Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007740

Physical Location & Seq

Genomic Coordinates Forward (+)

3231452 .. 3237801

Gene Structure 6350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1046700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2790 bp

ATGAGCAGCAGATCCAGAAACTTCCGCCGCCGCGCTGACGACGGCGACGATCAAAACGACGACGCAAATGACACCACAACCGCAGTTAAATCCTCATCAAAACCCTCTTCCGCCTCCTCGTCAAAGCCCAAGAAGCCACAGAACCAAGCCCCGAAGCTTCTCAGCTTCGTTGACGACGAAGAAAACGCAGCCGCCCCCTCCCGCTCCGCCTCTTCTTCCAAACGCGATAAGCCCTCATCCCGTCTCGGCAAGCCCTCTTCAGCTCATAAGTTGACGGCTCTCAAAGACCGTCTCGCTCATTCGTCTTCCGCGTCGACTTCCGTGCCGTCCAACGTTCAGCCACAAGCAGGTACCTACACGAAAGAAGCGCTCCGTGAGCTGCAGAAGAACACGCGAACCCTAGCCAGCTCCCGACCTTCCTCCGAGCCCACCATTGTTCTGAAGGGCCTTGTCAAACCCACCGACTCAATCTCCGATACGCTGAGAGAAGCCCGGGAGTTGGACTCCGATTCCGACGAGAAGCATGAGAAAGAAAGGGGTAGTTTGTTTAATAGGGAAAAAGACGATGCGGAGGCCCGATTGGCCTCGATGGGAATTGACAAGGGCAAGAGCTCACCTGGTTTGTTTCCTGATCAAGCCACCATAGATGCAATTCGGGCAAAGAGGGAACGGCTGAGGAAATCGAGGGCAGCAGCCCCGGATTTTATCTCATTGGATTCAGGGAGTAATCATGGCGCTGCGGAAGGATTGAGTGATGAGGAACCAGAGTTTCGAGGCAGAATTGCAGTGTTTGGGGATAAGATGGACGGTTCTAAAAAGGGGGTCTTTGAGGATGTTGATGATAGGGCAGTGGATGTTGGATTGAGGCAGGAAAGTGTCGAAGATGGTGATGAAGAGGATGAGGAAGAGAAGATTTGGGAAGAAGAGCAGTTTAGGAAAGGGTTGGGGAAGAGGGTGGATGACGGGGCGGTCGGTACTAGTGCTCCTGCGGTTCCTAGTGTGCCCCAGCCAAAGGCTACCTACTCTGCAGTGACGGGTTATAGTTTGGCACAGAGTGTGCCTGTTGGGCCAAGTATAGGAGGGGCAATTGGAGCATCACAAGGTTCGAATGTGATGTCCATAAAGGCGCAGGCGGACATTGCTAGGAAAGCTTTGGAAGAAAATTTCATGAAGCTTAAGGCAAGTCATGGCACAACCATGTTGTCACTAACTAAGACTGACGAAAATTTGTCTGCCTCGCTGTTGAATATTACTGCTCTCGAGAAGTCTCTGTCTGCTGCTGATGAGAAGTACCAGTTCATGCAAAAGCTTCGTGATTTTGTCTCTTCCATATGTGACTTTTTGCAGGTTAAAGCTCCCTATATAGAAGAGCTTGAAGCAGAAATGCAGAAAGTTCATGAACAACGTGCGTCATCTACTTTGGAGAGGAGAAGTGCTGATGATGATGAAATGATGGAAGTAGAAGCAGCTGTAAAAGCAGCAATGTCTATCTTCAGTAAAGAAGGTAGCAGTGCTGAAGTAATTGCAGCTGCTAAAAGTGCAGCACAAGCTGCATCTGCTGCTTTGAGAGAACAAACAAATCTACCAGTGAAGTTAGACGAATTTGGTAGAGATATGAACCTTAAGAAACGTATGGATATGAAAGGGAGGTCTGAGGCTCGACAACGCAGGAAAGTACGGTACGACTCTAAGAGACTGTCATCCATGGATGTGGACAGTTCCCATCGAACAATAGAAGGAGAATCAAGCACTGATGAGAGTGACAACGAGAGTCAAGTATACCATAAACACCGCCAGTTGGTGCTCGACACTGCAGGTAAAGTATTCAATGATGCAGCAGAAGAATATTCTCAACTTTCAGTGGTCAAAGAAAGGTTTGAAGACTGGAAGAGAGAGTATGCATCAAGCTACCGTGATGCTTATATGTCTTTAAGTGTTCCTACTATTTTCTCTCCATATGTGAGGCTGGAGCTTTTGAAGTGGGACCCCCTCCGTGATAAAACAGATTTTCTAAACATGAACTGGCATTCATTGTTAATGGACTATGGTTTACTGGAGGATGGAGATGATTTGGCATCAGATGATGCTGATGCTAACCTTGTCCCTGATCTGGTGGAAAAGGTTGCTTTACCCATTTTGCATCACCAAGTTGTTCACTGTTGGAACATTCTCAGTATGCGAGAGACAGAGAATGTAGTTGCTGCCACAAGTTTGGTAACAGATTACGTTCCACCTTCTAGTGAGGCTCTTGCAGATTTATTAGGTGCCATTCGCACCCGTCTGGCTGATGCTGTTACTAATATTACGGTCCCAACATGGAGCCCGCTTGTATTGACAGCAGTGCCAGATGTGGCACGGCTGGCAGCATATCGATTCGGTATGTCTGTTCGTTTGATGAAAAATATCTGCTTGTGGAAGGAAATCCTTGCTTCTCCCATTCTAGAGAAGCTTGCCATTGAGGAGCTGTTGTGTGGTAAAGTTCTACCTCATGTTCGAAGCATTGCTGCAAATGTGCATGATGCTGTTACAAGAACTGAAAGGATTGTTGCTTCTCTATCTGGGGTGTGGGCAGGTTCAAATGTCACAGGGGACCGCAGCCGTAAGTTGCAATCGCTGGTGGATTATGTGCTCTCGTTGGGTAGGACTCTGGAGAAGAAGCATTCGCTTGGTGTGACACAAAGTGAAACTGGTGGACTTGCTCGTAGATTAAAGAAAATGCTGGTTGATCTGAACCAGTATGACAAGGCTAGGGACATAGCAAGGACATTCAATCTTAAGGAGGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000375 GO:0000377 GO:0000398 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0022402 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045182 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCFC NTR2

