Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0016297

Physical Location & Seq

Genomic Coordinates Reverse (-)

82813538 .. 82817819

Gene Structure 4282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG484100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3156 bp

ATGGAAAGTGGAGGTGAGGTAAAACGAAGAAAGAGTGCCCGAATTTCAGCATTAGAGGAGGAAAAGAGGAAAAAAACATGCACCGTAGAAAGTGACAATGTTAGCGAGGATCAGACTCATGTTAGAAGAGGAACTTCTACAGGCAGAAGGGGCCGCAAGCGAAAAAGACTTGAAGATGTTGGCCTATCATCTCCACAGGATAGTGAAGACCCAAAAGATGAAGATTATTCGATCTACGAGGATGAAGCAGCATATCTGTCATATATACAGGAGGAGCCTGAAACTCGGATACTTGAGTTTATCCTTGATATACTGCAAAGGAGGGACACATGCAACTTATTCACAAAGCCTGTTGACCCTCAAGAGGTTAGTTACACTAGATTTCTAAAATCTCATTTTCAGATGTTTTGTTCCTTATTCAAAACACTGATCTATCACTTGCTTTTGAAGGTTTGGACCTATTACAGGATTATTAAAGAGCCAATGGATTTTGGAACCATAAGGACAAAACTTCAGGAAGGAAAATATACAAACTTACAACAGTTTGAGGCTCGAGCTATACAAGAGCTAGCACAGCAGCTTTTCCAATCTCTAAGAGCTGATCCAGAACAGTTTCAGTTACAATTCTTACTGACAAAAAGAGGCCCCGGTAGGAAGCCGCAAAATCAAGGCAGAGGTTCACATAGAAGCGTTCCTAGACCAGTTGGCCGACCGAGTTCCTCGCGTGGTCCATATGTTAGAAGGAAAAGTCAAGCAGGCTCATCTAATGCAAACTCTTCCGGAATGAGAAATGGTAGAAACTCGAACTTAATGGAATCAGAGAGGCGTGAAACTTATAGGCTTTCGGATGAGGATAAATCACTATTATCAGTTGTCCATGATTCTGCAAAGATACTTCTTCATGTTGATAATGGTGATTCTGGATATAAAGAAAGTTTGATGCAGTTTGCTAAAAATTTGGGGCCAACAGCTCAAATGCTAGCAGAAAGTAAGTTGGTACAAGCTTTCAGCCAACCTCCGAATTGCCAGCCTCAAGCCACTCATCCAATACAAACCCAGAACTACATGGCTCCTGCTCCAGTCCTAGCTTTGCCAGCACCAGAGGTACCTGGTCGCCTTCTCGATGCTAACAATGGTCACATACATCGTAGTTCCCCATATTACGTGCCCAACAGTGATTCAAGTGAAAGTAAGTTGGCACAAGCTTTCAGCCAACCTCCGAATTGCCAGCCTCAAGCCAACTATCCAATACAGAGCCAAAACTACATGGCTCCTGCACCAGTCCTAGCTTTGCCAGCACCAGAGGTACCTGGTCACCTTCTCGATGGTAACAATGGTCAAATACATCGTGGTTCCCCATATTACTTGCCCAACAGTGATTCAAGTGCTTCATATTTTCACGGTGATGCTTCTGCACAAGGATATGCAAGAGCCAGCAACGGTGGTATACATATCAATGACAGTGCTAACAGGAGAAACATGAACCCTCCTAGCACATCCCAGTTAGGCATGGTTCAGAACTATCGTGACAAGGGAAAAATGGTTGTTGATCTAAATCAAAACATGGAGCTCGTAGGGACTGGTGATACAGAAGCCAGGGCCCATTCTCAAAATGTAAACAGCAATGTTCGGTTGGAGTCACATATCCGTGTTGTTAGAGATTTCAGTAGTCCTGGGACTTCAAGCAGTGGCATGAAGTTCAGGGCTGTGGACATGTTGGGCAAGCCTAACCCCCTAGAAAACCAGCAGCAGTTTCAGCAAGCTCACCAGTTGCCTAGTAGTACTGGAACTTCAAACAGTGGCATACTCTCTTGGGCTGTGAATAGGTTGGCCAATACTAGTCACCAGGAAAACCAGCAGCTTCAGCCAGCTCAGTTGTCTAGTACTGGATCATCCAACCAGTCAAGTTTACTAGAGATCATGGCCGGAAGAAGTACCTATTTGAAGCCATCATCATCTTCGTTGCGCTCTTCATCTGCAATGTTATCAAGTTTGAGTGAGGCATCAACCTCCTGGAATGATTTTGGCTCACACCTGAACAACAACAATGCAGCTAAATCTGCACAGACAGGTCAGCAGCTTCAATGGAGCCAACGCAGTGCAGAACAAGATCTACAAGAAAATTGTAGCTTTCTAGAAATGCTTGGTGACGGCTGTAACCCATGGGACAAGAGTAGTAAACTTCTGAAAAACGAACAACATCTTGATGACGTTAATTATTCTCTGGGGAGTAATGCATTTATGAGAAATGAACAACAGCTTGGAGAGGTTAATTGTCAATCGGGGAACAGTACATCAATGAGAAATGAACAACTGTTTGGTGAGGGTGGTGCTCAATGGGGGAGCAATACATTTCTGAGGAAAGAACAACATCTTGCCGACAGTAACTTTCCTCTGGAAAACATTACATTTTTGAGGAAAGAACAACAGCTCAATGGGGGTAACTTTCTGTTGGGGAATGGTACATTTATGAGGAAAGAGCAACAGCTGGATGTGGAGAACTTTCACTTGGGGAATAGTAAATGTTTGAGTAAAGAGAAACAGCCTGAGAATGGCAACTTCCAAGTGGGAAATAGCACATTTATGAGGAAAGACCAACTTGATGAAGCTAATTTCCAATTTGGGAATAGTACTTTCTTGAGGACAGCACAACAGTTTGATCAGGGTACTTTTCTACTGGGGAAGAGTTCATTTATGAGCAAAGAACCACAGCTTGATCGTGGTAATGTTCAAATGGGGAATAGTACATTTATGAGCAAAGAACAACTGCTTAATGAGGGTACTTTCAGACAGGGGAACAGTACCTTTATGAGCAGAGAACAACGACTTGGTGAAGGTTCTTTTCAATTGGGGAACAGTACATGTATGTGGACAGAGCAACAGCTTGATGAGGTCAATCACCAATGGTGGAATAGTACATTTTTGAGGACCAGTACATTTTCGAGGAAAGACCACCAATATCTGGGGAGGAGTGAACAACAGCAGCCTGTGGATGAGGGAGTACTTCCTGACTGGTACAGTGCAATATGTTCTGCCAATGAAAGAGCTTCTAGTAGTAGTAGTACTCAATGGTACCAAAAGGAGCCTATTGATCAATCTTTGCTGCCCTTGCTCTTGGTGGACAATCAGCAGCCTAACTTGGCTCTTCAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

1051

Amino Acids

117.9

Weight (kDa)

6.79

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	154 - 185	5.5e-07	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016297)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41110
malus_domestica	MD03G1047400.v1.1 MD11G1049900.v1.1
pyrus_communis	pycom11g04050
rosa_chinensis	RchiOBHm_Chr5g0073891
rosa_laevigata	RLG00000036422
rosa_multiflora	Rmu_co8433661.1_g000001 Rmu_sc0000470.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007480
rosa_rugosa	Rorug05G0427100
rosa_samantha	Rh5AG484100 Rh5BG504800 Rh5CG528600 Rh5DG517100
rosa_wichuraiana	Rw5G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	1105, 1306, 3072
AccB1I	GGYRCC	3 cut(s)	1105, 1306, 3072
AccB7I	CCANNNNNTGG	1 cut(s)	2962
AccI	GTMKAC	1 cut(s)	1447
AccII	CGCG	1 cut(s)	724
AccIII	TCCGGA	1 cut(s)	779
AciI	CCGC	2 cut(s)	154, 659
AclWI	GGATC	3 cut(s)	117, 596, 1897
AcoI	YGGCCR	3 cut(s)	706, 1830, 1923
AcsI	RAATTY	2 cut(s)	42, 955
