Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016297

Physical Location & Seq

Genomic Coordinates Reverse (-)

80224859 .. 80229134

Gene Structure 4276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG504800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3135 bp

ATGCCTTGCAGCCAAAATATATATAATACAGGGGTGAAAATGGAAAGTGGAGGTGAGGTAAAACGAAGAAAGAGTGCCCGAATTTCAGCATTAGAGGAGGAAAAGAGGAAAAAAGCATGCACCGTAGAAAGTGACAATGTTAGCGAGGATCAGACTCATGTTAGAAGAGGAACTTCTACAGGCAGAAGGGGCCGCAAGCGAAAAAGACTTGAAGATGTTGGCCTATCATCTCCACAGGATAGTGAAGACCCAAAAGATGAAGATTATTCGATCTACGAGGATGAAGCAGCATATCTGTCATATATACAGGAGGAGCCTGAAACTCGGATACTTGAGTTTATCCTTGATATACTGCAAAGGAGGGACACATGCAACTTATTCACAAAGCCTGTTGACCCTCAAGAGGTTTGGACCTATTACAGGATTATTAAAGAGCCAATGGATTTTGGAACCATAAGGACAAAACTTCAGGAAGGAAAATATAAAAACTTACAACAGTTTGAGCATGATGTGCTTCTAATATCCGCCAATGCAATGCACTTCAATTCATCGACCACCGTTTTTTACCAAGAGGCTCGAGCTATACAAGAGCTAGCGCAGCAGCTTTTCCAATCTCTAAGAGCTGATCCAGAACAGTTTCAGTTACAATTCTTACTGACAAAAAGAGGCCCCGGTAGGAAGCCGCAAAATCAAGGCAGAGGTTCACATAGAAGCGTTCCTAGACCAGTTGGCCGACCGAGTTCCTCGCGTGGTCCATATGTTAGAAGGAAAAGTCAAGCAGGCTCATCTAATGCAAACTCTTCCGGAATGAGAAATGGTAGAAACTCGAACTTAATGGAATCAGAGAGGCGTGAAACTTATAGGCTTTCGGATGAGGATAAATCACTATTATCAGTTGTCCATGATTCTGCAAAGATACTTCTTCATGTTGATAATGGTGATTCTGGATATAAAGAAAGTTTGATGCAGTTTGCTAAAAATTTGGGGCCAACAGCTCAAATGCTAGCCGAAAGTAAGTTGGTACAAGCTTTCAGCCAACCTCCGAATTGCCAGCCTCAAGCCACTCATCCAATACAAACCCAGAACTACATGGCTCCTGCTCCAGTCCTAGCTTTGCCAGCACCAGAGGTACCTGGTCGCCTTCTCGATGCTAACAATGGTCACATACATCGTAGTTCAAGTGAAAGTAAGTTGGCACAAGCTTTCAGCCAACCTCCGAATTGCCAGCCTCAAGCCAACTATCCAATACAGAGCCAAAACTACATGGCTCCTGCACCAGTCCTAGCTTTGCCAGCACCAGAGGTACCTGGTCACCTTCTCGATGGTAACAATGGTCAATTACATCGTGGTTCCCCATATTACTTGCCCAACAGTGATTCAAGTGCTTCATATTTTCACGGTGATGCTTCTGCACAAGGATATGCAAGAGCCAGCAACGGTGGTATACATATCAATGACAGTGCTAACAGGAGAAACATGAACCCTCCTAGCACATCCCAGTTAGGCATGGTTCAGAACTATCGTGACAAGGGAAAAATGGTTGTTGATCTAAATCAAAACATGGAGCTCGTAGGGACTGGTGATACAGAAGCCAGGGCCCATTCTCAAAATGTAAACAGCAATGTTCGGTTGGAGTCACATATCCGTGTTGTTAGAGATTTCAGTAGTCCTGGGACTTCAAGCAGTGGCATGAAGTTCAGGGCTGTGGACATGTTGGGCAAGCCTAACCCCCTAGAAAACCAGCAGCAGTTTCAGCAAGCTCATCAGTTGCCTAGTAGTACTGGGACTTCAAACAGTGGCATACTCTCTTGGGCTGTGAATAGGTTGGCCAATACTAGTCACCAGGAAAACCAGCAGCTTCAGCCAGCACAGTTGTCTAGTACTGGATCATCCAACCAGTCAAGTTTACTAGAGATCATGGCCGGAAGAAGTACCTATTTGAAGCCATCATCATCTTCGTTGCGCTCTTCATCTGCAATGTTATCAAGTTTGAGTGAGGCATCAACCTCCTGGAATGATTTTGGCTCACACCTGAACAACAACAATGCAGCTAAATCTGCACAGACAGGTCAGCAGCTTCAATGGAGCCAACGCAGTGCAGAACAAGATCTGCAAGAAAATTGTAGCTTTCTAGACATGCTTGGTGACGGCTGTAACCCATGGGACAAGAGTAGTACACTTCTGAAAAACGAACAACATCTTGATGACGTTAATTATTCTTTGGGGAGTAATGCATTTATGAGAAATGAACAACAGCTTGGAGAGGTTAATTGTCAATCGGGGAACAGTACATCAATGAGAAATGAACAACTGTTTGATGAGGGTGGTGCTCAATGGGGGAGCAATACATTTCTGAGGAAAGAACAACATCTTGCCGACAGTAACTTTCCTCTGGAAAACAATACATTTTTGAGGAAAGAACAACAGCTCAATGGGGGTAACTTTCTGTTGGGGAATGGTACATTTATGAGGAAAGAGCAACAGCTGGATGTGGAGAACTTTCACTTGGGGAATAGTACATGTTTGAGTAAAGAGAAACAGCCTGAGAATGGCAACTTCCAAGTGGGAAATAGCACATTTATGAGGAAAGACCAACTTGATGAAGCTAATTTCCAATTTGGGAATAGTACTTTCTTGAGGACAGCACAACAGTTTGATCAGGGTACTTTTCTACTGGGGAAGAATTCATTTATGAGCAAAGAACCACAGCTTGATCGTGGTAATGTTCAAATGGGGAATAGTACATTTATGAGCAAAGAACAACTGCTTAATGAGGGTACTTTCAGACAGGGGAACAGTACCTTTATGAGCAGAGAACAACGACTTGGTGAAGGTTCTTTTCAATTGGGGAACAGTACATGTATGTGGACAGAGCAACAGATTGATGAGATCAATCACCAATGGTGGAATAGTACATTTTCGAGGAAAGACCACCAATATCTGGGGAGGAGTGAACAACAGCAGCCTGTGGATGAGGGAGTAATGCCTGACTGGTACAGTGCAATATGTTCTGCCAATGAAAGAGCTTCTAGTAGTAGTAGTACTCAATGGTACCAAAAGGAGCCTATTGATCAATCTTTGCTGCCCTTGCTCTTGGTGGACAGTCAGCAGCCTAACTTGGCTCTTCAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

1044

Amino Acids

116.79

Weight (kDa)

6.2

Isoelectric Point (pI)

55.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	112 - 193	1.1e-20	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016297)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41110
malus_domestica	MD03G1047400.v1.1 MD11G1049900.v1.1
pyrus_communis	pycom11g04050
rosa_chinensis	RchiOBHm_Chr5g0073891
rosa_laevigata	RLG00000036422
rosa_multiflora	Rmu_co8433661.1_g000001 Rmu_sc0000470.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007480
rosa_rugosa	Rorug05G0427100
rosa_samantha	Rh5AG484100 Rh5BG504800 Rh5CG528600 Rh5DG517100
rosa_wichuraiana	Rw5G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	1129, 1303, 3051
AccB1I	GGYRCC	3 cut(s)	1129, 1303, 3051
AccB7I	CCANNNNNTGG	1 cut(s)	2941
AccI	GTMKAC	1 cut(s)	1444
AccII	CGCG	1 cut(s)	748
AccIII	TCCGGA	1 cut(s)	803
