Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0016297

Physical Location & Seq

Genomic Coordinates Forward (+)

59369397 .. 59373194

Gene Structure 3798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0427100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAGTCGAACCAAGCCAATCCCAGCATACTGTGCAGCCCAGAAGGCTCTCAGAGAACCCTGTACCCATATGTCACTGGTACATCTGTAGTTGCTCTCAAGTACAAAGATGGGATTTTGATGGCTGCTGATATGGGAGGTTCATATGGATCTACCCTGCGGTACAAGAGTGTGGAACGAATGAAGCCTATTGGAAAGCATTCTCTTCTTGGTGCAAGTGGAGAAATAAGTGATTTCCAGGAGTTGTTAAAATATCTTGATGAGCTTGTCCTATATGACAACATGTGGGATGATGGGAACTCTTTGGGACCTAAAGAGATCCACAACTATTTGACCCGTGTGATGTACAATCGCCGTAACAAGTTCAACCCACTGTGGAATTCACTTGTCCTTGGTGGAGTGAAAAACGGAGAGAAATACCTTGGAATGGTTAGTATGATAGGTGTAAATTTCGAGGACAACCATGTTGCTACCGGATTTGGGAATCACCTTGCAAGGCCTATTCTTCGTGATGAGTGGCGTGAGGACTTGAGTTTTGAAGAAGGCGTGAAGCTGCTGGAGAAGTGCATGCGTGTCCTTCTGTACCGTGATAGGTCTGCTGTCAACAAGCTTCAGATAGCTAAGATCACTGGAGAAGGTGTAACAATCTCTCAACCCTACTCTTTGAAGACTTTCTGGGGATTCTCTGCTTTCCAAAATCCAACTGCCGGTGCTGAAGGATCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

242

Amino Acids

27.15

Weight (kDa)

6.91

Isoelectric Point (pI)