AcuI	CTGAAG	3 cut(s)	497, 1847, 3131
AfiI	CCNNNNNNNGG	4 cut(s)	364, 465, 2552, 2962
AflIII	ACRYGT	2 cut(s)	1713, 2861
AhlI	ACTAGT	1 cut(s)	1838
AjnI	CCWGG	6 cut(s)	1108, 1309, 1595, 1672, 1845, 2012
AjuI	GAANNNNNNNTTGG	8 cut(s)	2244, 2276, 2301, 2333, 2492, 2524, 2811, 2843
Alw21I	GWGCWC	2 cut(s)	1572, 2335
AlwI	GGATC	3 cut(s)	117, 596, 1897
Ama87I	CYCGRG	1 cut(s)	552
Aor13HI	TCCGGA	1 cut(s)	779
AoxI	GGCC	8 cut(s)	151, 181, 643, 706, 962, 1599, 1830, 1923
ApaI	GGGCCC	1 cut(s)	1603
ApeKI	GCWGC	9 cut(s)	248, 577, 1747, 1858, 2051, 2077, 2983, 3103, 3130
ApoI	RAATTY	2 cut(s)	42, 955
Asp700I	GAANNNNTTC	1 cut(s)	612
Asp718I	GGTACC	3 cut(s)	1105, 1306, 3072
AspLEI	GCGC	1 cut(s)	1968
AspS9I	GGNCC	8 cut(s)	151, 456, 644, 728, 962, 1599, 1600, 2928
AsuC2I	CCSGG	1 cut(s)	648
AsuNHI	GCTAGC	2 cut(s)	568, 979
AvaI	CYCGRG	1 cut(s)	552
AvaII	GGWCC	3 cut(s)	456, 728, 2928
BaeGI	GKGCMC	3 cut(s)	40, 1170, 1603
BaeI	ACNNNNGTAYC	2 cut(s)	281, 314
BalI	TGGCCA	1 cut(s)	1832
BanI	GGYRCC	3 cut(s)	1105, 1306, 3072
BanII	GRGCYC	2 cut(s)	1572, 1603
BarI	GAAGNNNNNNTAC	2 cut(s)	1774, 1806
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	1572, 2335
BbvI	GCAGC	9 cut(s)	260, 589, 1759, 1870, 2063, 2089, 2995, 3090, 3142
BccI	CCATC	2 cut(s)	1319, 1957
BceAI	ACGGC	1 cut(s)	2167
BciT130I	CCWGG	6 cut(s)	1110, 1311, 1597, 1674, 1847, 2014
BciVI	GTATCC	1 cut(s)	282
BclI	TGATCA	2 cut(s)	2659, 3091
BcnI	CCSGG	1 cut(s)	648
BcuI	ACTAGT	1 cut(s)	1838
BfmI	CTRYAG	1 cut(s)	138
BfuI	GTATCC	1 cut(s)	282
BglII	AGATCT	1 cut(s)	2110
BmcAI	AGTACT	5 cut(s)	1783, 1885, 2632, 3003, 3064
Bme1390I	CCNGG	7 cut(s)	648, 1110, 1311, 1597, 1674, 1847, 2014
Bme18I	GGWCC	3 cut(s)	456, 728, 2928
BmeT110I	CYCGRG	1 cut(s)	552
BmgT120I	GGNCC	8 cut(s)	151, 456, 644, 728, 962, 1599, 1600, 2928
BmrFI	CCNGG	7 cut(s)	648, 1110, 1311, 1597, 1674, 1847, 2014
BmrI	ACTGGG	2 cut(s)	1495, 2687
BmsI	GCATC	4 cut(s)	930, 1114, 1396, 2012
BmtI	GCTAGC	2 cut(s)	572, 983
BmuI	ACTGGG	2 cut(s)	1495, 2687
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	1062
BpuEI	CTTGAG	5 cut(s)	314, 345, 1017, 1218, 2659
BpuMI	CCSGG	1 cut(s)	648
BsaAI	YACGTR	1 cut(s)	1165
BsaBI	GATNNNNATC	1 cut(s)	1554
BsaJI	CCNNGG	4 cut(s)	646, 1596, 1673, 2162
BsaWI	WCCGGW	1 cut(s)	779