AciI	CCGC	3 cut(s)	193, 525, 683
AclWI	GGATC	3 cut(s)	156, 620, 1894
AcoI	YGGCCR	3 cut(s)	730, 1827, 1920
AcsI	RAATTY	3 cut(s)	81, 979, 2683
AcuI	CTGAAG	3 cut(s)	452, 1844, 3110
AfiI	CCNNNNNNNGG	4 cut(s)	403, 420, 2549, 2941
AflIII	ACRYGT	3 cut(s)	1710, 2519, 2858
AhlI	ACTAGT	1 cut(s)	1835
AjnI	CCWGG	6 cut(s)	1132, 1306, 1592, 1669, 1842, 2009
AjuI	GAANNNNNNNTTGG	6 cut(s)	2241, 2273, 2489, 2521, 2808, 2840
Alw21I	GWGCWC	2 cut(s)	1569, 2332
AlwI	GGATC	3 cut(s)	156, 620, 1894
Ama87I	CYCGRG	1 cut(s)	576
Aor13HI	TCCGGA	1 cut(s)	803
AoxI	GGCC	8 cut(s)	190, 220, 667, 730, 986, 1596, 1827, 1920
ApaI	GGGCCC	1 cut(s)	1600
ApoI	RAATTY	3 cut(s)	81, 979, 2683
Asp700I	GAANNNNTTC	1 cut(s)	636
Asp718I	GGTACC	3 cut(s)	1129, 1303, 3051
AspLEI	GCGC	2 cut(s)	598, 1965
AspS9I	GGNCC	7 cut(s)	190, 411, 668, 752, 986, 1596, 1597
AsuC2I	CCSGG	1 cut(s)	672
AsuNHI	GCTAGC	2 cut(s)	592, 1003
AvaI	CYCGRG	1 cut(s)	576
AvaII	GGWCC	2 cut(s)	411, 752
BaeGI	GKGCMC	2 cut(s)	79, 1600
BaeI	ACNNNNGTAYC	2 cut(s)	320, 353
BalI	TGGCCA	1 cut(s)	1829
BanI	GGYRCC	3 cut(s)	1129, 1303, 3051
BanII	GRGCYC	2 cut(s)	1569, 1600
BarI	GAAGNNNNNNTAC	2 cut(s)	1771, 1803
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	1569, 2332
BccI	CCATC	2 cut(s)	1316, 1954
BceAI	ACGGC	1 cut(s)	2164
BciT130I	CCWGG	6 cut(s)	1134, 1308, 1594, 1671, 1844, 2011
BciVI	GTATCC	1 cut(s)	321
BclI	TGATCA	2 cut(s)	2656, 3070
BcnI	CCSGG	1 cut(s)	672
BcuI	ACTAGT	1 cut(s)	1835
BfmI	CTRYAG	1 cut(s)	177
BfuI	GTATCC	1 cut(s)	321
BglII	AGATCT	1 cut(s)	2107
BmcAI	AGTACT	4 cut(s)	1780, 1882, 2629, 3043
Bme1390I	CCNGG	7 cut(s)	672, 1134, 1308, 1594, 1671, 1844, 2011
Bme18I	GGWCC	2 cut(s)	411, 752
BmeT110I	CYCGRG	1 cut(s)	576
BmgT120I	GGNCC	7 cut(s)	190, 411, 668, 752, 986, 1596, 1597
BmrFI	CCNGG	7 cut(s)	672, 1134, 1308, 1594, 1671, 1844, 2011
BmrI	ACTGGG	3 cut(s)	1492, 1791, 2684
BmsI	GCATC	4 cut(s)	954, 1138, 1393, 2009
BmtI	GCTAGC	2 cut(s)	596, 1007
BmuI	ACTGGG	3 cut(s)	1492, 1791, 2684
BpiI	GAAGAC	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	1086
BpuEI	CTTGAG	5 cut(s)	353, 384, 1041, 1215, 2656
BpuMI	CCSGG	1 cut(s)	672
BsaBI	GATNNNNATC	1 cut(s)	1551
BsaJI	CCNNGG	4 cut(s)	670, 1593, 1670, 2159
BsaWI	WCCGGW	1 cut(s)	803
