Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016297

Physical Location & Seq

Genomic Coordinates Reverse (-)

79927463 .. 79928730

Gene Structure 1268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34875

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAAAAGGAATCTGATTTGGTTGCTTTCTCTTTTGCTTTTCACAGGAATGAGAAATGGTAGAAACTCGAACTTAATGGAATCAGAGAGGCGTGAAACTTATAGGCTTTCGGATGAGGATAAATCACTATTATCAGTTGTCCATGATTCTGCAAAGATACTTCTTCATGTTGATAATGGTGATTCTGGATATAAAGAAAGTTTGATGCAGTTTGCTAAAAATTTGGGGCCAACAGCTCAAATGCTAGCAGAAAGTAAGTTGGTACAAGCTTTCAGCCAACCTCCGAATTGCCAGCCTCAAGCCACTCATCCAATACAAACCCAGAACTACATGGCTCCTGCTCCAGTCCTAGCTTTGCCAGCACCAGAGGTACCTGGTCGCCTTCTCGATGCTAACAATAGTCACATACATTGTAGTTCCCCATATTACGTGCCCAACAGTGATTCAAGTGAAAGTAAGTTGGCACAAGCTTTCAGCCAACCTCCGAATTGCCAGCCTCAAGCCAACTATCCAATACAGAGCCAAAACTACATGACTCCTGCACCAGTCCTAGCTTTGCCAGTACCAGAGGTACCTGGTCACCTTCTCGATGGTAACAATGGTCAAATACATCGTGGTTCCCCATATTACTTGCCCAACAGTGATTCAAGTGCTTCATATTTTCACTGTGATGCTTCTGCACAAGGATATGCAAGAGCCAGCAACGGTGGTATACATATCAATGACAGTGCTAACAGGAGAAACATGAGCCCTCCTAGCACATCCCAGTTAGGCATGGTTCAGAACTATCGTGACAAGGGAAAAATGGTTGTTGATCTAAATCAAAACATGGAGCTCGTAGGGACTGGTGATACAGAAGCCAGGGCCCATTCTCAAAATATTTCAGTAGTCCTGGGACTTCAAGCAGTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

304

Amino Acids

33.18

Weight (kDa)

6.35

Isoelectric Point (pI)