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	4 cut(s)	364, 465, 2552, 2962
Bse3DI	GCAATG	2 cut(s)	1630, 1986
Bse8I	GATNNNNATC	1 cut(s)	1554
BseAI	TCCGGA	1 cut(s)	779
BseBI	CCWGG	6 cut(s)	1110, 1311, 1597, 1674, 1847, 2014
BseDI	CCNNGG	4 cut(s)	646, 1596, 1673, 2162
BseGI	GGATG	7 cut(s)	247, 853, 1042, 1496, 1892, 2497, 2998
BseJI	GATNNNNATC	1 cut(s)	1554
BseLI	CCNNNNNNNGG	4 cut(s)	364, 465, 2552, 2962
BseMI	GCAATG	2 cut(s)	1630, 1986
BseMII	CTCAG	3 cut(s)	1886, 2348, 2538
BseRI	GAGGAG	3 cut(s)	71, 287, 2983
BseSI	GKGCMC	3 cut(s)	40, 1170, 1603
BseXI	GCAGC	9 cut(s)	260, 589, 1759, 1870, 2063, 2089, 2995, 3090, 3142
BsgI	GTGCAG	4 cut(s)	1260, 1398, 2046, 2121
Bsh1236I	CGCG	1 cut(s)	724
Bsh1285I	CGRYCG	1 cut(s)	713
BshFI	GGCC	8 cut(s)	153, 183, 645, 708, 964, 1601, 1832, 1925
BshNI	GGYRCC	3 cut(s)	1105, 1306, 3072
BsiEI	CGRYCG	1 cut(s)	713
BsiHKAI	GWGCWC	2 cut(s)	1572, 2335
BsiHKCI	CYCGRG	1 cut(s)	552
BsiSI	CCGG	3 cut(s)	648, 780, 1926
BslFI	GGGAC	4 cut(s)	338, 1591, 1690, 2180
BslI	CCNNNNNNNGG	4 cut(s)	364, 465, 2552, 2962
BsmFI	GGGAC	4 cut(s)	338, 1591, 1690, 2180
BsnI	GGCC	8 cut(s)	153, 183, 645, 708, 964, 1601, 1832, 1925
BsoBI	CYCGRG	1 cut(s)	552
Bsp120I	GGGCCC	1 cut(s)	1599
Bsp1286I	GDGCHC	5 cut(s)	40, 1170, 1572, 1603, 2335
Bsp13I	TCCGGA	1 cut(s)	779
Bsp19I	CCATGG	1 cut(s)	2162
BspACI	CCGC	2 cut(s)	154, 659
BspANI	GGCC	8 cut(s)	153, 183, 645, 708, 964, 1601, 1832, 1925
BspCNI	CTCAG	3 cut(s)	1885, 2349, 2539
BspEI	TCCGGA	1 cut(s)	779
BspFNI	CGCG	1 cut(s)	724
BspOI	GCTAGC	2 cut(s)	572, 983
BspPI	GGATC	3 cut(s)	117, 596, 1897
BspQI	GCTCTTC	2 cut(s)	1975, 3150
BspT107I	GGYRCC	3 cut(s)	1105, 1306, 3072
BsrDI	GCAATG	2 cut(s)	1630, 1986
BssECI	CCNNGG	4 cut(s)	646, 1596, 1673, 2162
BssNAI	GTATAC	1 cut(s)	1448
BssT1I	CCWWGG	1 cut(s)	2162
Bst1107I	GTATAC	1 cut(s)	1448
Bst2UI	CCWGG	6 cut(s)	1110, 1311, 1597, 1674, 1847, 2014
Bst6I	CTCTTC	5 cut(s)	121, 781, 1975, 2678, 3150
BstBAI	YACGTR	1 cut(s)	1165
BstDEI	CTNAG	4 cut(s)	593, 1872, 2357, 2547
BstDSI	CCRYGG	1 cut(s)	2162
BstEII	GGTNACC	1 cut(s)	1313
BstENI	CCTNNNNNAGG	1 cut(s)	463
BstF5I	GGATG	7 cut(s)	247, 853, 1042, 1496, 1892, 2497, 2998
BstFNI	CGCG	1 cut(s)	724
BstHHI	GCGC	1 cut(s)	1968
BstMCI	CGRYCG	1 cut(s)	713
BstMWI	GCNNNNNNNGC	8 cut(s)	150, 574, 1094, 1295, 1756, 1864, 2060, 3109
