Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016297

Physical Location & Seq

Genomic Coordinates Reverse (-)

73931703 .. 73935939

Gene Structure 4237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG528600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3180 bp

ATGGAAAGTGGAGGTGAGGTAAAACGAAGAAAGAGTGCCCGAATTTCAGCATTAGAGGAGGAAAAGAGGAAAAAAGCATGCACCGTAGAAAGTGACAATGTTAGCGAGGATCAGACTCATGTTAGAAGAGGAACTTCTACAGGCAGAAGGGGCCGCAAGCGAAAAAGACTTGAAGATGTTGGCCTATCATCTCCACAGGATAGTGAAGACCCAAAAGATGAAGATTATTCGATCTACGAGGATGAAGCAGCATATCTGTCATATATACAGGAGGAGCCTGAAACTCGGATACTTGAGTTTATCCTTGATATACTGCAAAGGAGGGACACATGCAACTTATTCACAAAGCCTGTTGACCCTCAAGAGGTTAGTTACACTAGATTTCTAAAATCTCATTTTCAGATGTTTTGTTCCTTATTCAAAACACTGATCTATTACTTGCTTTTGAAGGTTTGGACCTATTACAGGATTATTAAAGAGCCAATGGATTTTGGAACCATAAGGACAAAACTTCAGGAAGGAAAATATAAAAACTTACAACAGTTTGAGCATGATGTGCTTCTAATATCCGCCAATGCAATGCACTTCAATTCATCGACCACCGTTTTTTACCAAGAGGCTCGAGCTATACAAGAGCTAGCGCAGCAGCTTTTCCAATCTCTAAGAGCTGATCCAGAACAGTTTCAGTTACAATTCTTACTGACAAAAAGAGGCCCCGGTAGGAAGCCGCAAAATCAAGGCAGAGGTTCACATAGAAGCGTTCCTAGACCAGTTGGCCGACCGAGTTCCTCGCGTGGTCCATATGTTAGAAGGAAAAGTCAAGCAGGCTCATCTAATGCAAACTCTTCCGGAATGAGAAATGGTAGAAACTCGAACTTAATGGAATCAGAGAGGCGTGAAACTTATAGGCTTTCGGATGAGGATAAATCACTATTATCAGTTGTCCATGATTCTGCAAAGATACTTCTTCATGTTGATAATGGTGATTCTGGATATAAAGAAAGTTTGATGCAGTTTGCTAAAAATTTGGGGCCAACAGCTCAAATGCTAGCCGAAAGTAAGTTGGTACAAGCTTTCAGCCAACCTCCGAATTGCCAGCCTCAAGCCACTCATCCAATACAAACCCAGAACTACATGGCTCCTGCTCCAGTCCTAGCTTTGCCAGCACCAGAGGTACCTGGTCGCCTTCTCGATGCTAACAATGGTCACATACATCGTAGTTCAAGTGAAAGTAAGTTGGCACAAGCTTTCAGCCAACCTCCGAATTGCCAGCCTCAAGCCAACTATCCAATACAGAGCCAAAACTACATGGCTCCTGCACCAGTCCTAGCTTTGCCAGCACCAGAGGTACCTGGTCACCTTCTCGATGGTAACAATGGTCAATTACATCGTGGTTCCCCATATTACTTGCCCAACAGTGATTCAAGTGCTTCATATTTTCACGGTGATGCTTCTGCACAAGGATATGCAAGAGCCAGCAACGGTGGTATACATATCAATGACAGTGCTAACAGGAGAAACATGAACCCTCCTAGCACATCCCAGTTAGGCATGGTTCAGAACTATCGTGACAAGGGAAAAATGGTTGTTGATCTAAATCAAAACATGGAGCTCGTAGGGACTGGTGATACAGAAGCCAGGGCCCATTCTCAAAATGTAAACAGCAATGTTCGGTTGGAGTCACATATCCGTGTTGTTAGAGATTTCAGTAGTCCTGGGACTTCAAGCAGTGGCATGAAGTTCAGGGCTGTGGACATGTTGGGCAAGCCTAACCCCCTAGAAAACCAGCAGCAGTTTCAGCAAGCTCATCAGTTGCCTAGTAGTACTGGGACTTCAAACAGTGGCATACTCTCTTGGGCTGTGAATAGGTTGGCCAATACTAGTCACCAGGAAAACCAGCAGCTTCAGCCAGCACAGTTGTCTAGTACTGGATCATCCAACCAGTCAAGTTTACTAGAGATCATGGCCGGAAGAAGTACCTATTTGAAGCCATCATCATCTTCGTTGCGCTCTTCATCTGCAATGTTATCAAGTTTGAGTGAGGCATCAACCTCCTGGAATGATTTTGGCTCACACCTGAACAACAACAATGCAGCTAAATCTGCACAGACAGGTCAGCAGCTTCAATGGAGCCAACGCAGTGCAGAACAAGATCTGCAAGAAAATTGTAGCTTTCTAGACATGCTTGGTGACGGCTGTAACCCATGGGACAAGAGTAGTACACTTCTGAAAAACGAACAACATCTTGATGACGTTAATTATTCTTTGGGGAGTAATGCATTTATGAGAAATGAACAACAGCTTGGAGAGGTTAATTGTCAATCGGGGAACAGTACATCAATGAGAAATGAACAACTGTTTGATGAGGGTGGTGCTCAATGGGGGAGCAATACATTTCTGAGGAAAGAACAACATCTTGCCGACAGTAACTTTCCTCTGGAAAACAATACATTTTTGAGGAAAGAACAACAGCTCAATGGGGGTAACTTTCTGTTGGGGAATGGTACATTTATGAGGAAAGAGCAACAGCTGGATGTGGAGAACTTTCACTTGGGGAATAGTACATGTTTGAGTAAAGAGAAACAGCCTGAGAATGGCAACTTCCAAGTGGGAAATAGCACATTTATGAGGAAAGACCAACTTGATGAAGCTAATTTCCAATTTGGGAATAGTACTTTCTTGAGGACAGCACAACAGTTTGATCAGGGTACTTTTCTACTGGGGAAGAATTCATTTATGAGCAAAGAACCACAGCTTGATCGTGGTAATGTTCAAATGGGGAATAGTACATTTATGAGCAAAGAACAACTGCTTAATGAGGGTACTTTCAGACAGGGGAACAGTACCTTTATGAGCAGAGAACAACGACTTGGTGAAGGTTCTTTTCAATTGGGGAACAGTACATGTATGTGGACAGAGCAACAGATTGATGAGATCAATCACCAATGGTGGAATAGTACATTTTCGAGGAAAGACCACCAATATCTGGGGAGGAGTGAACAACAGCAGCCTGTGGATGAGGGAGTAATGCCTGACTGGTACAGTGCAATATGTTCTGCCAATGAAAGAGCTTCTAGTAGTAGTAGTACTCAATGGTACCAAAAGGAGCCTATTGATCAATCTTTGCTGCCCTTGCTCTTGGTGGACAGTCAGCAGCCTAACTTGGCTCTTCAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

1059

Amino Acids

118.83

Weight (kDa)

6.42

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	154 - 208	1e-15	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016297)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41110
malus_domestica	MD03G1047400.v1.1 MD11G1049900.v1.1
pyrus_communis	pycom11g04050
rosa_chinensis	RchiOBHm_Chr5g0073891
rosa_laevigata	RLG00000036422
rosa_multiflora	Rmu_co8433661.1_g000001 Rmu_sc0000470.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007480
rosa_rugosa	Rorug05G0427100
rosa_samantha	Rh5AG484100 Rh5BG504800 Rh5CG528600 Rh5DG517100
rosa_wichuraiana	Rw5G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	1174, 1348, 3096
AccB1I	GGYRCC	3 cut(s)	1174, 1348, 3096
AccB7I	CCANNNNNTGG	1 cut(s)	2986
AccI	GTMKAC	1 cut(s)	1489
AccII	CGCG	1 cut(s)	793
AccIII	TCCGGA	1 cut(s)	848
AciI	CCGC	3 cut(s)	154, 570, 728