58.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016297)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41110
malus_domestica	MD03G1047400.v1.1 MD11G1049900.v1.1
pyrus_communis	pycom11g04050
rosa_chinensis	RchiOBHm_Chr5g0073891
rosa_laevigata	RLG00000036422
rosa_multiflora	Rmu_co8433661.1_g000001 Rmu_sc0000470.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007480
rosa_rugosa	Rorug05G0427100
rosa_samantha	Rh5AG484100 Rh5BG504800 Rh5CG528600 Rh5DG517100
rosa_wichuraiana	Rw5G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	370, 571
AccB1I	GGYRCC	2 cut(s)	370, 571
AccI	GTMKAC	1 cut(s)	712
AcsI	RAATTY	1 cut(s)	220
AfaI	GTAC	4 cut(s)	264, 372, 564, 573
AgsI	TTSAA	3 cut(s)	447, 648, 902
AjnI	CCWGG	4 cut(s)	373, 574, 860, 891
AluBI	AGCT	6 cut(s)	236, 269, 353, 470, 554, 835
AluI	AGCT	6 cut(s)	236, 269, 353, 470, 554, 835
Alw21I	GWGCWC	1 cut(s)	837
AoxI	GGCC	2 cut(s)	227, 864
ApaI	GGGCCC	1 cut(s)	868
ApoI	RAATTY	1 cut(s)	220
Asp718I	GGTACC	2 cut(s)	370, 571
AspS9I	GGNCC	3 cut(s)	227, 864, 865
AsuHPI	GGTGA	3 cut(s)	191, 572, 860
AsuNHI	GCTAGC	1 cut(s)	244
BaeGI	GKGCMC	2 cut(s)	435, 868
BanI	GGYRCC	2 cut(s)	370, 571
BanII	GRGCYC	3 cut(s)	752, 837, 868
Bbv12I	GWGCWC	1 cut(s)	837
BccI	CCATC	1 cut(s)	584
BciT130I	CCWGG	4 cut(s)	375, 576, 862, 893
BfaI	CTAG	4 cut(s)	245, 350, 551, 756
Bme1390I	CCNGG	4 cut(s)	375, 576, 862, 893
BmgT120I	GGNCC	3 cut(s)	227, 864, 865
BmiI	GGNNCC	6 cut(s)	228, 336, 372, 573, 619, 866
BmrFI	CCNGG	4 cut(s)	375, 576, 862, 893
BmrI	ACTGGG	1 cut(s)	760
BmsI	GCATC	3 cut(s)	195, 379, 661
BmtI	GCTAGC	1 cut(s)	248
BmuI	ACTGGG	1 cut(s)	760
BpmI	CTGGAG	1 cut(s)	327
BpuEI	CTTGAG	2 cut(s)	282, 483
BsaAI	YACGTR	1 cut(s)	430
BsaBI	GATNNNNATC	1 cut(s)	819
BsaJI	CCNNGG	2 cut(s)	861, 892
Bse1I	ACTGG	5 cut(s)	344, 545, 560, 766, 850
Bse8I	GATNNNNATC	1 cut(s)	819
BseBI	CCWGG	4 cut(s)	375, 576, 862, 893
BseDI	CCNNGG	2 cut(s)	861, 892
BseGI	GGATG	3 cut(s)	118, 307, 761
BseJI	GATNNNNATC	1 cut(s)	819
BseNI	ACTGG	5 cut(s)	344, 545, 560, 766, 850
BseSI	GKGCMC	2 cut(s)	435, 868
BsgI	GTGCAG	2 cut(s)	525, 663
BshFI	GGCC	2 cut(s)	229, 866
BshNI	GGYRCC	2 cut(s)	370, 571
BsiHKAI	GWGCWC	1 cut(s)	837
BslFI	GGGAC	2 cut(s)	856, 909
BsmFI	GGGAC	2 cut(s)	856, 909
BsnI	GGCC	2 cut(s)	229, 866
Bsp120I	GGGCCC	1 cut(s)	864
Bsp1286I	GDGCHC	4 cut(s)	435, 752, 837, 868
Bsp143I	GATC	1 cut(s)	814
BspANI	GGCC	2 cut(s)	229, 866
BspLI	GGNNCC	6 cut(s)	228, 336, 372, 573, 619, 866
BspOI	GCTAGC	1 cut(s)	248
BspT107I	GGYRCC	2 cut(s)	370, 571
BsrI	ACTGG	5 cut(s)	344, 545, 560, 766, 850
BssECI	CCNNGG	2 cut(s)	861, 892
BssMI	GATC	1 cut(s)	814
BssNAI	GTATAC	1 cut(s)	713
Bst1107I	GTATAC	1 cut(s)	713
Bst2UI	CCWGG	4 cut(s)	375, 576, 862, 893
Bst4CI	ACNGT	5 cut(s)	440, 641, 668, 707, 728
BstBAI	YACGTR	1 cut(s)	430
BstC8I	GCNNGC	5 cut(s)	246, 293, 360, 494, 700
BstEII	GGTNACC	1 cut(s)	578
BstF5I	GGATG	3 cut(s)	118, 307, 761
BstKTI	GATC	1 cut(s)	817
BstMBI	GATC	1 cut(s)	814
BstMWI	GCNNNNNNNGC	2 cut(s)	359, 756
BstNI	CCWGG	4 cut(s)	375, 576, 862, 893
BstPI	GGTNACC	1 cut(s)	578
BstSCI	CCNGG	4 cut(s)	373, 574, 860, 891
BstSLI	GKGCMC	2 cut(s)	435, 868
BstZ17I	GTATAC	1 cut(s)	713
BsuRI	GGCC	2 cut(s)	229, 866
BtsCI	GGATG	3 cut(s)	118, 307, 761
BtsI	GCAGTG	1 cut(s)	912
BtsIMutI	CAGTG	5 cut(s)	445, 646, 664, 733, 912
Cac8I	GCNNGC	5 cut(s)	246, 293, 360, 494, 700
Cfr13I	GGNCC	3 cut(s)	227, 864, 865
CsiI	ACCWGGT	2 cut(s)	373, 574
Csp6I	GTAC	4 cut(s)	263, 371, 563, 572
CviAII	CATG	8 cut(s)	143, 167, 331, 532, 745, 775, 829, 912
CviQI	GTAC	4 cut(s)	263, 371, 563, 572
DpnI	GATC	1 cut(s)	816
DpnII	GATC	1 cut(s)	814
Ecl136II	GAGCTC	1 cut(s)	835
Eco24I	GRGCYC	3 cut(s)	752, 837, 868
Eco53kI	GAGCTC	1 cut(s)	835
