Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0016297

Physical Location & Seq

Genomic Coordinates Reverse (-)

80384861 .. 80390071

Gene Structure 5211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG517100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3183 bp

ATGCCTTGCAGCCAAAATATATATAATACAGGGGTGAAAATGGAAAGTGGAGGTGAGGTAAAACGAAGAAAGAGTGCCCGAATTTCAGCATTAGAGGAGGAAAAGAGGAACAAAGCATGCACCGTAGACAGTGACAATGTTAGCGAGGATCAGACTCATGTTAGAAGAGGAACTTCTACAGGCAGGAGGGGCCGCAAGCGAAAAAGACTTGAAGATGTTGGCCTATCATCTCCACAGGATAGTGAAGACCCAAAAGATGAAGATTATTCGATCTACGAGGATGAAGCAGCATATCTGTCATATATACAGGAGGAGCCTGAAACTCGGATACTCGAGTTTATCCTTGATATACTGCAAAGGAGGGACACATGCAACTTATTCGAAAAGCCTGTTGACCCTCAAGAGGTTTGGACCTATTACAGGATTATTAAAGAGCCAATGGATTTTGGAACCATAAGGACAAAACTTCAGGAAGGAAAATATACAAGCTTACAACAGTTTGAGCATGATGTGCATCTAATATCCGCCAATGCAATGCACTTCAATTCATCGACCACCGTTTTTTACCAAGAGGCTCGAGGTATACAAGAGCTAGCGCAGCAGCTTTTCCAATCTCTAAGAGCTGATCCAGAACAGTTTCAGTTACAATTCTTACTGACAAAAAGAGGCCCTGGTAGGAAGCCGCAAAATCAAGGCAGAGGTTCACATAGAAACGTTCCTAGACCAGTTGGCCGACCGAGTTCCTCGCGTGGTCCATATGTTAGAAGGAAAAGTCAAGCAGGCTCATCTAATGCAAACTCTTCCGGAATGAGAAATGGTAGAAACTCGAACTTAATGGAATCAGAGAGGCGTGAAACTTATAGGCTTTCGGATGAGGATAAATCATTATTATCAGTTGTCCATGATTCTGCAAAGATACTTCTTCATGTTGATAATGGTGATTCTGGATATAAAGAAAGTTTGATGCAGTTTGCTAAAAATTTGGGGCCAACAGCTCAAATGCTAGCTGAAAGTAAGTTGGTACAAGCTTTCAGCCAACCTCCGAATTGCCAGCCTCAAGCCACTCGTCCAATACAAACCCAGAACTACATGGCTCCTGCTCCAGTCCTAGCTTTGCCAGCACCAGAGGTACCTGGTCACCTTCTCGATGCTAACAATGGTCACATACATCGTAGTTCCCCATATTACGTGCCCAACAGTGATTCAAGTGAAAGTAAGTTGGCACAAGCTTTCAGCCAACCTCCGAATTGCCAGCCTCAAGCCAACTATCCAATACAGAGCCAAAACTACATGGCTTCTGCACCAGTCCTAGCTTTGCCAGCACCAGAGGTACCTGGTCACCTTCTCGATGGTAACATTAATGGTCAAATACATCGTGGTTCCCCATATTACTTGCCCAACATTGATTCAAGTGCTTCATATTTTCACGGTGATGCTTCTGCGCAAGGATATGCAAGAGCCACCAACGGTGGTATACATATAAATGACAGTGCTAACAGGAGAAACATGAACCCTCCTAGCACATCCCAGTTAGGCATGCTTCCGAACTATCGTGACAAGGGAAAAATGGTTGTTGATCTAAATCAAAACATGGAGCTCGTAGGGCCTGGTGATACAGAAGCCAGGGCCCATTCTCAAAATGTAAACAGCAATGTTCGGTTGGAGTCACATATCCGTGTTGTTAGAGATTTCAGTAGTCCTGGGACTTCAAGCAGTGGCATGAAGTTCAGGGCTGTGGACATGTTGGGCAAGCCTAACCCCCTAGAAAACCAGCAGCAGTTTCAGCAAGCTCATCAGTTGCCTAGTAGTACTGGGACTTCAAACAGTGGCATACTCTCTTGGGCCGTGAATAGGTTGGCCAATACTAGTCGCCGGGAAAACCAGCAGCTTCAGCCAGCTCAGTTGTCTAGTACTGGATCATCCAACCAGTCAAGTTTACTAGAGATCATGGCCGGAAGAAGTACCTATTTGAAGCCATCATCATCTTCGTTGCGCTCTTCATCTGCAATGTTATCAAGTTTGAGTGAGGCATCAACCTCCTGGAATGATTTTGGCTCACACCTGAACAACAACAATGCAGCTAAATCTGCACAGACAGGTCAGCAGCTTCAATGGAGCCAACGCAGTGCAGAACAAGATCTGCAAGAAAATTGTAGCTTTCTAGAAATGCTTGGTGACGGCTGTAACCCATGGGACAAGAGTAGTACACTTCTGAGAAACGAACAACATCTTGATGACGTTAATTATTCTTTGGGAAGTAATGCATTTATGAGAAATGAACAACAGCTTGGAGAGGTTAATTGTCAATCGGGGAACAGTACATCAATGAGAAATGAACAACTGTTTGGTGAGGGTGGTGCTCAATGGGGGAGCAATACATTTCTGAGGAAAGAACAACATCTTGCCGACAGCAACTTTCCTCTGGAAAACAATACATTTTTGAGGAAAGAACAACAGCTCAATGGGGGTAACTTTCTGTTGGGGAATGGTACATTTATGAGGAAAGAGCAACAGCTGGATGTGGAGAACTTTCACTTGGGGAATAGTACAGGTTTGAGTAAAGAGAAACAGCCTGAGAATGGCAACTTCCAAGTGGGAAATAGCACATTTATGAGGAAAGACCAACTTGATGAAGCTAATTTCCAATTTGGGAATAGTACTTTCTTGAGGACAGCACAACAGTTTGATCAGGGTACTTTTCTACTGGGGAAGAATTCATTTATGAGCAAAGAACCACAGCTTCATCGTGGTAATGTTCAAATGGGGAATAGTACATTTATGAGCAAAGAACAACTGCTTAATGAGGGTACTTTCAGACAGGGGAACAGTACCTTTATGAGCAGAGAACAACAACTTGGTGAAGGTTCTTTTCAATTGGGGAACAGTACATGTATGTGGACAGAGCAACAGATTGATGAGGTCAATCACCAATGGTGGAATAGTACATTTTCGAGGACCAGTACATTTTCGAGGAAAGGCCACCAATATCTGGGGAGGAGTGAACAACAGCAGCCTGTGGATGAGGGAGTAATGCCTGACTGGTACAGTGCAATATGTTCTGCCAATGAAAGAGCTACTAGTAGTAGTAGTACTCAATGGTACCAAAAGGAGCCTATTGATCAATCTTTGCTGCCCTTGCTCTTGGTGGACAATCAGCAGCCTAACTTGGCTCTTCAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

1060

Amino Acids

118.55

Weight (kDa)

6.28

Isoelectric Point (pI)

56.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	112 - 193	4.8e-21	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016297)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41110
malus_domestica	MD03G1047400.v1.1 MD11G1049900.v1.1
pyrus_communis	pycom11g04050
rosa_chinensis	RchiOBHm_Chr5g0073891
rosa_laevigata	RLG00000036422
rosa_multiflora	Rmu_co8433661.1_g000001 Rmu_sc0000470.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007480
rosa_rugosa	Rorug05G0427100
rosa_samantha	Rh5AG484100 Rh5BG504800 Rh5CG528600 Rh5DG517100
rosa_wichuraiana	Rw5G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1443
Acc65I	GGTACC	3 cut(s)	1129, 1330, 3099
AccB1I	GGYRCC	3 cut(s)	1129, 1330, 3099
AccB7I	CCANNNNNTGG	1 cut(s)	2989
AccI	GTMKAC	3 cut(s)	126, 583, 1474
AccII	CGCG	1 cut(s)	748
AccIII	TCCGGA	1 cut(s)	803
AciI	CCGC	3 cut(s)	193, 525, 683
AclI	AACGTT	1 cut(s)	714
AclWI	GGATC	3 cut(s)	156, 620, 1924
AcoI	YGGCCR	3 cut(s)	730, 1857, 1950
AcsI	RAATTY	3 cut(s)	81, 979, 2713