BstNI	CCWGG	6 cut(s)	1110, 1311, 1597, 1674, 1847, 2014
BstNSI	RCATGY	4 cut(s)	81, 333, 1717, 2865
BstPI	GGTNACC	1 cut(s)	1313
BstSCI	CCNGG	7 cut(s)	646, 1108, 1309, 1595, 1672, 1845, 2012
BstSFI	CTRYAG	1 cut(s)	138
BstSLI	GKGCMC	3 cut(s)	40, 1170, 1603
BstUI	CGCG	1 cut(s)	724
BstV1I	GCAGC	9 cut(s)	260, 589, 1759, 1870, 2063, 2089, 2995, 3090, 3142
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	2110
BstYI	RGATCY	1 cut(s)	2110
BstZ17I	GTATAC	1 cut(s)	1448
BsuI	GTATCC	1 cut(s)	282
BsuRI	GGCC	8 cut(s)	153, 183, 645, 708, 964, 1601, 1832, 1925
BtgI	CCRYGG	1 cut(s)	2162
BtsCI	GGATG	7 cut(s)	247, 853, 1042, 1496, 1892, 2497, 2998
BtsI	GCAGTG	2 cut(s)	1693, 2104
BtsIMutI	CAGTG	8 cut(s)	425, 1180, 1381, 1468, 1693, 1804, 2104, 3025
CfoI	GCGC	1 cut(s)	1968
Cfr13I	GGNCC	8 cut(s)	151, 456, 644, 728, 962, 1599, 1600, 2928
CsiI	ACCWGGT	2 cut(s)	1108, 1309
DdeI	CTNAG	4 cut(s)	593, 1872, 2357, 2547
EaeI	YGGCCR	3 cut(s)	706, 1830, 1923
Eam1104I	CTCTTC	5 cut(s)	121, 781, 1975, 2678, 3150
EarI	CTCTTC	5 cut(s)	121, 781, 1975, 2678, 3150
Ecl136II	GAGCTC	1 cut(s)	1570
Eco130I	CCWWGG	1 cut(s)	2162
Eco24I	GRGCYC	2 cut(s)	1572, 1603
Eco47I	GGWCC	3 cut(s)	456, 728, 2928
Eco53kI	GAGCTC	1 cut(s)	1570
Eco57I	CTGAAG	3 cut(s)	497, 1847, 3131
Eco88I	CYCGRG	1 cut(s)	552
Eco91I	GGTNACC	1 cut(s)	1313
EcoICRI	GAGCTC	1 cut(s)	1570
EcoNI	CCTNNNNNAGG	1 cut(s)	463
EcoO109I	RGGNCCY	2 cut(s)	644, 1599
EcoO65I	GGTNACC	1 cut(s)	1313
EcoRII	CCWGG	6 cut(s)	1108, 1309, 1595, 1672, 1845, 2012
EcoT14I	CCWWGG	1 cut(s)	2162
EcoT22I	ATGCAT	1 cut(s)	2239
EcoT38I	GRGCYC	2 cut(s)	1572, 1603
ErhI	CCWWGG	1 cut(s)	2162
FalI	AAGNNNNNCTT	4 cut(s)	118, 150, 2583, 2615
FaqI	GGGAC	4 cut(s)	338, 1591, 1690, 2180
FauNDI	CATATG	1 cut(s)	733
FbaI	TGATCA	2 cut(s)	2659, 3091
FblI	GTMKAC	1 cut(s)	1447
FokI	GGATG	7 cut(s)	254, 860, 1029, 1483, 1879, 2504, 3005
FriOI	GRGCYC	2 cut(s)	1572, 1603
GlaI	GCGC	1 cut(s)	1967
GsuI	CTGGAG	1 cut(s)	1062
HaeIII	GGCC	8 cut(s)	153, 183, 645, 708, 964, 1601, 1832, 1925
HapII	CCGG	3 cut(s)	648, 780, 1926
HhaI	GCGC	1 cut(s)	1968
Hin6I	GCGC	1 cut(s)	1966
HinP1I	GCGC	1 cut(s)	1966
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	2 cut(s)	1002, 1203
HinfI	GANTC	7 cut(s)	115, 815, 881, 917, 1178, 1379, 1637