Eco91I	GGTNACC	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	835
EcoO109I	RGGNCCY	1 cut(s)	864
EcoO65I	GGTNACC	1 cut(s)	578
EcoRII	CCWGG	4 cut(s)	373, 574, 860, 891
EcoT38I	GRGCYC	3 cut(s)	752, 837, 868
FaeI	CATG	8 cut(s)	146, 170, 334, 535, 748, 778, 832, 915
FaqI	GGGAC	2 cut(s)	856, 909
FatI	CATG	8 cut(s)	142, 166, 330, 531, 744, 774, 828, 911
FblI	GTMKAC	1 cut(s)	712
FokI	GGATG	3 cut(s)	125, 294, 748
FriOI	GRGCYC	3 cut(s)	752, 837, 868
FspBI	CTAG	4 cut(s)	245, 350, 551, 756
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	229, 866
Hin1II	CATG	8 cut(s)	146, 170, 334, 535, 748, 778, 832, 915
HindIII	AAGCTT	2 cut(s)	267, 468
HinfI	GANTC	7 cut(s)	10, 80, 146, 182, 443, 535, 644
HphI	GGTGA	3 cut(s)	191, 572, 860
Hpy166II	GTNNAC	1 cut(s)	713
Hpy188I	TCNGA	6 cut(s)	15, 85, 112, 285, 486, 783
Hpy188III	TCNNGA	4 cut(s)	186, 386, 587, 791
Hpy8I	GTNNAC	1 cut(s)	713
HpyAV	CCTTC	2 cut(s)	392, 593
HpyCH4III	ACNGT	5 cut(s)	440, 641, 668, 707, 728
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	5 cut(s)	152, 208, 542, 680, 692
HpyF10VI	GCNNNNNNNGC	2 cut(s)	359, 756
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	8 cut(s)	146, 170, 334, 535, 748, 778, 832, 915
KpnI	GGTACC	2 cut(s)	374, 575
Kzo9I	GATC	1 cut(s)	814
LmnI	GCTCC	3 cut(s)	340, 346, 832
LweI	GCATC	3 cut(s)	195, 379, 661
MabI	ACCWGGT	2 cut(s)	373, 574
MaeI	CTAG	4 cut(s)	245, 350, 551, 756
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	4 cut(s)	401, 578, 593, 791
MalI	GATC	1 cut(s)	816
MboI	GATC	1 cut(s)	814
MboII	GAAGA	1 cut(s)	155
MhlI	GDGCHC	4 cut(s)	435, 752, 837, 868
MluCI	AATT	3 cut(s)	220, 286, 487
MlyI	GAGTC	1 cut(s)	529
MnlI	CCTC	9 cut(s)	81, 109, 291, 306, 361, 492, 507, 562, 762
MseI	TTAA	1 cut(s)	74
MslI	CAYNNNNRTG	3 cut(s)	47, 669, 720
MspR9I	CCNGG	4 cut(s)	375, 576, 862, 893
MvaI	CCWGG	4 cut(s)	375, 576, 862, 893
MwoI	GCNNNNNNNGC	2 cut(s)	359, 756
NdeII	GATC	1 cut(s)	814
NheI	GCTAGC	1 cut(s)	244
NlaIII	CATG	8 cut(s)	146, 170, 334, 535, 748, 778, 832, 915
NlaIV	GGNNCC	6 cut(s)	228, 336, 372, 573, 619, 866
NmuCI	GTSAC	3 cut(s)	401, 578, 791
PfeI	GAWTC	6 cut(s)	10, 80, 146, 182, 443, 644
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
Ppu21I	YACGTR	1 cut(s)	430
Psp124BI	GAGCTC	1 cut(s)	837
Psp6I	CCWGG	4 cut(s)	373, 574, 860, 891
PspEI	GGTNACC	1 cut(s)	578
PspGI	CCWGG	4 cut(s)	373, 574, 860, 891
PspN4I	GGNNCC	6 cut(s)	228, 336, 372, 573, 619, 866
PspOMI	GGGCCC	1 cut(s)	864
PspPI	GGNCC	3 cut(s)	227, 864, 865
RsaI	GTAC	4 cut(s)	264, 372, 564, 573
RsaNI	GTAC	4 cut(s)	263, 371, 563, 572
RseI	CAYNNNNRTG	3 cut(s)	47, 669, 720
SacI	GAGCTC	1 cut(s)	837
SaqAI	TTAA	1 cut(s)	74
Sau3AI	GATC	1 cut(s)	814
Sau96I	GGNCC	3 cut(s)	227, 864, 865
SchI	GAGTC	1 cut(s)	529
ScrFI	CCNGG	4 cut(s)	375, 576, 862, 893
SduI	GDGCHC	4 cut(s)	435, 752, 837, 868
SexAI	ACCWGGT	2 cut(s)	373, 574
SfaNI	GCATC	3 cut(s)	195, 379, 661
SmiMI	CAYNNNNRTG	3 cut(s)	47, 669, 720
SmlI	CTYRAG	2 cut(s)	297, 498
SmoI	CTYRAG	2 cut(s)	297, 498
Sse9I	AATT	3 cut(s)	220, 286, 487
SspI	AATATT	1 cut(s)	880
SspMI	CTAG	4 cut(s)	245, 350, 551, 756
SstI	GAGCTC	1 cut(s)	837
StyD4I	CCNGG	4 cut(s)	373, 574, 860, 891
TaaI	ACNGT	5 cut(s)	440, 641, 668, 707, 728
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	3 cut(s)	68, 387, 588
TasI	AATT	3 cut(s)	220, 286, 487
TfiI	GAWTC	6 cut(s)	10, 80, 146, 182, 443, 644
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	5 cut(s)	445, 646, 671, 733, 912
TseFI	GTSAC	3 cut(s)	401, 578, 791
Tsp45I	GTSAC	3 cut(s)	401, 578, 791
TspDTI	ATGAA	3 cut(s)	17, 155, 645
TspRI	CASTG	5 cut(s)	445, 646, 671, 733, 912
XapI	RAATTY	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	712
XspI	CTAG	4 cut(s)	245, 350, 551, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.