AcuI	CTGAAG	3 cut(s)	452, 1874, 3158
AfiI	CCNNNNNNNGG	5 cut(s)	403, 420, 1851, 2579, 2989
AflIII	ACRYGT	2 cut(s)	1740, 2888
AhlI	ACTAGT	2 cut(s)	1865, 3077
AjnI	CCWGG	7 cut(s)	670, 1132, 1333, 1606, 1622, 1699, 2039
AjuI	GAANNNNNNNTTGG	8 cut(s)	2271, 2303, 2328, 2360, 2519, 2551, 2838, 2870
Alw21I	GWGCWC	2 cut(s)	1599, 2362
AlwI	GGATC	3 cut(s)	156, 620, 1924
Ama87I	CYCGRG	2 cut(s)	332, 576
Aor13HI	TCCGGA	1 cut(s)	803
ApaI	GGGCCC	1 cut(s)	1630
ApoI	RAATTY	3 cut(s)	81, 979, 2713
AseI	ATTAAT	1 cut(s)	1359
Asp700I	GAANNNNTTC	1 cut(s)	636
Asp718I	GGTACC	3 cut(s)	1129, 1330, 3099
AspLEI	GCGC	3 cut(s)	598, 1444, 1995
AsuC2I	CCSGG	1 cut(s)	1874
AsuII	TTCGAA	1 cut(s)	381
AsuNHI	GCTAGC	2 cut(s)	592, 1003
AvaI	CYCGRG	2 cut(s)	332, 576
AvaII	GGWCC	3 cut(s)	411, 752, 2955
BaeGI	GKGCMC	3 cut(s)	79, 1194, 1630
BaeI	ACNNNNGTAYC	2 cut(s)	320, 353
BalI	TGGCCA	1 cut(s)	1859
BanI	GGYRCC	3 cut(s)	1129, 1330, 3099
BanII	GRGCYC	2 cut(s)	1599, 1630
BarI	GAAGNNNNNNTAC	2 cut(s)	1801, 1833
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	1599, 2362
BccI	CCATC	2 cut(s)	1343, 1984
BceAI	ACGGC	2 cut(s)	1829, 2194
BcgI	CGANNNNNNTGC	2 cut(s)	361, 395
BciT130I	CCWGG	7 cut(s)	672, 1134, 1335, 1608, 1624, 1701, 2041
BciVI	GTATCC	1 cut(s)	321
BclI	TGATCA	2 cut(s)	2686, 3118
BcnI	CCSGG	1 cut(s)	1874
BcuI	ACTAGT	2 cut(s)	1865, 3077
BfmI	CTRYAG	1 cut(s)	177
BfuI	GTATCC	1 cut(s)	321
BglII	AGATCT	1 cut(s)	2137
BmcAI	AGTACT	4 cut(s)	1810, 1912, 2659, 3091
Bme1390I	CCNGG	8 cut(s)	672, 1134, 1335, 1608, 1624, 1701, 1874, 2041
Bme18I	GGWCC	3 cut(s)	411, 752, 2955
BmeT110I	CYCGRG	2 cut(s)	332, 576
BmrFI	CCNGG	8 cut(s)	672, 1134, 1335, 1608, 1624, 1701, 1874, 2041
BmrI	ACTGGG	3 cut(s)	1522, 1821, 2714
BmsI	GCATC	5 cut(s)	523, 954, 1138, 1423, 2039
BmtI	GCTAGC	2 cut(s)	596, 1007
BmuI	ACTGGG	3 cut(s)	1522, 1821, 2714
BpiI	GAAGAC	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	1086
Bpu14I	TTCGAA	1 cut(s)	381
BpuEI	CTTGAG	4 cut(s)	384, 1041, 1242, 2686
BpuMI	CCSGG	1 cut(s)	1874
BsaAI	YACGTR	1 cut(s)	1189
BsaBI	GATNNNNATC	2 cut(s)	513, 1581
BsaJI	CCNNGG	4 cut(s)	670, 1623, 1700, 2189
BsaWI	WCCGGW	1 cut(s)	803
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	5 cut(s)	403, 420, 1851, 2579, 2989
Bse3DI	GCAATG	3 cut(s)	540, 1657, 2013
Bse8I	GATNNNNATC	2 cut(s)	513, 1581
BseAI	TCCGGA	1 cut(s)	803