AclWI	GGATC	3 cut(s)	117, 665, 1939
AcoI	YGGCCR	3 cut(s)	775, 1872, 1965
AcsI	RAATTY	3 cut(s)	42, 1024, 2728
AcuI	CTGAAG	3 cut(s)	497, 1889, 3155
AfiI	CCNNNNNNNGG	4 cut(s)	364, 465, 2594, 2986
AflIII	ACRYGT	3 cut(s)	1755, 2564, 2903
AhlI	ACTAGT	1 cut(s)	1880
AjnI	CCWGG	6 cut(s)	1177, 1351, 1637, 1714, 1887, 2054
AjuI	GAANNNNNNNTTGG	6 cut(s)	2286, 2318, 2534, 2566, 2853, 2885
Alw21I	GWGCWC	2 cut(s)	1614, 2377
AlwI	GGATC	3 cut(s)	117, 665, 1939
Ama87I	CYCGRG	1 cut(s)	621
Aor13HI	TCCGGA	1 cut(s)	848
AoxI	GGCC	8 cut(s)	151, 181, 712, 775, 1031, 1641, 1872, 1965
ApaI	GGGCCC	1 cut(s)	1645
ApoI	RAATTY	3 cut(s)	42, 1024, 2728
Asp700I	GAANNNNTTC	1 cut(s)	681
Asp718I	GGTACC	3 cut(s)	1174, 1348, 3096
AspLEI	GCGC	2 cut(s)	643, 2010
AspS9I	GGNCC	7 cut(s)	151, 456, 713, 797, 1031, 1641, 1642
AsuC2I	CCSGG	1 cut(s)	717
AsuHPI	GGTGA	9 cut(s)	26, 995, 1349, 1457, 1637, 1877, 2201, 2885, 2933
AsuNHI	GCTAGC	2 cut(s)	637, 1048
AvaI	CYCGRG	1 cut(s)	621
AvaII	GGWCC	2 cut(s)	456, 797
BaeGI	GKGCMC	2 cut(s)	40, 1645
BaeI	ACNNNNGTAYC	2 cut(s)	281, 314
BalI	TGGCCA	1 cut(s)	1874
BanI	GGYRCC	3 cut(s)	1174, 1348, 3096
BanII	GRGCYC	2 cut(s)	1614, 1645
BarI	GAAGNNNNNNTAC	2 cut(s)	1816, 1848
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	1614, 2377
BccI	CCATC	2 cut(s)	1361, 1999
BceAI	ACGGC	1 cut(s)	2209
BciT130I	CCWGG	6 cut(s)	1179, 1353, 1639, 1716, 1889, 2056
BciVI	GTATCC	1 cut(s)	282
BclI	TGATCA	2 cut(s)	2701, 3115
BcnI	CCSGG	1 cut(s)	717
BcuI	ACTAGT	1 cut(s)	1880
BfmI	CTRYAG	1 cut(s)	138
BfuI	GTATCC	1 cut(s)	282
BglII	AGATCT	1 cut(s)	2152
BmcAI	AGTACT	4 cut(s)	1825, 1927, 2674, 3088
Bme1390I	CCNGG	7 cut(s)	717, 1179, 1353, 1639, 1716, 1889, 2056
Bme18I	GGWCC	2 cut(s)	456, 797
BmeT110I	CYCGRG	1 cut(s)	621
BmgT120I	GGNCC	7 cut(s)	151, 456, 713, 797, 1031, 1641, 1642
BmrFI	CCNGG	7 cut(s)	717, 1179, 1353, 1639, 1716, 1889, 2056
BmrI	ACTGGG	3 cut(s)	1537, 1836, 2729
BmsI	GCATC	4 cut(s)	999, 1183, 1438, 2054
BmtI	GCTAGC	2 cut(s)	641, 1052
BmuI	ACTGGG	3 cut(s)	1537, 1836, 2729
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	1131
BpuEI	CTTGAG	5 cut(s)	314, 345, 1086, 1260, 2701
BpuMI	CCSGG	1 cut(s)	717
BsaBI	GATNNNNATC	1 cut(s)	1596
BsaJI	CCNNGG	4 cut(s)	715, 1638, 1715, 2204
