Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8433661.1

Orthogroup ID

OG0016297

Physical Location & Seq

Genomic Coordinates Forward (+)

18 .. 1519

Gene Structure 1502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8433661.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1502 bp

atggctcctgcaccagtcctagctttgccagcaccagaggtacctggtcaccttctcgatggtaacaatggtcaattacatcgtggttccccatattacttgcccaacagtgattcaagtgcttcatattttcacggtgatgcttctgcacaaggatatgcaagagccagcaacggtggtatacatatcaatgacagtgctaacaggagaaacatgaaccctcctagcacatcccagttaggcatggttcagaactatcgtgacaagggaaaaatggttgttgatctaaatcaaaacatggagctcgtagggactggtgatacagaagccagggcccattctcaaaatgtaaacagcaatgttcggttggagtcacatatccgtgttgttagagatttcagtagtcctgggacttcaagcagtggcatgaagttcagggctgtggacatgttgggcaagcctaaccccctagaaaaccagcagcagtttcagcaagctcatcagttgcctagtagtactgggacttcaaacagtggcatactctcttgggctgtgaataggttggccaatactagtcaccaggaaaaccagcagcttcagccagcacagttgtctagtactggatcatccaaccagtcaagtttactagagatcatggccggaagaagtacctatttgaagccatcatcatcttcgttgcgctcttcatctgcaatgttatcaagtttgagtgaggcatcaacctcctggaatgattttggctcacacctgaacaacaacaatgcagctaaatctgcacagacaggtcagcagcttcaatggagccaacgcagtgcagaacaagatctgcaagaaaattgtagctttctagacatgcttggtgacggctgtaacccatgggacaagagtagtacacttctgaaaaacgaacaacatcttgatgacgttaattattctttggggagtaatgcatttatgagaaatgaacaacagcttggagaggttaattgtcaatcggggaacagtacatcaatgagaaatgaacaactgcttggtgagggtggtgctcaatgggggagcaatacatttctgaggaaagaacaacatcttgccgacagtaactttcctctggaaaacaatacatttttgaggaaagaacaacagctcaatgggggtaactttctgttggggaatggtacatttatgaggaaagagcaacagctggatgtggagaactttcacttggggaatagtacatgtttgagtaaagagaaacagcctgagaatggcaacttccaagtgggaaatagcacatttatgaggaaagaccaacttgatgaagctaatttccaatttgggaatagtactttcttgaggacagcacaacagtttgatcagggtacttttctactggggaagaattcatttatgagcaaagaaccacagcttgatcgtggtaatgttcaaatggggaatagtacatttatgagcaaagaacaact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

501

Amino Acids

55.03

Weight (kDa)