Protein Analysis

930

Amino Acids

102.17

Weight (kDa)

5.74

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTR2	PF15458	118 - 340	2.3e-10	Nineteen complex-related protein 2
GCFC	PF07842	620 - 823	8.4e-32	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08550
fragaria_vesca	FvH4_4g28100 FvH4_4g28100 FvH4_4g28100 FvH4_4g28100 FvH4_4g28100
malus_domestica	MD13G1046700.v1.1 MD16G1048400.v1.1
prunus_persica	Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1
pyrus_communis	pycom13g04090 pycom16g04230
rosa_chinensis	RchiOBHm_Chr4g0435851
rosa_laevigata	RLG00000006554
rosa_multiflora	Rmu_sc0002642.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377030
rosa_rugosa	Rorug04G0290000
rosa_samantha	Rh4AG344300 Rh4BG353200 Rh4CG367600 Rh4DG347100
rosa_wichuraiana	Rw4G030080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	968
Acc36I	ACCTGC	4 cut(s)	338, 1336, 1805, 2561
Acc65I	GGTACC	1 cut(s)	350
AccB1I	GGYRCC	2 cut(s)	350, 2264
AccBSI	CCGCTC	1 cut(s)	204
AccI	GTMKAC	2 cut(s)	314, 1779
AccII	CGCG	4 cut(s)	33, 225, 311, 394
AclI	AACGTT	1 cut(s)	333
AclWI	GGATC	1 cut(s)	6
AcsI	RAATTY	3 cut(s)	1162, 1225, 1601
AcuI	CTGAAG	4 cut(s)	243, 461, 1477, 1536
AdeI	CACNNNGTG	2 cut(s)	1055, 2681
AfaI	GTAC	5 cut(s)	352, 976, 1292, 1677, 1682
AfeI	AGCGCT	1 cut(s)	369
AfiI	CCNNNNNNNGG	6 cut(s)	347, 499, 1012, 1076, 1798, 2110
AflII	CTTAAG	3 cut(s)	1175, 1622, 2774
AgsI	TTSAA	7 cut(s)	1246, 1376, 1828, 1880, 1978, 2577, 2770
AhlI	ACTAGT	1 cut(s)	977
AjnI	CCWGG	1 cut(s)	616
Alw21I	GWGCWC	4 cut(s)	614, 985, 1806, 2631
Alw26I	GTCTC	6 cut(s)	248, 296, 1272, 1327, 1687, 2177
AlwI	GGATC	1 cut(s)	6
Ama87I	CYCGRG	2 cut(s)	492, 1259
Aor51HI	AGCGCT	1 cut(s)	369
AoxI	GGCC	4 cut(s)	445, 573, 582, 1067
ApoI	RAATTY	3 cut(s)	1162, 1225, 1601
ArsI	GACNNNNNNTTYG	2 cut(s)	1100, 1132
Asp718I	GGTACC	1 cut(s)	350
AspLEI	GCGC	4 cut(s)	35, 370, 737, 1129
AspS9I	GGNCC	6 cut(s)	445, 574, 1067, 1984, 2308, 2590
AsuC2I	CCSGG	3 cut(s)	493, 494, 698
AsuHPI	GGTGA	3 cut(s)	606, 899, 2135
AsuII	TTCGAA	2 cut(s)	1106, 2494
AvaI	CYCGRG	2 cut(s)	492, 1259
AvaII	GGWCC	3 cut(s)	1984, 2308, 2590
BaeGI	GKGCMC	1 cut(s)	1005
BanI	GGYRCC	2 cut(s)	350, 2264