BsaWI	WCCGGW	1 cut(s)	848
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	4 cut(s)	364, 465, 2594, 2986
Bse3DI	GCAATG	3 cut(s)	585, 1672, 2028
Bse8I	GATNNNNATC	1 cut(s)	1596
BseAI	TCCGGA	1 cut(s)	848
BseBI	CCWGG	6 cut(s)	1179, 1353, 1639, 1716, 1889, 2056
BseDI	CCNNGG	4 cut(s)	715, 1638, 1715, 2204
BseGI	GGATG	7 cut(s)	247, 922, 1111, 1538, 1934, 2539, 3022
BseJI	GATNNNNATC	1 cut(s)	1596
BseLI	CCNNNNNNNGG	4 cut(s)	364, 465, 2594, 2986
BseMI	GCAATG	3 cut(s)	585, 1672, 2028
BseMII	CTCAG	2 cut(s)	2390, 2580
BseRI	GAGGAG	3 cut(s)	71, 287, 3007
BseSI	GKGCMC	2 cut(s)	40, 1645
BsgI	GTGCAG	4 cut(s)	1302, 1440, 2088, 2163
Bsh1236I	CGCG	1 cut(s)	793
Bsh1285I	CGRYCG	1 cut(s)	782
BshFI	GGCC	8 cut(s)	153, 183, 714, 777, 1033, 1643, 1874, 1967
BshNI	GGYRCC	3 cut(s)	1174, 1348, 3096
BsiEI	CGRYCG	1 cut(s)	782
BsiHKAI	GWGCWC	2 cut(s)	1614, 2377
BsiHKCI	CYCGRG	1 cut(s)	621
BsiSI	CCGG	3 cut(s)	717, 849, 1968
BslFI	GGGAC	5 cut(s)	338, 1633, 1732, 1843, 2222
BslI	CCNNNNNNNGG	4 cut(s)	364, 465, 2594, 2986
BsmFI	GGGAC	5 cut(s)	338, 1633, 1732, 1843, 2222
BsnI	GGCC	8 cut(s)	153, 183, 714, 777, 1033, 1643, 1874, 1967
BsoBI	CYCGRG	1 cut(s)	621
Bsp120I	GGGCCC	1 cut(s)	1641
Bsp1286I	GDGCHC	4 cut(s)	40, 1614, 1645, 2377
Bsp13I	TCCGGA	1 cut(s)	848
Bsp19I	CCATGG	1 cut(s)	2204
BspACI	CCGC	3 cut(s)	154, 570, 728
BspANI	GGCC	8 cut(s)	153, 183, 714, 777, 1033, 1643, 1874, 1967
BspCNI	CTCAG	2 cut(s)	2391, 2581
BspEI	TCCGGA	1 cut(s)	848
BspFNI	CGCG	1 cut(s)	793
BspOI	GCTAGC	2 cut(s)	641, 1052
BspPI	GGATC	3 cut(s)	117, 665, 1939
BspQI	GCTCTTC	2 cut(s)	2017, 3174
BspT107I	GGYRCC	3 cut(s)	1174, 1348, 3096
BsrDI	GCAATG	3 cut(s)	585, 1672, 2028
BssECI	CCNNGG	4 cut(s)	715, 1638, 1715, 2204
BssNAI	GTATAC	1 cut(s)	1490
BssT1I	CCWWGG	1 cut(s)	2204
Bst1107I	GTATAC	1 cut(s)	1490
Bst2UI	CCWGG	6 cut(s)	1179, 1353, 1639, 1716, 1889, 2056
Bst6I	CTCTTC	4 cut(s)	121, 850, 2017, 3174
BstAPI	GCANNNNNTGC	1 cut(s)	556
BstDEI	CTNAG	3 cut(s)	662, 2399, 2589
BstDSI	CCRYGG	1 cut(s)	2204
BstEII	GGTNACC	1 cut(s)	1355
BstENI	CCTNNNNNAGG	1 cut(s)	463
BstF5I	GGATG	7 cut(s)	247, 922, 1111, 1538, 1934, 2539, 3022
BstFNI	CGCG	1 cut(s)	793
BstHHI	GCGC	2 cut(s)	643, 2010
BstMCI	CGRYCG	1 cut(s)	782