5.86

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016297)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41110
malus_domestica	MD03G1047400.v1.1 MD11G1049900.v1.1
pyrus_communis	pycom11g04050
rosa_chinensis	RchiOBHm_Chr5g0073891
rosa_laevigata	RLG00000036422
rosa_multiflora	Rmu_co8433661.1_g000001 Rmu_sc0000470.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007480
rosa_rugosa	Rorug05G0427100
rosa_samantha	Rh5AG484100 Rh5BG504800 Rh5CG528600 Rh5DG517100
rosa_wichuraiana	Rw5G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	40
AccB1I	GGYRCC	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	181
AclWI	GGATC	1 cut(s)	631
AcoI	YGGCCR	2 cut(s)	564, 657
AcsI	RAATTY	1 cut(s)	1420
AcuI	CTGAAG	1 cut(s)	581
AfiI	CCNNNNNNNGG	1 cut(s)	1286
AflIII	ACRYGT	2 cut(s)	447, 1256
AgsI	TTSAA	6 cut(s)	117, 417, 528, 679, 818, 1466
AhlI	ACTAGT	1 cut(s)	572
AjnI	CCWGG	5 cut(s)	43, 329, 406, 579, 746
AjuI	GAANNNNNNNTTGG	6 cut(s)	978, 1010, 1035, 1067, 1226, 1258
Alw21I	GWGCWC	2 cut(s)	306, 1069
AlwI	GGATC	1 cut(s)	631
AoxI	GGCC	3 cut(s)	333, 564, 657
ApaI	GGGCCC	1 cut(s)	337
ApeKI	GCWGC	4 cut(s)	481, 592, 785, 811
ApoI	RAATTY	1 cut(s)	1420
Asp718I	GGTACC	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	702
AspS9I	GGNCC	2 cut(s)	333, 334
AsuHPI	GGTGA	6 cut(s)	41, 149, 329, 569, 893, 1067
BaeGI	GKGCMC	1 cut(s)	337
BalI	TGGCCA	1 cut(s)	566
BanI	GGYRCC	1 cut(s)	40
BanII	GRGCYC	2 cut(s)	306, 337
BarI	GAAGNNNNNNTAC	2 cut(s)	508, 540
Bbv12I	GWGCWC	2 cut(s)	306, 1069
BbvI	GCAGC	4 cut(s)	493, 604, 797, 823
BccI	CCATC	2 cut(s)	53, 691
BceAI	ACGGC	1 cut(s)	901
BciT130I	CCWGG	5 cut(s)	45, 331, 408, 581, 748
BclI	TGATCA	1 cut(s)	1393
BcuI	ACTAGT	1 cut(s)	572
BfaI	CTAG	8 cut(s)	20, 225, 470, 510, 573, 615, 647, 869
BglII	AGATCT	1 cut(s)	844
BisI	GCNGC	4 cut(s)	482, 593, 786, 812
BlsI	GCNGC	4 cut(s)	483, 594, 787, 813
BmcAI	AGTACT	3 cut(s)	517, 619, 1366
Bme1390I	CCNGG	5 cut(s)	45, 331, 408, 581, 748
BmgT120I	GGNCC	2 cut(s)	333, 334
BmiI	GGNNCC	5 cut(s)	6, 42, 88, 335, 824
BmrFI	CCNGG	5 cut(s)	45, 331, 408, 581, 748
BmrI	ACTGGG	3 cut(s)	229, 528, 1421
BmsI	GCATC	2 cut(s)	130, 746
BmuI	ACTGGG	3 cut(s)	229, 528, 1421
BpuEI	CTTGAG	1 cut(s)	1393
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	3 cut(s)	330, 407, 896
Bsc4I	CCNNNNNNNGG	1 cut(s)	1286
Bse1I	ACTGG	7 cut(s)	14, 235, 319, 523, 625, 634, 1416
Bse3DI	GCAATG	2 cut(s)	364, 720
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	5 cut(s)	45, 331, 408, 581, 748
BseDI	CCNNGG	3 cut(s)	330, 407, 896
BseGI	GGATG	3 cut(s)	230, 626, 1231
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	1286
BseMI	GCAATG	2 cut(s)	364, 720
BseMII	CTCAG	2 cut(s)	1082, 1272
BseNI	ACTGG	7 cut(s)	14, 235, 319, 523, 625, 634, 1416