BanII	GRGCYC	3 cut(s)	429, 614, 2324
BbsI	GAAGAC	2 cut(s)	297, 1887
Bbv12I	GWGCWC	4 cut(s)	614, 985, 1806, 2631
BbvCI	CCTCAGC	1 cut(s)	674
BccI	CCATC	6 cut(s)	583, 796, 878, 1447, 1731, 2054
BceAI	ACGGC	6 cut(s)	58, 291, 310, 686, 2372, 2583
BcgI	CGANNNNNNTGC	4 cut(s)	304, 338, 1292, 1326
BciT130I	CCWGG	1 cut(s)	618
BclI	TGATCA	1 cut(s)	631
BcnI	CCSGG	3 cut(s)	493, 494, 698
BcoDI	GTCTC	6 cut(s)	248, 296, 1272, 1327, 1687, 2177
BcuI	ACTAGT	1 cut(s)	977
BfaI	CTAG	7 cut(s)	401, 978, 996, 1143, 2238, 2441, 2748
BfmI	CTRYAG	3 cut(s)	380, 1026, 1812
BfoI	RGCGCY	2 cut(s)	371, 738
BfrI	CTTAAG	3 cut(s)	1175, 1622, 2774
BfuAI	ACCTGC	4 cut(s)	338, 1336, 1805, 2561
BglI	GCCNNNNNGGC	2 cut(s)	581, 1066
Bme1390I	CCNGG	4 cut(s)	493, 494, 618, 698
Bme18I	GGWCC	3 cut(s)	1984, 2308, 2590
BmeT110I	CYCGRG	2 cut(s)	492, 1259
BmgT120I	GGNCC	6 cut(s)	445, 574, 1067, 1984, 2308, 2590
BmiI	GGNNCC	9 cut(s)	352, 762, 993, 1985, 1986, 2266, 2310, 2321, 2591
BmrFI	CCNGG	4 cut(s)	493, 494, 618, 698
BpiI	GAAGAC	2 cut(s)	297, 1887
BplI	GAGNNNNNCTC	2 cut(s)	488, 520
BpmI	CTGGAG	3 cut(s)	1988, 2075, 2669
Bpu10I	CCTNAGC	1 cut(s)	674
Bpu14I	TTCGAA	2 cut(s)	1106, 2494
BpuMI	CCSGG	3 cut(s)	493, 494, 698
Bsa29I	ATCGAT	1 cut(s)	2371
BsaJI	CCNNGG	3 cut(s)	492, 696, 1704
BsaXI	ACNNNNNCTCC	7 cut(s)	455, 485, 967, 997, 2453, 2483, 2771
Bsc4I	CCNNNNNNNGG	6 cut(s)	347, 499, 1012, 1076, 1798, 2110
Bse1I	ACTGG	8 cut(s)	1294, 1586, 1795, 1889, 2027, 2058, 2692, 2734
Bse3DI	GCAATG	3 cut(s)	1137, 1488, 2499
BseBI	CCWGG	1 cut(s)	618
BseCI	ATCGAT	1 cut(s)	2371
BseDI	CCNNGG	3 cut(s)	492, 696, 1704
BseGI	GGATG	8 cut(s)	236, 838, 859, 904, 964, 1700, 1714, 2065
BseLI	CCNNNNNNNGG	6 cut(s)	347, 499, 1012, 1076, 1798, 2110
BseMI	GCAATG	3 cut(s)	1137, 1488, 2499
BseMII	CTCAG	5 cut(s)	175, 473, 665, 1644, 2185
BseNI	ACTGG	8 cut(s)	1294, 1586, 1795, 1889, 2027, 2058, 2692, 2734
BseRI	GAGGAG	3 cut(s)	106, 1441, 2474
BseSI	GKGCMC	1 cut(s)	1005
BseYI	CCCAGC	1 cut(s)	1005
BsgI	GTGCAG	1 cut(s)	1560
Bsh1236I	CGCG	4 cut(s)	33, 225, 311, 394
Bsh1285I	CGRYCG	1 cut(s)	972
BshFI	GGCC	4 cut(s)	447, 575, 584, 1069
BshNI	GGYRCC	2 cut(s)	350, 2264
BshVI	ATCGAT	1 cut(s)	2371
BsiEI	CGRYCG	1 cut(s)	972