BseBI	CCWGG	7 cut(s)	672, 1134, 1335, 1608, 1624, 1701, 2041
BseDI	CCNNGG	4 cut(s)	670, 1623, 1700, 2189
BseGI	GGATG	6 cut(s)	286, 877, 1523, 1919, 2524, 3025
BseJI	GATNNNNATC	2 cut(s)	513, 1581
BseLI	CCNNNNNNNGG	5 cut(s)	403, 420, 1851, 2579, 2989
BseMI	GCAATG	3 cut(s)	540, 1657, 2013
BseMII	CTCAG	4 cut(s)	1913, 2204, 2375, 2565
BseRI	GAGGAG	3 cut(s)	110, 326, 3010
BseSI	GKGCMC	3 cut(s)	79, 1194, 1630
BsgI	GTGCAG	3 cut(s)	1284, 2073, 2148
Bsh1236I	CGCG	1 cut(s)	748
Bsh1285I	CGRYCG	1 cut(s)	737
BshNI	GGYRCC	3 cut(s)	1129, 1330, 3099
BsiEI	CGRYCG	1 cut(s)	737
BsiHKAI	GWGCWC	2 cut(s)	1599, 2362
BsiHKCI	CYCGRG	2 cut(s)	332, 576
BsiSI	CCGG	3 cut(s)	804, 1873, 1953
BslFI	GGGAC	4 cut(s)	377, 1717, 1828, 2207
BslI	CCNNNNNNNGG	5 cut(s)	403, 420, 1851, 2579, 2989
BsmFI	GGGAC	4 cut(s)	377, 1717, 1828, 2207
BsoBI	CYCGRG	2 cut(s)	332, 576
Bsp119I	TTCGAA	1 cut(s)	381
Bsp120I	GGGCCC	1 cut(s)	1626
Bsp1286I	GDGCHC	5 cut(s)	79, 1194, 1599, 1630, 2362
Bsp13I	TCCGGA	1 cut(s)	803
Bsp143I	GATC	9 cut(s)	148, 270, 625, 1576, 1916, 1944, 2137, 2686, 3118
Bsp19I	CCATGG	1 cut(s)	2189
BspACI	CCGC	3 cut(s)	193, 525, 683
BspCNI	CTCAG	4 cut(s)	1912, 2205, 2376, 2566
BspEI	TCCGGA	1 cut(s)	803
BspFNI	CGCG	1 cut(s)	748
BspOI	GCTAGC	2 cut(s)	596, 1007
BspPI	GGATC	3 cut(s)	156, 620, 1924
BspQI	GCTCTTC	2 cut(s)	2002, 3177
BspT104I	TTCGAA	1 cut(s)	381
BspT107I	GGYRCC	3 cut(s)	1129, 1330, 3099
BsrDI	GCAATG	3 cut(s)	540, 1657, 2013
BssECI	CCNNGG	4 cut(s)	670, 1623, 1700, 2189
BssMI	GATC	9 cut(s)	148, 270, 625, 1576, 1916, 1944, 2137, 2686, 3118
BssNAI	GTATAC	2 cut(s)	584, 1475
BssT1I	CCWWGG	1 cut(s)	2189
Bst1107I	GTATAC	2 cut(s)	584, 1475
Bst2UI	CCWGG	7 cut(s)	672, 1134, 1335, 1608, 1624, 1701, 2041
Bst6I	CTCTTC	4 cut(s)	160, 805, 2002, 3177
BstAPI	GCANNNNNTGC	1 cut(s)	511
BstBAI	YACGTR	1 cut(s)	1189
BstBI	TTCGAA	1 cut(s)	381
BstDEI	CTNAG	5 cut(s)	617, 1899, 2213, 2384, 2574
BstDSI	CCRYGG	1 cut(s)	2189
BstEII	GGTNACC	2 cut(s)	1136, 1337
BstENI	CCTNNNNNAGG	1 cut(s)	418
BstF5I	GGATG	6 cut(s)	286, 877, 1523, 1919, 2524, 3025
BstFNI	CGCG	1 cut(s)	748
BstHHI	GCGC	3 cut(s)	598, 1444, 1995
BstKTI	GATC	9 cut(s)	151, 273, 628, 1579, 1919, 1947, 2140, 2689, 3121
BstMBI	GATC	9 cut(s)	148, 270, 625, 1576, 1916, 1944, 2137, 2686, 3118
BstMCI	CGRYCG	1 cut(s)	737
BstNI	CCWGG	7 cut(s)	672, 1134, 1335, 1608, 1624, 1701, 2041