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	4 cut(s)	493, 604, 797, 823
BsgI	GTGCAG	3 cut(s)	132, 780, 855
BshFI	GGCC	3 cut(s)	335, 566, 659
BshNI	GGYRCC	1 cut(s)	40
BsiHKAI	GWGCWC	2 cut(s)	306, 1069
BsiSI	CCGG	1 cut(s)	660
BslFI	GGGAC	4 cut(s)	325, 424, 535, 914
BslI	CCNNNNNNNGG	1 cut(s)	1286
BsmFI	GGGAC	4 cut(s)	325, 424, 535, 914
BsnI	GGCC	3 cut(s)	335, 566, 659
Bsp120I	GGGCCC	1 cut(s)	333
Bsp1286I	GDGCHC	3 cut(s)	306, 337, 1069
Bsp143I	GATC	6 cut(s)	283, 623, 651, 844, 1393, 1450
Bsp19I	CCATGG	1 cut(s)	896
BspANI	GGCC	3 cut(s)	335, 566, 659
BspCNI	CTCAG	2 cut(s)	1083, 1273
BspLI	GGNNCC	5 cut(s)	6, 42, 88, 335, 824
BspPI	GGATC	1 cut(s)	631
BspQI	GCTCTTC	1 cut(s)	709
BspT107I	GGYRCC	1 cut(s)	40
BsrDI	GCAATG	2 cut(s)	364, 720
BsrI	ACTGG	7 cut(s)	14, 235, 319, 523, 625, 634, 1416
BssECI	CCNNGG	3 cut(s)	330, 407, 896
BssMI	GATC	6 cut(s)	283, 623, 651, 844, 1393, 1450
BssNAI	GTATAC	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	896
Bst1107I	GTATAC	1 cut(s)	182
Bst2UI	CCWGG	5 cut(s)	45, 331, 408, 581, 748
Bst4CI	ACNGT	9 cut(s)	110, 137, 176, 197, 533, 609, 1025, 1118, 1389
Bst6I	CTCTTC	1 cut(s)	709
BstC8I	GCNNGC	5 cut(s)	30, 169, 458, 495, 603
BstDEI	CTNAG	2 cut(s)	1091, 1281
BstDSI	CCRYGG	1 cut(s)	896
BstEII	GGTNACC	1 cut(s)	47
BstF5I	GGATG	3 cut(s)	230, 626, 1231
BstHHI	GCGC	1 cut(s)	702
BstKTI	GATC	6 cut(s)	286, 626, 654, 847, 1396, 1453
BstMBI	GATC	6 cut(s)	283, 623, 651, 844, 1393, 1450
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 490, 598, 794
BstNI	CCWGG	5 cut(s)	45, 331, 408, 581, 748
BstNSI	RCATGY	3 cut(s)	451, 877, 1260
BstPI	GGTNACC	1 cut(s)	47
BstSCI	CCNGG	5 cut(s)	43, 329, 406, 579, 746
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	4 cut(s)	493, 604, 797, 823
BstX2I	RGATCY	1 cut(s)	844
BstYI	RGATCY	1 cut(s)	844
BstZ17I	GTATAC	1 cut(s)	182
BsuRI	GGCC	3 cut(s)	335, 566, 659
BtgI	CCRYGG	1 cut(s)	896
BtsCI	GGATG	3 cut(s)	230, 626, 1231
BtsI	GCAGTG	2 cut(s)	427, 838
BtsIMutI	CAGTG	5 cut(s)	115, 202, 427, 538, 838
Cac8I	GCNNGC	5 cut(s)	30, 169, 458, 495, 603
CfoI	GCGC	1 cut(s)	702
Cfr13I	GGNCC	2 cut(s)	333, 334
CsiI	ACCWGGT	1 cut(s)	43
CviAII	CATG	9 cut(s)	214, 244, 298, 427, 448, 655, 874, 897, 1257
DdeI	CTNAG	2 cut(s)	1091, 1281
DpnI	GATC	6 cut(s)	285, 625, 653, 846, 1395, 1452
DpnII	GATC	6 cut(s)	283, 623, 651, 844, 1393, 1450
EaeI	YGGCCR	2 cut(s)	564, 657
Eam1104I	CTCTTC	1 cut(s)	709
EarI	CTCTTC	1 cut(s)	709
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	896
Eco24I	GRGCYC	2 cut(s)	306, 337
Eco53kI	GAGCTC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	581
Eco91I	GGTNACC	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	333
EcoO65I	GGTNACC	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	1420