HpaII	CCGG	3 cut(s)	648, 780, 1926
HpyAV	CCTTC	7 cut(s)	141, 442, 512, 735, 1127, 1328, 2828
HpyCH4IV	ACGT	2 cut(s)	1164, 2211
HpyF10VI	GCNNNNNNNGC	8 cut(s)	150, 574, 1094, 1295, 1756, 1864, 2060, 3109
HpyF3I	CTNAG	4 cut(s)	593, 1872, 2357, 2547
HpySE526I	ACGT	2 cut(s)	1164, 2211
HspAI	GCGC	1 cut(s)	1966
Kpn2I	TCCGGA	1 cut(s)	779
KpnI	GGTACC	3 cut(s)	1109, 1310, 3076
Ksp22I	TGATCA	2 cut(s)	2659, 3091
LguI	GCTCTTC	2 cut(s)	1975, 3150
LmnI	GCTCC	8 cut(s)	274, 1075, 1081, 1276, 1567, 2088, 2343, 3082
Lsp1109I	GCAGC	9 cut(s)	260, 589, 1759, 1870, 2063, 2089, 2995, 3090, 3142
LweI	GCATC	4 cut(s)	930, 1114, 1396, 2012
MabI	ACCWGGT	2 cut(s)	1108, 1309
MaeII	ACGT	2 cut(s)	1164, 2211
MfeI	CAATTG	1 cut(s)	2846
MflI	RGATCY	1 cut(s)	2110
MhlI	GDGCHC	5 cut(s)	40, 1170, 1572, 1603, 2335
MlsI	TGGCCA	1 cut(s)	1832
MluNI	TGGCCA	1 cut(s)	1832
MlyI	GAGTC	2 cut(s)	109, 1646
MmeI	TCCRAC	2 cut(s)	1614, 1920
Mox20I	TGGCCA	1 cut(s)	1832
Mph1103I	ATGCAT	1 cut(s)	2239
MroI	TCCGGA	1 cut(s)	779
MroXI	GAANNNNTTC	1 cut(s)	612
MscI	TGGCCA	1 cut(s)	1832
MseI	TTAA	5 cut(s)	474, 809, 2214, 2271, 2772
MslI	CAYNNNNRTG	6 cut(s)	1404, 1455, 1647, 2205, 2582, 2866
Msp20I	TGGCCA	1 cut(s)	1832
MspA1I	CMGCKG	2 cut(s)	2488, 3151
MspI	CCGG	3 cut(s)	648, 780, 1926
MspR9I	CCNGG	7 cut(s)	648, 1110, 1311, 1597, 1674, 1847, 2014
MunI	CAATTG	1 cut(s)	2846
MvaI	CCWGG	6 cut(s)	1110, 1311, 1597, 1674, 1847, 2014
MvnI	CGCG	1 cut(s)	724
MwoI	GCNNNNNNNGC	8 cut(s)	150, 574, 1094, 1295, 1756, 1864, 2060, 3109
NciI	CCSGG	1 cut(s)	648
NcoI	CCATGG	1 cut(s)	2162
NdeI	CATATG	1 cut(s)	733
NheI	GCTAGC	2 cut(s)	568, 979
NmuCI	GTSAC	7 cut(s)	92, 1136, 1313, 1526, 1638, 1841, 2147
NsiI	ATGCAT	1 cut(s)	2239
NspI	RCATGY	4 cut(s)	81, 333, 1717, 2865
PaeR7I	CTCGAG	1 cut(s)	552
PciI	ACATGT	2 cut(s)	1713, 2861
PciSI	GCTCTTC	2 cut(s)	1975, 3150
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	5 cut(s)	815, 881, 917, 1178, 1379
PflMI	CCANNNNNTGG	1 cut(s)	2962
PfoI	TCCNGGA	1 cut(s)	2012
PleI	GAGTC	2 cut(s)	109, 1645
PpsI	GAGTC	2 cut(s)	109, 1645
Ppu21I	YACGTR	1 cut(s)	1165
PscI	ACATGT	2 cut(s)	1713, 2861
Psp124BI	GAGCTC	1 cut(s)	1572
Psp6I	CCWGG	6 cut(s)	1108, 1309, 1595, 1672, 1845, 2012
PspEI	GGTNACC	1 cut(s)	1313