BstMWI	GCNNNNNNNGC	9 cut(s)	150, 556, 643, 1163, 1337, 1798, 1906, 2102, 3133
BstNI	CCWGG	6 cut(s)	1179, 1353, 1639, 1716, 1889, 2056
BstNSI	RCATGY	6 cut(s)	81, 333, 1759, 2185, 2568, 2907
BstPI	GGTNACC	1 cut(s)	1355
BstSCI	CCNGG	7 cut(s)	715, 1177, 1351, 1637, 1714, 1887, 2054
BstSFI	CTRYAG	1 cut(s)	138
BstSLI	GKGCMC	2 cut(s)	40, 1645
BstUI	CGCG	1 cut(s)	793
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	2152
BstYI	RGATCY	1 cut(s)	2152
BstZ17I	GTATAC	1 cut(s)	1490
BsuI	GTATCC	1 cut(s)	282
BsuRI	GGCC	8 cut(s)	153, 183, 714, 777, 1033, 1643, 1874, 1967
BtgI	CCRYGG	1 cut(s)	2204
BtsCI	GGATG	7 cut(s)	247, 922, 1111, 1538, 1934, 2539, 3022
BtsI	GCAGTG	2 cut(s)	1735, 2146
BtsIMutI	CAGTG	7 cut(s)	425, 1423, 1510, 1735, 1846, 2146, 3049
CfoI	GCGC	2 cut(s)	643, 2010
Cfr13I	GGNCC	7 cut(s)	151, 456, 713, 797, 1031, 1641, 1642
CsiI	ACCWGGT	2 cut(s)	1177, 1351
DdeI	CTNAG	3 cut(s)	662, 2399, 2589
EaeI	YGGCCR	3 cut(s)	775, 1872, 1965
Eam1104I	CTCTTC	4 cut(s)	121, 850, 2017, 3174
EarI	CTCTTC	4 cut(s)	121, 850, 2017, 3174
EciI	GGCGGA	1 cut(s)	559
Ecl136II	GAGCTC	1 cut(s)	1612
Eco130I	CCWWGG	1 cut(s)	2204
Eco24I	GRGCYC	2 cut(s)	1614, 1645
Eco47I	GGWCC	2 cut(s)	456, 797
Eco53kI	GAGCTC	1 cut(s)	1612
Eco57I	CTGAAG	3 cut(s)	497, 1889, 3155
Eco88I	CYCGRG	1 cut(s)	621
Eco91I	GGTNACC	1 cut(s)	1355
EcoICRI	GAGCTC	1 cut(s)	1612
EcoNI	CCTNNNNNAGG	1 cut(s)	463
EcoO109I	RGGNCCY	2 cut(s)	713, 1641
EcoO65I	GGTNACC	1 cut(s)	1355
EcoRI	GAATTC	1 cut(s)	2728
EcoRII	CCWGG	6 cut(s)	1177, 1351, 1637, 1714, 1887, 2054
EcoT14I	CCWWGG	1 cut(s)	2204
EcoT22I	ATGCAT	1 cut(s)	2281
EcoT38I	GRGCYC	2 cut(s)	1614, 1645
ErhI	CCWWGG	1 cut(s)	2204
FalI	AAGNNNNNCTT	4 cut(s)	118, 150, 2625, 2657
FaqI	GGGAC	5 cut(s)	338, 1633, 1732, 1843, 2222
FauNDI	CATATG	1 cut(s)	802
FbaI	TGATCA	2 cut(s)	2701, 3115
FblI	GTMKAC	1 cut(s)	1489
FokI	GGATG	7 cut(s)	254, 929, 1098, 1525, 1921, 2546, 3029
FriOI	GRGCYC	2 cut(s)	1614, 1645
GlaI	GCGC	2 cut(s)	642, 2009
GsuI	CTGGAG	1 cut(s)	1131
HaeIII	GGCC	8 cut(s)	153, 183, 714, 777, 1033, 1643, 1874, 1967
HapII	CCGG	3 cut(s)	717, 849, 1968
HhaI	GCGC	2 cut(s)	643, 2010
Hin6I	GCGC	2 cut(s)	641, 2008
HinP1I	GCGC	2 cut(s)	641, 2008
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	2 cut(s)	1071, 1245