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	4 cut(s)	403, 420, 2549, 2941
Bse3DI	GCAATG	3 cut(s)	540, 1627, 1983
Bse8I	GATNNNNATC	1 cut(s)	1551
BseAI	TCCGGA	1 cut(s)	803
BseBI	CCWGG	6 cut(s)	1134, 1308, 1594, 1671, 1844, 2011
BseDI	CCNNGG	4 cut(s)	670, 1593, 1670, 2159
BseGI	GGATG	7 cut(s)	286, 877, 1066, 1493, 1889, 2494, 2977
BseJI	GATNNNNATC	1 cut(s)	1551
BseLI	CCNNNNNNNGG	4 cut(s)	403, 420, 2549, 2941
BseMI	GCAATG	3 cut(s)	540, 1627, 1983
BseMII	CTCAG	2 cut(s)	2345, 2535
BseRI	GAGGAG	3 cut(s)	110, 326, 2962
BseSI	GKGCMC	2 cut(s)	79, 1600
BsgI	GTGCAG	4 cut(s)	1257, 1395, 2043, 2118
Bsh1236I	CGCG	1 cut(s)	748
Bsh1285I	CGRYCG	1 cut(s)	737
BshFI	GGCC	8 cut(s)	192, 222, 669, 732, 988, 1598, 1829, 1922
BshNI	GGYRCC	3 cut(s)	1129, 1303, 3051
BsiEI	CGRYCG	1 cut(s)	737
BsiHKAI	GWGCWC	2 cut(s)	1569, 2332
BsiHKCI	CYCGRG	1 cut(s)	576
BsiSI	CCGG	3 cut(s)	672, 804, 1923
BslFI	GGGAC	5 cut(s)	377, 1588, 1687, 1798, 2177
BslI	CCNNNNNNNGG	4 cut(s)	403, 420, 2549, 2941
BsmFI	GGGAC	5 cut(s)	377, 1588, 1687, 1798, 2177
BsnI	GGCC	8 cut(s)	192, 222, 669, 732, 988, 1598, 1829, 1922
BsoBI	CYCGRG	1 cut(s)	576
Bsp120I	GGGCCC	1 cut(s)	1596
Bsp1286I	GDGCHC	4 cut(s)	79, 1569, 1600, 2332
Bsp13I	TCCGGA	1 cut(s)	803
Bsp19I	CCATGG	1 cut(s)	2159
BspACI	CCGC	3 cut(s)	193, 525, 683
BspANI	GGCC	8 cut(s)	192, 222, 669, 732, 988, 1598, 1829, 1922
BspCNI	CTCAG	2 cut(s)	2346, 2536
BspEI	TCCGGA	1 cut(s)	803
BspFNI	CGCG	1 cut(s)	748
BspOI	GCTAGC	2 cut(s)	596, 1007
BspPI	GGATC	3 cut(s)	156, 620, 1894
BspQI	GCTCTTC	2 cut(s)	1972, 3129
BspT107I	GGYRCC	3 cut(s)	1129, 1303, 3051
BsrDI	GCAATG	3 cut(s)	540, 1627, 1983
BssECI	CCNNGG	4 cut(s)	670, 1593, 1670, 2159
BssNAI	GTATAC	1 cut(s)	1445
BssT1I	CCWWGG	1 cut(s)	2159
Bst1107I	GTATAC	1 cut(s)	1445
Bst2UI	CCWGG	6 cut(s)	1134, 1308, 1594, 1671, 1844, 2011
Bst6I	CTCTTC	4 cut(s)	160, 805, 1972, 3129
BstAPI	GCANNNNNTGC	1 cut(s)	511
BstDEI	CTNAG	3 cut(s)	617, 2354, 2544
BstDSI	CCRYGG	1 cut(s)	2159
BstEII	GGTNACC	1 cut(s)	1310
BstENI	CCTNNNNNAGG	1 cut(s)	418
BstF5I	GGATG	7 cut(s)	286, 877, 1066, 1493, 1889, 2494, 2977
BstFNI	CGCG	1 cut(s)	748
BstHHI	GCGC	2 cut(s)	598, 1965
BstMCI	CGRYCG	1 cut(s)	737