PspGI	CCWGG	6 cut(s)	1108, 1309, 1595, 1672, 1845, 2012
PspOMI	GGGCCC	1 cut(s)	1599
PspPI	GGNCC	8 cut(s)	151, 456, 644, 728, 962, 1599, 1600, 2928
PspXI	VCTCGAGB	1 cut(s)	552
PsrI	GAACNNNNNNTAC	2 cut(s)	2097, 2129
PsuI	RGATCY	1 cut(s)	2110
PvuII	CAGCTG	2 cut(s)	2488, 3151
RseI	CAYNNNNRTG	6 cut(s)	1404, 1455, 1647, 2205, 2582, 2866
SacI	GAGCTC	1 cut(s)	1572
SapI	GCTCTTC	2 cut(s)	1975, 3150
SaqAI	TTAA	5 cut(s)	474, 809, 2214, 2271, 2772
Sau96I	GGNCC	8 cut(s)	151, 456, 644, 728, 962, 1599, 1600, 2928
ScaI	AGTACT	5 cut(s)	1783, 1885, 2632, 3003, 3064
SchI	GAGTC	2 cut(s)	109, 1646
ScrFI	CCNGG	7 cut(s)	648, 1110, 1311, 1597, 1674, 1847, 2014
SduI	GDGCHC	5 cut(s)	40, 1170, 1572, 1603, 2335
SexAI	ACCWGGT	2 cut(s)	1108, 1309
SfaNI	GCATC	4 cut(s)	930, 1114, 1396, 2012
SfcI	CTRYAG	1 cut(s)	138
Sfr274I	CTCGAG	1 cut(s)	552
SinI	GGWCC	3 cut(s)	456, 728, 2928
SlaI	CTCGAG	1 cut(s)	552
SmiMI	CAYNNNNRTG	6 cut(s)	1404, 1455, 1647, 2205, 2582, 2866
SmlI	CTYRAG	6 cut(s)	293, 360, 552, 1032, 1233, 2638
SmoI	CTYRAG	6 cut(s)	293, 360, 552, 1032, 1233, 2638
SpeI	ACTAGT	1 cut(s)	1838
SsiI	CCGC	2 cut(s)	154, 659
SstI	GAGCTC	1 cut(s)	1572
StyD4I	CCNGG	7 cut(s)	646, 1108, 1309, 1595, 1672, 1845, 2012
StyI	CCWWGG	1 cut(s)	2162
TaiI	ACGT	2 cut(s)	1167, 2214
TaqI	TCGA	6 cut(s)	230, 553, 803, 1122, 1323, 2942
TaqII	GACCGA	1 cut(s)	727
TauI	GCSGC	2 cut(s)	156, 661
TfiI	GAWTC	5 cut(s)	815, 881, 917, 1178, 1379
Tru1I	TTAA	5 cut(s)	474, 809, 2214, 2271, 2772
Tru9I	TTAA	5 cut(s)	474, 809, 2214, 2271, 2772
TscAI	CASTG	8 cut(s)	432, 1180, 1381, 1468, 1693, 1804, 2104, 3025
TseFI	GTSAC	7 cut(s)	92, 1136, 1313, 1526, 1638, 1841, 2147
TseI	GCWGC	9 cut(s)	248, 577, 1747, 1858, 2051, 2077, 2983, 3103, 3130
Tsp45I	GTSAC	7 cut(s)	92, 1136, 1313, 1526, 1638, 1841, 2147
TspGWI	ACGGA	1 cut(s)	1637
TspRI	CASTG	8 cut(s)	432, 1180, 1381, 1468, 1693, 1804, 2104, 3025
Van91I	CCANNNNNTGG	1 cut(s)	2962
VpaK11BI	GGWCC	3 cut(s)	456, 728, 2928
XagI	CCTNNNNNAGG	1 cut(s)	463
XapI	RAATTY	2 cut(s)	42, 955
XbaI	TCTAGA	1 cut(s)	2134
XceI	RCATGY	4 cut(s)	81, 333, 1717, 2865
XhoI	CTCGAG	1 cut(s)	552
XmiI	GTMKAC	1 cut(s)	1447
XmnI	GAANNNNTTC	1 cut(s)	612
ZrmI	AGTACT	5 cut(s)	1783, 1885, 2632, 3003, 3064
Zsp2I	ATGCAT	1 cut(s)	2239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.