BstNSI	RCATGY	5 cut(s)	120, 372, 1540, 1744, 2892
BstPI	GGTNACC	2 cut(s)	1136, 1337
BstSCI	CCNGG	8 cut(s)	670, 1132, 1333, 1606, 1622, 1699, 1872, 2039
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	3 cut(s)	79, 1194, 1630
BstUI	CGCG	1 cut(s)	748
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	2137
BstYI	RGATCY	1 cut(s)	2137
BstZ17I	GTATAC	2 cut(s)	584, 1475
BsuI	GTATCC	1 cut(s)	321
BtgI	CCRYGG	1 cut(s)	2189
BtsCI	GGATG	6 cut(s)	286, 877, 1523, 1919, 2524, 3025
BtsI	GCAGTG	2 cut(s)	1720, 2131
BtsIMutI	CAGTG	7 cut(s)	136, 1204, 1495, 1720, 1831, 2131, 3052
CfoI	GCGC	3 cut(s)	598, 1444, 1995
CsiI	ACCWGGT	2 cut(s)	1132, 1333
DdeI	CTNAG	5 cut(s)	617, 1899, 2213, 2384, 2574
DpnI	GATC	9 cut(s)	150, 272, 627, 1578, 1918, 1946, 2139, 2688, 3120
DpnII	GATC	9 cut(s)	148, 270, 625, 1576, 1916, 1944, 2137, 2686, 3118
EaeI	YGGCCR	3 cut(s)	730, 1857, 1950
Eam1104I	CTCTTC	4 cut(s)	160, 805, 2002, 3177
EarI	CTCTTC	4 cut(s)	160, 805, 2002, 3177
EciI	GGCGGA	1 cut(s)	514
Ecl136II	GAGCTC	1 cut(s)	1597
Eco130I	CCWWGG	1 cut(s)	2189
Eco24I	GRGCYC	2 cut(s)	1599, 1630
Eco47I	GGWCC	3 cut(s)	411, 752, 2955
Eco53kI	GAGCTC	1 cut(s)	1597
Eco57I	CTGAAG	3 cut(s)	452, 1874, 3158
Eco88I	CYCGRG	2 cut(s)	332, 576
Eco91I	GGTNACC	2 cut(s)	1136, 1337
EcoICRI	GAGCTC	1 cut(s)	1597
EcoNI	CCTNNNNNAGG	1 cut(s)	418
EcoO109I	RGGNCCY	3 cut(s)	668, 1604, 1626
EcoO65I	GGTNACC	2 cut(s)	1136, 1337
EcoRI	GAATTC	1 cut(s)	2713
EcoRII	CCWGG	7 cut(s)	670, 1132, 1333, 1606, 1622, 1699, 2039
EcoT14I	CCWWGG	1 cut(s)	2189
EcoT22I	ATGCAT	1 cut(s)	2266
EcoT38I	GRGCYC	2 cut(s)	1599, 1630
ErhI	CCWWGG	1 cut(s)	2189
FalI	AAGNNNNNCTT	4 cut(s)	157, 189, 2610, 2642
FaqI	GGGAC	4 cut(s)	377, 1717, 1828, 2207
FauNDI	CATATG	1 cut(s)	757
FbaI	TGATCA	2 cut(s)	2686, 3118
FblI	GTMKAC	3 cut(s)	126, 583, 1474
FokI	GGATG	6 cut(s)	293, 884, 1510, 1906, 2531, 3032
FriOI	GRGCYC	2 cut(s)	1599, 1630
FspI	TGCGCA	1 cut(s)	1443
GlaI	GCGC	3 cut(s)	597, 1443, 1994
GsuI	CTGGAG	1 cut(s)	1086
HapII	CCGG	3 cut(s)	804, 1873, 1953
HhaI	GCGC	3 cut(s)	598, 1444, 1995
Hin6I	GCGC	3 cut(s)	596, 1442, 1993
HinP1I	GCGC	3 cut(s)	596, 1442, 1993
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	3 cut(s)	487, 1026, 1227
HinfI	GANTC	7 cut(s)	154, 839, 905, 941, 1202, 1406, 1664
HpaII	CCGG	3 cut(s)	804, 1873, 1953