29.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	26 - 209	6.5e-33	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016297)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41110
malus_domestica	MD03G1047400.v1.1 MD11G1049900.v1.1
pyrus_communis	pycom11g04050
rosa_chinensis	RchiOBHm_Chr5g0073891
rosa_laevigata	RLG00000036422
rosa_multiflora	Rmu_co8433661.1_g000001 Rmu_sc0000470.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007480
rosa_rugosa	Rorug05G0427100
rosa_samantha	Rh5AG484100 Rh5BG504800 Rh5CG528600 Rh5DG517100
rosa_wichuraiana	Rw5G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	160
AclWI	GGATC	3 cut(s)	157, 313, 727
AcsI	RAATTY	2 cut(s)	379, 448
AcuI	CTGAAG	1 cut(s)	596
AfaI	GTAC	6 cut(s)	65, 82, 104, 164, 347, 584
AfiI	CCNNNNNNNGG	3 cut(s)	427, 480, 707
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	367, 539, 667
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	4 cut(s)	265, 553, 610, 620
AluI	AGCT	4 cut(s)	265, 553, 610, 620
AlwI	GGATC	3 cut(s)	157, 313, 727
AoxI	GGCC	1 cut(s)	497
ApeKI	GCWGC	3 cut(s)	36, 125, 553
ApoI	RAATTY	2 cut(s)	379, 448
ArsI	GACNNNNNNTTYG	2 cut(s)	518, 550
Asp700I	GAANNNNTTC	2 cut(s)	199, 671
AspS9I	GGNCC	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	308
BaeI	ACNNNNGTAYC	4 cut(s)	72, 105, 154, 187
BbsI	GAAGAC	1 cut(s)	674
BbvI	GCAGC	3 cut(s)	48, 112, 540
BccI	CCATC	3 cut(s)	104, 115, 287
BceAI	ACGGC	1 cut(s)	339
BciT130I	CCWGG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	87
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	3 cut(s)	37, 126, 554
BlsI	GCNGC	3 cut(s)	38, 127, 555
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	674
BpmI	CTGGAG	2 cut(s)	578, 651
BpuEI	CTTGAG	2 cut(s)	83, 550
BsaJI	CCNNGG	2 cut(s)	391, 421
BsaWI	WCCGGW	1 cut(s)	473
BsaXI	ACNNNNNCTCC	2 cut(s)	624, 654
Bsc4I	CCNNNNNNNGG	3 cut(s)	427, 480, 707
Bse118I	RCCGGY	1 cut(s)	707
Bse1I	ACTGG	2 cut(s)	82, 634
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	2 cut(s)	391, 421
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	3 cut(s)	427, 480, 707
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	2 cut(s)	82, 634
BseXI	GCAGC	3 cut(s)	48, 112, 540
BseYI	CCCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	499
BsiSI	CCGG	2 cut(s)	474, 708
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	3 cut(s)	427, 480, 707
BsmFI	GGGAC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	499
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	4 cut(s)	149, 318, 624, 719
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	499
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	3 cut(s)	157, 313, 727
BsrFI	RCCGGY	1 cut(s)	707
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	82, 634
BssAI	RCCGGY	1 cut(s)	707
BssECI	CCNNGG	2 cut(s)	391, 421
BssMI	GATC	4 cut(s)	149, 318, 624, 719
BssT1I	CCWWGG	2 cut(s)	391, 421
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	3 cut(s)	33, 375, 587
Bst6I	CTCTTC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstAUI	TGTACA	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	569
BstDEI	CTNAG	2 cut(s)	51, 621
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	4 cut(s)	152, 321, 627, 722
BstMBI	GATC	4 cut(s)	149, 318, 624, 719
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 45
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	2 cut(s)	286, 571
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	3 cut(s)	48, 112, 540
BstV2I	GAAGAC	1 cut(s)	674
BstX2I	RGATCY	2 cut(s)	149, 318
BstYI	RGATCY	2 cut(s)	149, 318
BsuRI	GGCC	1 cut(s)	499
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	3 cut(s)	75, 371, 627
Cac8I	GCNNGC	1 cut(s)	569
Cfr10I	RCCGGY	1 cut(s)	707
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	6 cut(s)	64, 81, 103, 163, 346, 583
CviAII	CATG	4 cut(s)	283, 464, 568, 723
CviQI	GTAC	6 cut(s)	64, 81, 103, 163, 346, 583
DdeI	CTNAG	2 cut(s)	51, 621
DpnI	GATC	4 cut(s)	151, 320, 626, 721
DpnII	GATC	4 cut(s)	149, 318, 624, 719
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco130I	CCWWGG	2 cut(s)	391, 421
Eco147I	AGGCCT	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	2 cut(s)	391, 421
ErhI	CCWWGG	2 cut(s)	391, 421
FaeI	CATG	4 cut(s)	286, 467, 571, 726
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	4 cut(s)	282, 463, 567, 722
FauNDI	CATATG	2 cut(s)	70, 145
Fnu4HI	GCNGC	3 cut(s)	37, 126, 554
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	37, 126, 554
GluI	GCNGC	3 cut(s)	37, 126, 554
GsaI	CCCAGC	1 cut(s)	27
GsuI	CTGGAG	2 cut(s)	578, 651
HaeIII	GGCC	1 cut(s)	499
HapII	CCGG	2 cut(s)	474, 708
Hin1II	CATG	4 cut(s)	286, 467, 571, 726
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	3 cut(s)	5, 484, 681
HpaII	CCGG	2 cut(s)	474, 708
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	2 cut(s)	54, 615
Hpy188III	TCNNGA	2 cut(s)	257, 509
Hpy8I	GTNNAC	1 cut(s)	604
HpyAV	CCTTC	5 cut(s)	38, 536, 587, 629, 710
HpyCH4III	ACNGT	3 cut(s)	33, 375, 587
HpyCH4V	TGCA	4 cut(s)	36, 215, 494, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 45
HpyF3I	CTNAG	2 cut(s)	51, 621
Hsp92II	CATG	4 cut(s)	286, 467, 571, 726
Kzo9I	GATC	4 cut(s)	149, 318, 624, 719
Lsp1109I	GCAGC	3 cut(s)	48, 112, 540
MaeIII	GTNAC	3 cut(s)	73, 356, 640
MalI	GATC	4 cut(s)	151, 320, 626, 721
MboI	GATC	4 cut(s)	149, 318, 624, 719
MboII	GAAGA	4 cut(s)	197, 497, 551, 679
MflI	RGATCY	2 cut(s)	149, 318
MluCI	AATT	2 cut(s)	379, 448
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	725
MnlI	CCTC	3 cut(s)	131, 448, 517
MroXI	GAANNNNTTC	2 cut(s)	199, 671
MseI	TTAA	1 cut(s)	248
MspI	CCGG	2 cut(s)	474, 708
MspR9I	CCNGG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	2 cut(s)	33, 45
NdeI	CATATG	2 cut(s)	70, 145
NdeII	GATC	4 cut(s)	149, 318, 624, 719
NlaIII	CATG	4 cut(s)	286, 467, 571, 726
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	2 cut(s)	286, 571
PaeI	GCATGC	1 cut(s)	571
PceI	AGGCCT	1 cut(s)	499
PciI	ACATGT	1 cut(s)	282
PctI	GAATGC	1 cut(s)	199
PdmI	GAANNNNTTC	2 cut(s)	199, 671
PfeI	GAWTC	2 cut(s)	484, 681
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	3 cut(s)	38, 127, 555
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	308
PscI	ACATGT	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	237
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	308
PspPPI	RGGWCCY	1 cut(s)	308
PsuI	RGATCY	2 cut(s)	149, 318
RsaI	GTAC	6 cut(s)	65, 82, 104, 164, 347, 584
RsaNI	GTAC	6 cut(s)	64, 81, 103, 163, 346, 583
SaqAI	TTAA	1 cut(s)	248
SatI	GCNGC	3 cut(s)	37, 126, 554
Sau3AI	GATC	4 cut(s)	149, 318, 624, 719
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	239
SfcI	CTRYAG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	308
SmlI	CTYRAG	2 cut(s)	98, 529
SmoI	CTYRAG	2 cut(s)	98, 529
SphI	GCATGC	1 cut(s)	571
Sse9I	AATT	2 cut(s)	379, 448
SseBI	AGGCCT	1 cut(s)	499
SsiI	CCGC	1 cut(s)	160
StuI	AGGCCT	1 cut(s)	499
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	2 cut(s)	391, 421
TaaI	ACNGT	3 cut(s)	33, 375, 587
TaqI	TCGA	2 cut(s)	8, 453
TasI	AATT	2 cut(s)	379, 448
TatI	WGTACW	2 cut(s)	102, 345
TfiI	GAWTC	2 cut(s)	484, 681
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TscAI	CASTG	3 cut(s)	82, 378, 634
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	3 cut(s)	36, 125, 553
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	132, 197
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	3 cut(s)	82, 378, 634
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	2 cut(s)	379, 448
XceI	RCATGY	2 cut(s)	286, 571
XmnI	GAANNNNTTC	2 cut(s)	199, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.