HinfI	GANTC	6 cut(s)	115, 884, 950, 986, 1421, 1679
HpaII	CCGG	3 cut(s)	717, 849, 1968
HphI	GGTGA	9 cut(s)	26, 995, 1349, 1457, 1637, 1877, 2201, 2885, 2933
HpyAV	CCTTC	7 cut(s)	141, 442, 512, 804, 1196, 1370, 2870
HpyCH4IV	ACGT	1 cut(s)	2253
HpyF10VI	GCNNNNNNNGC	9 cut(s)	150, 556, 643, 1163, 1337, 1798, 1906, 2102, 3133
HpyF3I	CTNAG	3 cut(s)	662, 2399, 2589
HpySE526I	ACGT	1 cut(s)	2253
HspAI	GCGC	2 cut(s)	641, 2008
Kpn2I	TCCGGA	1 cut(s)	848
KpnI	GGTACC	3 cut(s)	1178, 1352, 3100
Ksp22I	TGATCA	2 cut(s)	2701, 3115
LguI	GCTCTTC	2 cut(s)	2017, 3174
LmnI	GCTCC	8 cut(s)	274, 1144, 1150, 1318, 1609, 2130, 2385, 3106
LweI	GCATC	4 cut(s)	999, 1183, 1438, 2054
MabI	ACCWGGT	2 cut(s)	1177, 1351
MaeII	ACGT	1 cut(s)	2253
MfeI	CAATTG	1 cut(s)	2888
MflI	RGATCY	1 cut(s)	2152
MhlI	GDGCHC	4 cut(s)	40, 1614, 1645, 2377
MlsI	TGGCCA	1 cut(s)	1874
MluNI	TGGCCA	1 cut(s)	1874
MlyI	GAGTC	2 cut(s)	109, 1688
MmeI	TCCRAC	2 cut(s)	1656, 1962
Mox20I	TGGCCA	1 cut(s)	1874
Mph1103I	ATGCAT	1 cut(s)	2281
MroI	TCCGGA	1 cut(s)	848
MroXI	GAANNNNTTC	1 cut(s)	681
MscI	TGGCCA	1 cut(s)	1874
MseI	TTAA	5 cut(s)	474, 878, 2256, 2313, 2814
MslI	CAYNNNNRTG	6 cut(s)	1446, 1497, 1689, 2247, 2624, 2908
Msp20I	TGGCCA	1 cut(s)	1874
MspA1I	CMGCKG	2 cut(s)	2530, 3175
MspI	CCGG	3 cut(s)	717, 849, 1968
MspR9I	CCNGG	7 cut(s)	717, 1179, 1353, 1639, 1716, 1889, 2056
MunI	CAATTG	1 cut(s)	2888
MvaI	CCWGG	6 cut(s)	1179, 1353, 1639, 1716, 1889, 2056
MvnI	CGCG	1 cut(s)	793
MwoI	GCNNNNNNNGC	9 cut(s)	150, 556, 643, 1163, 1337, 1798, 1906, 2102, 3133
NciI	CCSGG	1 cut(s)	717
NcoI	CCATGG	1 cut(s)	2204
NdeI	CATATG	1 cut(s)	802
NheI	GCTAGC	2 cut(s)	637, 1048
NmuCI	GTSAC	7 cut(s)	92, 1205, 1355, 1568, 1680, 1883, 2189
NsiI	ATGCAT	1 cut(s)	2281
NspI	RCATGY	6 cut(s)	81, 333, 1759, 2185, 2568, 2907
PaeI	GCATGC	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	621
PciI	ACATGT	3 cut(s)	1755, 2564, 2903
PciSI	GCTCTTC	2 cut(s)	2017, 3174
PdmI	GAANNNNTTC	1 cut(s)	681
PfeI	GAWTC	4 cut(s)	884, 950, 986, 1421
PflMI	CCANNNNNTGG	1 cut(s)	2986
PfoI	TCCNGGA	1 cut(s)	2054
PleI	GAGTC	2 cut(s)	109, 1687
PpsI	GAGTC	2 cut(s)	109, 1687
PscI	ACATGT	3 cut(s)	1755, 2564, 2903
Psp124BI	GAGCTC	1 cut(s)	1614