EcoRII	CCWGG	5 cut(s)	43, 329, 406, 579, 746
EcoT14I	CCWWGG	1 cut(s)	896
EcoT22I	ATGCAT	1 cut(s)	973
EcoT38I	GRGCYC	2 cut(s)	306, 337
ErhI	CCWWGG	1 cut(s)	896
FaeI	CATG	9 cut(s)	217, 247, 301, 430, 451, 658, 877, 900, 1260
FalI	AAGNNNNNCTT	2 cut(s)	1317, 1349
FaqI	GGGAC	4 cut(s)	325, 424, 535, 914
FatI	CATG	9 cut(s)	213, 243, 297, 426, 447, 654, 873, 896, 1256
FbaI	TGATCA	1 cut(s)	1393
FblI	GTMKAC	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	482, 593, 786, 812
FokI	GGATG	3 cut(s)	217, 613, 1238
FriOI	GRGCYC	2 cut(s)	306, 337
Fsp4HI	GCNGC	4 cut(s)	482, 593, 786, 812
FspBI	CTAG	8 cut(s)	20, 225, 470, 510, 573, 615, 647, 869
GlaI	GCGC	1 cut(s)	701
GluI	GCNGC	4 cut(s)	482, 593, 786, 812
HaeIII	GGCC	3 cut(s)	335, 566, 659
HapII	CCGG	1 cut(s)	660
HhaI	GCGC	1 cut(s)	702
Hin1II	CATG	9 cut(s)	217, 247, 301, 430, 451, 658, 877, 900, 1260
Hin6I	GCGC	1 cut(s)	700
HinP1I	GCGC	1 cut(s)	700
HinfI	GANTC	2 cut(s)	113, 371
HpaII	CCGG	1 cut(s)	660
HphI	GGTGA	6 cut(s)	41, 149, 329, 569, 893, 1067
Hpy166II	GTNNAC	5 cut(s)	182, 352, 445, 644, 914
Hpy188I	TCNGA	3 cut(s)	252, 921, 1092
Hpy188III	TCNNGA	6 cut(s)	56, 260, 869, 938, 1130, 1372
Hpy8I	GTNNAC	5 cut(s)	182, 352, 445, 644, 914
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	9 cut(s)	110, 137, 176, 197, 533, 609, 1025, 1118, 1389
HpyCH4IV	ACGT	1 cut(s)	945
HpyCH4V	TGCA	9 cut(s)	11, 149, 161, 713, 785, 797, 836, 850, 971
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 490, 598, 794
HpyF3I	CTNAG	2 cut(s)	1091, 1281
HpySE526I	ACGT	1 cut(s)	945
Hsp92II	CATG	9 cut(s)	217, 247, 301, 430, 451, 658, 877, 900, 1260
HspAI	GCGC	1 cut(s)	700
KpnI	GGTACC	1 cut(s)	44
Ksp22I	TGATCA	1 cut(s)	1393
Kzo9I	GATC	6 cut(s)	283, 623, 651, 844, 1393, 1450
LguI	GCTCTTC	1 cut(s)	709
LmnI	GCTCC	4 cut(s)	10, 301, 822, 1077
Lsp1109I	GCAGC	4 cut(s)	493, 604, 797, 823
LweI	GCATC	2 cut(s)	130, 746
MabI	ACCWGGT	1 cut(s)	43
MaeI	CTAG	8 cut(s)	20, 225, 470, 510, 573, 615, 647, 869
MaeII	ACGT	1 cut(s)	945
MaeIII	GTNAC	9 cut(s)	47, 62, 260, 372, 575, 881, 890, 1118, 1175
MalI	GATC	6 cut(s)	285, 625, 653, 846, 1395, 1452
MboI	GATC	6 cut(s)	283, 623, 651, 844, 1393, 1450
MboII	GAAGA	4 cut(s)	675, 684, 696, 1429
MflI	RGATCY	1 cut(s)	844
MhlI	GDGCHC	3 cut(s)	306, 337, 1069
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	7 cut(s)	74, 856, 949, 1006, 1345, 1352, 1420
MluNI	TGGCCA	1 cut(s)	566
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	2 cut(s)	348, 654
Mox20I	TGGCCA	1 cut(s)	566
Mph1103I	ATGCAT	1 cut(s)	973
MscI	TGGCCA	1 cut(s)	566
MseI	TTAA	2 cut(s)	948, 1005
MslI	CAYNNNNRTG	5 cut(s)	138, 189, 381, 939, 1316
Msp20I	TGGCCA	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	1222
MspI	CCGG	1 cut(s)	660
