(s) 61, 311, 418, 520, 1036, 1084, 1172, 1191
CviQI GTAC 2 cut(s) 1153, 1195
DdeI CTNAG 6 cut(s) 105, 135, 252, 806, 825, 1245
DpnI GATC 2 cut(s) 782, 1059
DpnII GATC 2 cut(s) 780, 1057
EaeI YGGCCR 1 cut(s) 1168
Eam1104I CTCTTC 1 cut(s) 1269
EarI CTCTTC 1 cut(s) 1269
Eco130I CCWWGG 4 cut(s) 284, 310, 519, 1190
Eco147I AGGCCT 2 cut(s) 580, 811
Eco47I GGWCC 1 cut(s) 647
Eco57I CTGAAG 2 cut(s) 1064, 1250
Eco88I CYCGRG 2 cut(s) 455, 1125
EcoNI CCTNNNNNAGG 1 cut(s) 805
EcoRII CCWGG 5 cut(s) 150, 270, 649, 843, 1229
EcoT14I CCWWGG 4 cut(s) 284, 310, 519, 1190
EcoT22I ATGCAT 2 cut(s) 362, 1162
ErhI CCWWGG 4 cut(s) 284, 310, 519, 1190
FaeI CATG 8 cut(s) 64, 314, 421, 523, 1039, 1087, 1175, 1194
FaqI GGGAC 2 cut(s) 667, 975
FatI CATG 8 cut(s) 60, 310, 417, 519, 1035, 1083, 1171, 1190
FblI GTMKAC 1 cut(s) 124
FokI GGATG 5 cut(s) 207, 302, 391, 508, 1091
FspBI CTAG 2 cut(s) 689, 747
GlaI GCGC 1 cut(s) 1002
HaeIII GGCC 4 cut(s) 85, 580, 811, 1170
HapII CCGG 2 cut(s) 185, 341
HhaI GCGC 1 cut(s) 1003
Hin1II CATG 8 cut(s) 64, 314, 421, 523, 1039, 1087, 1175, 1194
Hin6I GCGC 1 cut(s) 1001
HinP1I GCGC 1 cut(s) 1001
HindIII AAGCTT 1 cut(s) 1046
HinfI GANTC 2 cut(s) 1217, 1241
HpaII CCGG 2 cut(s) 185, 341
HphI GGTGA 5 cut(s) 184, 198, 520, 807, 1064
Hpy166II GTNNAC 2 cut(s) 125, 1240
Hpy188I TCNGA 9 cut(s) 44, 138, 171, 255, 594, 741, 807, 871, 1032
Hpy188III TCNNGA 4 cut(s) 408, 487, 824, 1214
Hpy8I GTNNAC 2 cut(s) 125, 1240
Hpy99I CGWCG 1 cut(s) 790
HpyAV CCTTC 4 cut(s) 442, 566, 822, 868
HpyCH4III ACNGT 2 cut(s) 679, 989
HpyCH4IV ACGT 3 cut(s) 603, 697, 785
HpyF10VI GCNNNNNNNGC 6 cut(s) 209, 724, 730, 953, 1009, 1032
HpyF3I CTNAG 6 cut(s) 105, 135, 252, 806, 825, 1245
HpySE526I ACGT 3 cut(s) 603, 697, 785
Hsp92II CATG 8 cut(s) 64, 314, 421, 523, 1039, 1087, 1175, 1194
HspAI GCGC 1 cut(s) 1001
KpnI GGTACC 1 cut(s) 1198
Kzo9I GATC 2 cut(s) 780, 1057
LguI GCTCTTC 1 cut(s) 1269
LmnI GCTCC 4 cut(s) 561, 742, 826, 1204
Lsp1109I GCAGC 8 cut(s) 143, 407, 705, 733, 736, 759, 908, 1261
LweI GCATC 5 cut(s) 212, 246, 307, 369, 764
MaeI CTAG 2 cut(s) 689, 747
MaeII ACGT 3 cut(s) 603, 697, 785
MaeIII GTNAC 2 cut(s) 190, 698
MalI GATC 2 cut(s) 782, 1059
MboI GATC 2 cut(s) 780, 1057
MboII GAAGA 3 cut(s) 121, 527, 1256
MhlI GDGCHC 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 1170
MluCI AATT 6 cut(s) 76, 113, 139, 165, 265, 980
MluNI TGGCCA 1 cut(s) 1170
MlyI GAGTC 1 cut(s) 1235
MmeI TCCRAC 1 cut(s) 894
Mox20I TGGCCA 1 cut(s) 1170
Mph1103I ATGCAT 2 cut(s) 362, 1162
MroXI GAANNNNTTC 1 cut(s) 1221
MscI TGGCCA 1 cut(s) 1170
MseI TTAA 3 cut(s) 72, 234, 984
MslI CAYNNNNRTG 2 cut(s) 315, 1088
Msp20I TGGCCA 1 cut(s) 1170
MspA1I CMGCKG 1 cut(s) 1270