BstMWI	GCNNNNNNNGC	9 cut(s)	189, 511, 598, 1118, 1292, 1753, 1861, 2057, 3088
BstNI	CCWGG	6 cut(s)	1134, 1308, 1594, 1671, 1844, 2011
BstNSI	RCATGY	6 cut(s)	120, 372, 1714, 2140, 2523, 2862
BstPI	GGTNACC	1 cut(s)	1310
BstSCI	CCNGG	7 cut(s)	670, 1132, 1306, 1592, 1669, 1842, 2009
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	2 cut(s)	79, 1600
BstUI	CGCG	1 cut(s)	748
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	2107
BstYI	RGATCY	1 cut(s)	2107
BstZ17I	GTATAC	1 cut(s)	1445
BsuI	GTATCC	1 cut(s)	321
BsuRI	GGCC	8 cut(s)	192, 222, 669, 732, 988, 1598, 1829, 1922
BtgI	CCRYGG	1 cut(s)	2159
BtsCI	GGATG	7 cut(s)	286, 877, 1066, 1493, 1889, 2494, 2977
BtsI	GCAGTG	2 cut(s)	1690, 2101
BtsIMutI	CAGTG	6 cut(s)	1378, 1465, 1690, 1801, 2101, 3004
CfoI	GCGC	2 cut(s)	598, 1965
Cfr13I	GGNCC	7 cut(s)	190, 411, 668, 752, 986, 1596, 1597
CsiI	ACCWGGT	2 cut(s)	1132, 1306
DdeI	CTNAG	3 cut(s)	617, 2354, 2544
EaeI	YGGCCR	3 cut(s)	730, 1827, 1920
Eam1104I	CTCTTC	4 cut(s)	160, 805, 1972, 3129
EarI	CTCTTC	4 cut(s)	160, 805, 1972, 3129
EciI	GGCGGA	1 cut(s)	514
Ecl136II	GAGCTC	1 cut(s)	1567
Eco130I	CCWWGG	1 cut(s)	2159
Eco24I	GRGCYC	2 cut(s)	1569, 1600
Eco47I	GGWCC	2 cut(s)	411, 752
Eco53kI	GAGCTC	1 cut(s)	1567
Eco57I	CTGAAG	3 cut(s)	452, 1844, 3110
Eco88I	CYCGRG	1 cut(s)	576
Eco91I	GGTNACC	1 cut(s)	1310
EcoICRI	GAGCTC	1 cut(s)	1567
EcoNI	CCTNNNNNAGG	1 cut(s)	418
EcoO109I	RGGNCCY	2 cut(s)	668, 1596
EcoO65I	GGTNACC	1 cut(s)	1310
EcoRI	GAATTC	1 cut(s)	2683
EcoRII	CCWGG	6 cut(s)	1132, 1306, 1592, 1669, 1842, 2009
EcoT14I	CCWWGG	1 cut(s)	2159
EcoT22I	ATGCAT	1 cut(s)	2236
EcoT38I	GRGCYC	2 cut(s)	1569, 1600
ErhI	CCWWGG	1 cut(s)	2159
FalI	AAGNNNNNCTT	4 cut(s)	157, 189, 2580, 2612
FaqI	GGGAC	5 cut(s)	377, 1588, 1687, 1798, 2177
FauNDI	CATATG	1 cut(s)	757
FbaI	TGATCA	2 cut(s)	2656, 3070
FblI	GTMKAC	1 cut(s)	1444
FokI	GGATG	7 cut(s)	293, 884, 1053, 1480, 1876, 2501, 2984
FriOI	GRGCYC	2 cut(s)	1569, 1600
GlaI	GCGC	2 cut(s)	597, 1964
GsuI	CTGGAG	1 cut(s)	1086
HaeIII	GGCC	8 cut(s)	192, 222, 669, 732, 988, 1598, 1829, 1922
HapII	CCGG	3 cut(s)	672, 804, 1923
HhaI	GCGC	2 cut(s)	598, 1965
Hin6I	GCGC	2 cut(s)	596, 1963
HinP1I	GCGC	2 cut(s)	596, 1963