MspR9I	CCNGG	5 cut(s)	45, 331, 408, 581, 748
MvaI	CCWGG	5 cut(s)	45, 331, 408, 581, 748
MwoI	GCNNNNNNNGC	4 cut(s)	29, 490, 598, 794
NcoI	CCATGG	1 cut(s)	896
NdeII	GATC	6 cut(s)	283, 623, 651, 844, 1393, 1450
NlaIII	CATG	9 cut(s)	217, 247, 301, 430, 451, 658, 877, 900, 1260
NlaIV	GGNNCC	5 cut(s)	6, 42, 88, 335, 824
NmuCI	GTSAC	5 cut(s)	47, 260, 372, 575, 881
NsiI	ATGCAT	1 cut(s)	973
NspI	RCATGY	3 cut(s)	451, 877, 1260
PciI	ACATGT	2 cut(s)	447, 1256
PciSI	GCTCTTC	1 cut(s)	709
PfeI	GAWTC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	746
PkrI	GCNGC	4 cut(s)	483, 594, 787, 813
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PscI	ACATGT	2 cut(s)	447, 1256
Psp124BI	GAGCTC	1 cut(s)	306
Psp6I	CCWGG	5 cut(s)	43, 329, 406, 579, 746
PspEI	GGTNACC	1 cut(s)	47
PspGI	CCWGG	5 cut(s)	43, 329, 406, 579, 746
PspN4I	GGNNCC	5 cut(s)	6, 42, 88, 335, 824
PspOMI	GGGCCC	1 cut(s)	333
PspPI	GGNCC	2 cut(s)	333, 334
PsuI	RGATCY	1 cut(s)	844
PvuII	CAGCTG	1 cut(s)	1222
RseI	CAYNNNNRTG	5 cut(s)	138, 189, 381, 939, 1316
SacI	GAGCTC	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	709
SaqAI	TTAA	2 cut(s)	948, 1005
SatI	GCNGC	4 cut(s)	482, 593, 786, 812
Sau3AI	GATC	6 cut(s)	283, 623, 651, 844, 1393, 1450
Sau96I	GGNCC	2 cut(s)	333, 334
ScaI	AGTACT	3 cut(s)	517, 619, 1366
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	5 cut(s)	45, 331, 408, 581, 748
SduI	GDGCHC	3 cut(s)	306, 337, 1069
SexAI	ACCWGGT	1 cut(s)	43
SfaNI	GCATC	2 cut(s)	130, 746
SmiMI	CAYNNNNRTG	5 cut(s)	138, 189, 381, 939, 1316
SmlI	CTYRAG	1 cut(s)	1372
SmoI	CTYRAG	1 cut(s)	1372
SpeI	ACTAGT	1 cut(s)	572
Sse9I	AATT	7 cut(s)	74, 856, 949, 1006, 1345, 1352, 1420
SspMI	CTAG	8 cut(s)	20, 225, 470, 510, 573, 615, 647, 869
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	5 cut(s)	43, 329, 406, 579, 746
StyI	CCWWGG	1 cut(s)	896
TaaI	ACNGT	9 cut(s)	110, 137, 176, 197, 533, 609, 1025, 1118, 1389
TaiI	ACGT	1 cut(s)	948
TaqI	TCGA	1 cut(s)	57
TasI	AATT	7 cut(s)	74, 856, 949, 1006, 1345, 1352, 1420
TatI	WGTACW	7 cut(s)	515, 617, 911, 1025, 1253, 1364, 1478
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	948, 1005
Tru9I	TTAA	2 cut(s)	948, 1005
TscAI	CASTG	5 cut(s)	115, 202, 427, 538, 838
TseFI	GTSAC	5 cut(s)	47, 260, 372, 575, 881
TseI	GCWGC	4 cut(s)	481, 592, 785, 811
Tsp45I	GTSAC	5 cut(s)	47, 260, 372, 575, 881
TspDTI	ATGAA	8 cut(s)	114, 230, 443, 696, 999, 1056, 1353, 1413
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	5 cut(s)	115, 202, 427, 538, 838
XapI	RAATTY	1 cut(s)	1420
XbaI	TCTAGA	1 cut(s)	868
XceI	RCATGY	3 cut(s)	451, 877, 1260
XmiI	GTMKAC	1 cut(s)	181
XspI	CTAG	8 cut(s)	20, 225, 470, 510, 573, 615, 647, 869
ZrmI	AGTACT	3 cut(s)	517, 619, 1366
Zsp2I	ATGCAT	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.