HpyAV	CCTTC	5 cut(s)	467, 759, 1151, 1352, 2855
HpyCH4IV	ACGT	3 cut(s)	714, 1188, 2238
HpyF3I	CTNAG	5 cut(s)	617, 1899, 2213, 2384, 2574
HpySE526I	ACGT	3 cut(s)	714, 1188, 2238
HspAI	GCGC	3 cut(s)	596, 1442, 1993
Kpn2I	TCCGGA	1 cut(s)	803
KpnI	GGTACC	3 cut(s)	1133, 1334, 3103
Ksp22I	TGATCA	2 cut(s)	2686, 3118
Kzo9I	GATC	9 cut(s)	148, 270, 625, 1576, 1916, 1944, 2137, 2686, 3118
LguI	GCTCTTC	2 cut(s)	2002, 3177
LmnI	GCTCC	7 cut(s)	313, 1099, 1105, 1594, 2115, 2370, 3109
LweI	GCATC	5 cut(s)	523, 954, 1138, 1423, 2039
MabI	ACCWGGT	2 cut(s)	1132, 1333
MaeII	ACGT	3 cut(s)	714, 1188, 2238
MalI	GATC	9 cut(s)	150, 272, 627, 1578, 1918, 1946, 2139, 2688, 3120
MboI	GATC	9 cut(s)	148, 270, 625, 1576, 1916, 1944, 2137, 2686, 3118
MfeI	CAATTG	1 cut(s)	2873
MflI	RGATCY	1 cut(s)	2137
MhlI	GDGCHC	5 cut(s)	79, 1194, 1599, 1630, 2362
MlsI	TGGCCA	1 cut(s)	1859
MluNI	TGGCCA	1 cut(s)	1859
MlyI	GAGTC	2 cut(s)	148, 1673
MmeI	TCCRAC	2 cut(s)	1641, 1947
Mox20I	TGGCCA	1 cut(s)	1859
Mph1103I	ATGCAT	1 cut(s)	2266
MroI	TCCGGA	1 cut(s)	803
MroXI	GAANNNNTTC	1 cut(s)	636
MscI	TGGCCA	1 cut(s)	1859
MseI	TTAA	6 cut(s)	429, 833, 1359, 2241, 2298, 2799
MslI	CAYNNNNRTG	6 cut(s)	1431, 1482, 1674, 2232, 2609, 2893
Msp20I	TGGCCA	1 cut(s)	1859
MspA1I	CMGCKG	2 cut(s)	2515, 3178
MspI	CCGG	3 cut(s)	804, 1873, 1953
MspR9I	CCNGG	8 cut(s)	672, 1134, 1335, 1608, 1624, 1701, 1874, 2041
MunI	CAATTG	1 cut(s)	2873
MvaI	CCWGG	7 cut(s)	672, 1134, 1335, 1608, 1624, 1701, 2041
MvnI	CGCG	1 cut(s)	748
NciI	CCSGG	1 cut(s)	1874
NcoI	CCATGG	1 cut(s)	2189
NdeI	CATATG	1 cut(s)	757
NdeII	GATC	9 cut(s)	148, 270, 625, 1576, 1916, 1944, 2137, 2686, 3118
NheI	GCTAGC	2 cut(s)	592, 1003
NmuCI	GTSAC	7 cut(s)	131, 1136, 1160, 1337, 1553, 1665, 2174
NsbI	TGCGCA	1 cut(s)	1443
NsiI	ATGCAT	1 cut(s)	2266
NspI	RCATGY	5 cut(s)	120, 372, 1540, 1744, 2892
NspV	TTCGAA	1 cut(s)	381
PaeI	GCATGC	2 cut(s)	120, 1540
PaeR7I	CTCGAG	2 cut(s)	332, 576
PciI	ACATGT	2 cut(s)	1740, 2888
PciSI	GCTCTTC	2 cut(s)	2002, 3177
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	5 cut(s)	839, 905, 941, 1202, 1406
PflMI	CCANNNNNTGG	1 cut(s)	2989
PfoI	TCCNGGA	1 cut(s)	2039
PleI	GAGTC	2 cut(s)	148, 1672
PpsI	GAGTC	2 cut(s)	148, 1672
Ppu21I	YACGTR	1 cut(s)	1189
PscI	ACATGT	2 cut(s)	1740, 2888
PshBI	ATTAAT	1 cut(s)	1359
Psp124BI	GAGCTC	1 cut(s)	1599
Psp1406I	AACGTT	1 cut(s)	714