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	2 cut(s)	1026, 1200
HinfI	GANTC	6 cut(s)	154, 839, 905, 941, 1376, 1634
HpaII	CCGG	3 cut(s)	672, 804, 1923
HpyAV	CCTTC	6 cut(s)	180, 467, 759, 1151, 1325, 2825
HpyCH4IV	ACGT	1 cut(s)	2208
HpyF10VI	GCNNNNNNNGC	9 cut(s)	189, 511, 598, 1118, 1292, 1753, 1861, 2057, 3088
HpyF3I	CTNAG	3 cut(s)	617, 2354, 2544
HpySE526I	ACGT	1 cut(s)	2208
HspAI	GCGC	2 cut(s)	596, 1963
Kpn2I	TCCGGA	1 cut(s)	803
KpnI	GGTACC	3 cut(s)	1133, 1307, 3055
Ksp22I	TGATCA	2 cut(s)	2656, 3070
LguI	GCTCTTC	2 cut(s)	1972, 3129
LmnI	GCTCC	8 cut(s)	313, 1099, 1105, 1273, 1564, 2085, 2340, 3061
LweI	GCATC	4 cut(s)	954, 1138, 1393, 2009
MabI	ACCWGGT	2 cut(s)	1132, 1306
MaeII	ACGT	1 cut(s)	2208
MfeI	CAATTG	1 cut(s)	2843
MflI	RGATCY	1 cut(s)	2107
MhlI	GDGCHC	4 cut(s)	79, 1569, 1600, 2332
MlsI	TGGCCA	1 cut(s)	1829
MluNI	TGGCCA	1 cut(s)	1829
MlyI	GAGTC	2 cut(s)	148, 1643
MmeI	TCCRAC	2 cut(s)	1611, 1917
Mox20I	TGGCCA	1 cut(s)	1829
Mph1103I	ATGCAT	1 cut(s)	2236
MroI	TCCGGA	1 cut(s)	803
MroXI	GAANNNNTTC	1 cut(s)	636
MscI	TGGCCA	1 cut(s)	1829
MseI	TTAA	5 cut(s)	429, 833, 2211, 2268, 2769
MslI	CAYNNNNRTG	6 cut(s)	1401, 1452, 1644, 2202, 2579, 2863
Msp20I	TGGCCA	1 cut(s)	1829
MspA1I	CMGCKG	2 cut(s)	2485, 3130
MspI	CCGG	3 cut(s)	672, 804, 1923
MspR9I	CCNGG	7 cut(s)	672, 1134, 1308, 1594, 1671, 1844, 2011
MunI	CAATTG	1 cut(s)	2843
MvaI	CCWGG	6 cut(s)	1134, 1308, 1594, 1671, 1844, 2011
MvnI	CGCG	1 cut(s)	748
MwoI	GCNNNNNNNGC	9 cut(s)	189, 511, 598, 1118, 1292, 1753, 1861, 2057, 3088
NciI	CCSGG	1 cut(s)	672
NcoI	CCATGG	1 cut(s)	2159
NdeI	CATATG	1 cut(s)	757
NheI	GCTAGC	2 cut(s)	592, 1003
NmuCI	GTSAC	7 cut(s)	131, 1160, 1310, 1523, 1635, 1838, 2144
NsiI	ATGCAT	1 cut(s)	2236
NspI	RCATGY	6 cut(s)	120, 372, 1714, 2140, 2523, 2862
PaeI	GCATGC	1 cut(s)	120
PaeR7I	CTCGAG	1 cut(s)	576
PciI	ACATGT	3 cut(s)	1710, 2519, 2858
PciSI	GCTCTTC	2 cut(s)	1972, 3129
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	4 cut(s)	839, 905, 941, 1376
PflMI	CCANNNNNTGG	1 cut(s)	2941
PfoI	TCCNGGA	1 cut(s)	2009
PleI	GAGTC	2 cut(s)	148, 1642
PpsI	GAGTC	2 cut(s)	148, 1642
PscI	ACATGT	3 cut(s)	1710, 2519, 2858
Psp124BI	GAGCTC	1 cut(s)	1569
Psp6I	CCWGG	6 cut(s)	1132, 1306, 1592, 1669, 1842, 2009