Psp6I	CCWGG	6 cut(s)	1177, 1351, 1637, 1714, 1887, 2054
PspEI	GGTNACC	1 cut(s)	1355
PspGI	CCWGG	6 cut(s)	1177, 1351, 1637, 1714, 1887, 2054
PspOMI	GGGCCC	1 cut(s)	1641
PspPI	GGNCC	7 cut(s)	151, 456, 713, 797, 1031, 1641, 1642
PspXI	VCTCGAGB	1 cut(s)	621
PsuI	RGATCY	1 cut(s)	2152
PvuII	CAGCTG	2 cut(s)	2530, 3175
RseI	CAYNNNNRTG	6 cut(s)	1446, 1497, 1689, 2247, 2624, 2908
SacI	GAGCTC	1 cut(s)	1614
SapI	GCTCTTC	2 cut(s)	2017, 3174
SaqAI	TTAA	5 cut(s)	474, 878, 2256, 2313, 2814
Sau96I	GGNCC	7 cut(s)	151, 456, 713, 797, 1031, 1641, 1642
ScaI	AGTACT	4 cut(s)	1825, 1927, 2674, 3088
SchI	GAGTC	2 cut(s)	109, 1688
ScrFI	CCNGG	7 cut(s)	717, 1179, 1353, 1639, 1716, 1889, 2056
SduI	GDGCHC	4 cut(s)	40, 1614, 1645, 2377
SexAI	ACCWGGT	2 cut(s)	1177, 1351
SfaNI	GCATC	4 cut(s)	999, 1183, 1438, 2054
SfcI	CTRYAG	1 cut(s)	138
Sfr274I	CTCGAG	1 cut(s)	621
SinI	GGWCC	2 cut(s)	456, 797
SlaI	CTCGAG	1 cut(s)	621
SmiMI	CAYNNNNRTG	6 cut(s)	1446, 1497, 1689, 2247, 2624, 2908
SmlI	CTYRAG	6 cut(s)	293, 360, 621, 1101, 1275, 2680
SmoI	CTYRAG	6 cut(s)	293, 360, 621, 1101, 1275, 2680
SpeI	ACTAGT	1 cut(s)	1880
SphI	GCATGC	1 cut(s)	81
SsiI	CCGC	3 cut(s)	154, 570, 728
SstI	GAGCTC	1 cut(s)	1614
StyD4I	CCNGG	7 cut(s)	715, 1177, 1351, 1637, 1714, 1887, 2054
StyI	CCWWGG	1 cut(s)	2204
TaiI	ACGT	1 cut(s)	2256
TaqI	TCGA	7 cut(s)	230, 596, 622, 872, 1191, 1365, 2966
TaqII	GACCGA	1 cut(s)	796
TauI	GCSGC	2 cut(s)	156, 730
TfiI	GAWTC	4 cut(s)	884, 950, 986, 1421
Tru1I	TTAA	5 cut(s)	474, 878, 2256, 2313, 2814
Tru9I	TTAA	5 cut(s)	474, 878, 2256, 2313, 2814
TscAI	CASTG	7 cut(s)	432, 1423, 1510, 1735, 1846, 2146, 3049
TseFI	GTSAC	7 cut(s)	92, 1205, 1355, 1568, 1680, 1883, 2189
Tsp45I	GTSAC	7 cut(s)	92, 1205, 1355, 1568, 1680, 1883, 2189
TspGWI	ACGGA	1 cut(s)	1679
TspRI	CASTG	7 cut(s)	432, 1423, 1510, 1735, 1846, 2146, 3049
Van91I	CCANNNNNTGG	1 cut(s)	2986
VpaK11BI	GGWCC	2 cut(s)	456, 797
XagI	CCTNNNNNAGG	1 cut(s)	463
XapI	RAATTY	3 cut(s)	42, 1024, 2728
XbaI	TCTAGA	1 cut(s)	2176
XceI	RCATGY	6 cut(s)	81, 333, 1759, 2185, 2568, 2907
XhoI	CTCGAG	1 cut(s)	621
XmiI	GTMKAC	1 cut(s)	1489
XmnI	GAANNNNTTC	1 cut(s)	681
ZrmI	AGTACT	4 cut(s)	1825, 1927, 2674, 3088
Zsp2I	ATGCAT	1 cut(s)	2281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.