Psp6I	CCWGG	7 cut(s)	670, 1132, 1333, 1606, 1622, 1699, 2039
PspEI	GGTNACC	2 cut(s)	1136, 1337
PspGI	CCWGG	7 cut(s)	670, 1132, 1333, 1606, 1622, 1699, 2039
PspOMI	GGGCCC	1 cut(s)	1626
PspXI	VCTCGAGB	2 cut(s)	332, 576
PsuI	RGATCY	1 cut(s)	2137
PvuII	CAGCTG	2 cut(s)	2515, 3178
RseI	CAYNNNNRTG	6 cut(s)	1431, 1482, 1674, 2232, 2609, 2893
SacI	GAGCTC	1 cut(s)	1599
SapI	GCTCTTC	2 cut(s)	2002, 3177
SaqAI	TTAA	6 cut(s)	429, 833, 1359, 2241, 2298, 2799
Sau3AI	GATC	9 cut(s)	148, 270, 625, 1576, 1916, 1944, 2137, 2686, 3118
ScaI	AGTACT	4 cut(s)	1810, 1912, 2659, 3091
SchI	GAGTC	2 cut(s)	148, 1673
ScrFI	CCNGG	8 cut(s)	672, 1134, 1335, 1608, 1624, 1701, 1874, 2041
SduI	GDGCHC	5 cut(s)	79, 1194, 1599, 1630, 2362
SexAI	ACCWGGT	2 cut(s)	1132, 1333
SfaNI	GCATC	5 cut(s)	523, 954, 1138, 1423, 2039
SfcI	CTRYAG	1 cut(s)	177
Sfr274I	CTCGAG	2 cut(s)	332, 576
SfuI	TTCGAA	1 cut(s)	381
SinI	GGWCC	3 cut(s)	411, 752, 2955
SlaI	CTCGAG	2 cut(s)	332, 576
SmiMI	CAYNNNNRTG	6 cut(s)	1431, 1482, 1674, 2232, 2609, 2893
SmlI	CTYRAG	6 cut(s)	332, 399, 576, 1056, 1257, 2665
SmoI	CTYRAG	6 cut(s)	332, 399, 576, 1056, 1257, 2665
SpeI	ACTAGT	2 cut(s)	1865, 3077
SphI	GCATGC	2 cut(s)	120, 1540
SsiI	CCGC	3 cut(s)	193, 525, 683
SstI	GAGCTC	1 cut(s)	1599
StyD4I	CCNGG	8 cut(s)	670, 1132, 1333, 1606, 1622, 1699, 1872, 2039
StyI	CCWWGG	1 cut(s)	2189
TaiI	ACGT	3 cut(s)	717, 1191, 2241
TaqII	GACCGA	1 cut(s)	751
TauI	GCSGC	2 cut(s)	195, 685
TfiI	GAWTC	5 cut(s)	839, 905, 941, 1202, 1406
Tru1I	TTAA	6 cut(s)	429, 833, 1359, 2241, 2298, 2799
Tru9I	TTAA	6 cut(s)	429, 833, 1359, 2241, 2298, 2799
TscAI	CASTG	7 cut(s)	136, 1204, 1495, 1720, 1831, 2131, 3052
TseFI	GTSAC	7 cut(s)	131, 1136, 1160, 1337, 1553, 1665, 2174
Tsp45I	GTSAC	7 cut(s)	131, 1136, 1160, 1337, 1553, 1665, 2174
TspGWI	ACGGA	1 cut(s)	1664
TspRI	CASTG	7 cut(s)	136, 1204, 1495, 1720, 1831, 2131, 3052
Van91I	CCANNNNNTGG	1 cut(s)	2989
VpaK11BI	GGWCC	3 cut(s)	411, 752, 2955
VspI	ATTAAT	1 cut(s)	1359
XagI	CCTNNNNNAGG	1 cut(s)	418
XapI	RAATTY	3 cut(s)	81, 979, 2713
XbaI	TCTAGA	1 cut(s)	2161
XceI	RCATGY	5 cut(s)	120, 372, 1540, 1744, 2892
XhoI	CTCGAG	2 cut(s)	332, 576
XmiI	GTMKAC	3 cut(s)	126, 583, 1474
XmnI	GAANNNNTTC	1 cut(s)	636
ZrmI	AGTACT	4 cut(s)	1810, 1912, 2659, 3091
Zsp2I	ATGCAT	1 cut(s)	2266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.