PspEI	GGTNACC	1 cut(s)	1310
PspGI	CCWGG	6 cut(s)	1132, 1306, 1592, 1669, 1842, 2009
PspOMI	GGGCCC	1 cut(s)	1596
PspPI	GGNCC	7 cut(s)	190, 411, 668, 752, 986, 1596, 1597
PspXI	VCTCGAGB	1 cut(s)	576
PsuI	RGATCY	1 cut(s)	2107
PvuII	CAGCTG	2 cut(s)	2485, 3130
RseI	CAYNNNNRTG	6 cut(s)	1401, 1452, 1644, 2202, 2579, 2863
SacI	GAGCTC	1 cut(s)	1569
SapI	GCTCTTC	2 cut(s)	1972, 3129
SaqAI	TTAA	5 cut(s)	429, 833, 2211, 2268, 2769
Sau96I	GGNCC	7 cut(s)	190, 411, 668, 752, 986, 1596, 1597
ScaI	AGTACT	4 cut(s)	1780, 1882, 2629, 3043
SchI	GAGTC	2 cut(s)	148, 1643
ScrFI	CCNGG	7 cut(s)	672, 1134, 1308, 1594, 1671, 1844, 2011
SduI	GDGCHC	4 cut(s)	79, 1569, 1600, 2332
SexAI	ACCWGGT	2 cut(s)	1132, 1306
SfaNI	GCATC	4 cut(s)	954, 1138, 1393, 2009
SfcI	CTRYAG	1 cut(s)	177
Sfr274I	CTCGAG	1 cut(s)	576
SinI	GGWCC	2 cut(s)	411, 752
SlaI	CTCGAG	1 cut(s)	576
SmiMI	CAYNNNNRTG	6 cut(s)	1401, 1452, 1644, 2202, 2579, 2863
SmlI	CTYRAG	6 cut(s)	332, 399, 576, 1056, 1230, 2635
SmoI	CTYRAG	6 cut(s)	332, 399, 576, 1056, 1230, 2635
SpeI	ACTAGT	1 cut(s)	1835
SphI	GCATGC	1 cut(s)	120
SsiI	CCGC	3 cut(s)	193, 525, 683
SstI	GAGCTC	1 cut(s)	1569
StyD4I	CCNGG	7 cut(s)	670, 1132, 1306, 1592, 1669, 1842, 2009
StyI	CCWWGG	1 cut(s)	2159
TaiI	ACGT	1 cut(s)	2211
TaqI	TCGA	7 cut(s)	269, 551, 577, 827, 1146, 1320, 2921
TaqII	GACCGA	1 cut(s)	751
TauI	GCSGC	2 cut(s)	195, 685
TfiI	GAWTC	4 cut(s)	839, 905, 941, 1376
Tru1I	TTAA	5 cut(s)	429, 833, 2211, 2268, 2769
Tru9I	TTAA	5 cut(s)	429, 833, 2211, 2268, 2769
TscAI	CASTG	6 cut(s)	1378, 1465, 1690, 1801, 2101, 3004
TseFI	GTSAC	7 cut(s)	131, 1160, 1310, 1523, 1635, 1838, 2144
Tsp45I	GTSAC	7 cut(s)	131, 1160, 1310, 1523, 1635, 1838, 2144
TspGWI	ACGGA	1 cut(s)	1634
TspRI	CASTG	6 cut(s)	1378, 1465, 1690, 1801, 2101, 3004
Van91I	CCANNNNNTGG	1 cut(s)	2941
VpaK11BI	GGWCC	2 cut(s)	411, 752
XagI	CCTNNNNNAGG	1 cut(s)	418
XapI	RAATTY	3 cut(s)	81, 979, 2683
XbaI	TCTAGA	1 cut(s)	2131
XceI	RCATGY	6 cut(s)	120, 372, 1714, 2140, 2523, 2862
XhoI	CTCGAG	1 cut(s)	576
XmiI	GTMKAC	1 cut(s)	1444
XmnI	GAANNNNTTC	1 cut(s)	636
ZrmI	AGTACT	4 cut(s)	1780, 1882, 2629, 3043
Zsp2I	ATGCAT	1 cut(s)	2236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.