MspI CCGG 2 cut(s) 185, 341
MspR9I CCNGG 6 cut(s) 152, 272, 341, 651, 845, 1231
Mva1269I GAATGC 2 cut(s) 301, 397
MvaI CCWGG 5 cut(s) 152, 272, 651, 845, 1231
MwoI GCNNNNNNNGC 6 cut(s) 209, 724, 730, 953, 1009, 1032
NciI CCSGG 1 cut(s) 341
NcoI CCATGG 3 cut(s) 310, 519, 1190
NdeII GATC 2 cut(s) 780, 1057
NheI GCTAGC 1 cut(s) 688
NlaIII CATG 8 cut(s) 64, 314, 421, 523, 1039, 1087, 1175, 1194
NlaIV GGNNCC 5 cut(s) 84, 453, 868, 1196, 1206
NmuCI GTSAC 1 cut(s) 190
NsiI ATGCAT 2 cut(s) 362, 1162
NspI RCATGY 1 cut(s) 1087
PaqCI CACCTGC 2 cut(s) 826, 1225
PceI AGGCCT 2 cut(s) 580, 811
PciSI GCTCTTC 1 cut(s) 1269
PctI GAATGC 2 cut(s) 301, 397
PdmI GAANNNNTTC 1 cut(s) 1221
PfeI GAWTC 1 cut(s) 1217
PflMI CCANNNNNTGG 2 cut(s) 151, 215
PleI GAGTC 1 cut(s) 1235
PpsI GAGTC 1 cut(s) 1235
Psp1406I AACGTT 1 cut(s) 603
Psp6I CCWGG 5 cut(s) 150, 270, 649, 843, 1229
PspGI CCWGG 5 cut(s) 150, 270, 649, 843, 1229
PspN4I GGNNCC 5 cut(s) 84, 453, 868, 1196, 1206
PspPI GGNCC 2 cut(s) 83, 647
PstI CTGCAG 1 cut(s) 723
PstNI CAGNNNCTG 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 1270
RsaI GTAC 2 cut(s) 1154, 1196
RsaNI GTAC 2 cut(s) 1153, 1195
RseI CAYNNNNRTG 2 cut(s) 315, 1088
SapI GCTCTTC 1 cut(s) 1269
SaqAI TTAA 3 cut(s) 72, 234, 984
Sau3AI GATC 2 cut(s) 780, 1057
Sau96I GGNCC 2 cut(s) 83, 647
SchI GAGTC 1 cut(s) 1235
ScrFI CCNGG 6 cut(s) 152, 272, 341, 651, 845, 1231
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 5 cut(s) 212, 246, 307, 369, 764
SfcI CTRYAG 1 cut(s) 719
SinI GGWCC 1 cut(s) 647
SmiMI CAYNNNNRTG 2 cut(s) 315, 1088
Sse9I AATT 6 cut(s) 76, 113, 139, 165, 265, 980
SseBI AGGCCT 2 cut(s) 580, 811
SsiI CCGC 4 cut(s) 64, 731, 998, 1121
SspMI CTAG 2 cut(s) 689, 747
StuI AGGCCT 2 cut(s) 580, 811
StyD4I CCNGG 6 cut(s) 150, 270, 339, 649, 843, 1229
StyI CCWWGG 4 cut(s) 284, 310, 519, 1190
TaaI ACNGT 2 cut(s) 679, 989
TaiI ACGT 3 cut(s) 606, 700, 788
TaqI TCGA 3 cut(s) 767, 788, 833
TasI AATT 6 cut(s) 76, 113, 139, 165, 265, 980
TatI WGTACW 1 cut(s) 1152
TauI GCSGC 2 cut(s) 1001, 1124
TfiI GAWTC 1 cut(s) 1217
Tru1I TTAA 3 cut(s) 72, 234, 984
Tru9I TTAA 3 cut(s) 72, 234, 984
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 8 cut(s) 131, 395, 718, 721, 724, 772, 896, 1249
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 6 cut(s) 58, 404, 947, 1052, 1151, 1188
TspGWI ACGGA 2 cut(s) 508, 612
TspRI CASTG 1 cut(s) 358
Van91I CCANNNNNTGG 2 cut(s) 151, 215
VpaK11BI GGWCC 1 cut(s) 647
XagI CCTNNNNNAGG 1 cut(s) 805
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 1087
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 1221
XspI CTAG 2 cut(s) 689, 747
Zsp2I ATGCAT 2 cut(s) 362, 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.