BsiHKAI	GWGCWC	4 cut(s)	614, 985, 1806, 2631
BsiHKCI	CYCGRG	2 cut(s)	492, 1259
BsiSI	CCGG	2 cut(s)	493, 698
BslFI	GGGAC	5 cut(s)	1997, 2087, 2294, 2603, 2765
BslI	CCNNNNNNNGG	6 cut(s)	347, 499, 1012, 1076, 1798, 2110
BsmAI	GTCTC	6 cut(s)	248, 296, 1272, 1327, 1687, 2177
BsmBI	CGTCTC	2 cut(s)	248, 296
BsmFI	GGGAC	5 cut(s)	1997, 2087, 2294, 2603, 2765
BsmI	GAATGC	2 cut(s)	2026, 2659
BsnI	GGCC	4 cut(s)	447, 575, 584, 1069
BsoBI	CYCGRG	2 cut(s)	492, 1259
Bsp119I	TTCGAA	2 cut(s)	1106, 2494
Bsp1286I	GDGCHC	7 cut(s)	429, 614, 985, 1005, 1806, 2324, 2631
Bsp143I	GATC	5 cut(s)	11, 49, 631, 2107, 2725
Bsp19I	CCATGG	1 cut(s)	1704
BspANI	GGCC	4 cut(s)	447, 575, 584, 1069
BspCNI	CTCAG	5 cut(s)	174, 474, 666, 1645, 2184
BspDI	ATCGAT	1 cut(s)	2371
BspFNI	CGCG	4 cut(s)	33, 225, 311, 394
BspHI	TCATGA	2 cut(s)	1167, 1396
BspLI	GGNNCC	9 cut(s)	352, 762, 993, 1985, 1986, 2266, 2310, 2321, 2591
BspMAI	CTGCAG	3 cut(s)	384, 1030, 1816
BspMI	ACCTGC	4 cut(s)	338, 1336, 1805, 2561
BspPI	GGATC	1 cut(s)	6
BspQI	GCTCTTC	2 cut(s)	918, 1362
BspT104I	TTCGAA	2 cut(s)	1106, 2494
BspT107I	GGYRCC	2 cut(s)	350, 2264
BspTI	CTTAAG	3 cut(s)	1175, 1622, 2774
BsrBI	CCGCTC	1 cut(s)	204
BsrDI	GCAATG	3 cut(s)	1137, 1488, 2499
BsrI	ACTGG	8 cut(s)	1294, 1586, 1795, 1889, 2027, 2058, 2692, 2734
BssECI	CCNNGG	3 cut(s)	492, 696, 1704
BssMI	GATC	5 cut(s)	11, 49, 631, 2107, 2725
BssNAI	GTATAC	1 cut(s)	1780
BssT1I	CCWWGG	1 cut(s)	1704
Bst1107I	GTATAC	1 cut(s)	1780
Bst2UI	CCWGG	1 cut(s)	618
Bst4CI	ACNGT	8 cut(s)	290, 809, 1680, 1698, 1718, 1913, 2159, 2308
BstAFI	CTTAAG	3 cut(s)	1175, 1622, 2774
BstAPI	GCANNNNNTGC	2 cut(s)	1550, 1559
BstBI	TTCGAA	2 cut(s)	1106, 2494
BstC8I	GCNNGC	6 cut(s)	251, 406, 1131, 2324, 2361, 2451
BstDEI	CTNAG	7 cut(s)	161, 482, 674, 1212, 1653, 1689, 2171
BstDSI	CCRYGG	1 cut(s)	1704
BstF5I	GGATG	8 cut(s)	236, 838, 859, 904, 964, 1700, 1714, 2065
BstFNI	CGCG	4 cut(s)	33, 225, 311, 394
BstH2I	RGCGCY	2 cut(s)	371, 738
BstHHI	GCGC	4 cut(s)	35, 370, 737, 1129
BstKTI	GATC	5 cut(s)	14, 52, 634, 2110, 2728
BstMAI	GTCTC	6 cut(s)	248, 296, 1272, 1327, 1687, 2177
BstMBI	GATC	5 cut(s)	11, 49, 631, 2107, 2725
BstMCI	CGRYCG	1 cut(s)	972
BstNI	CCWGG	1 cut(s)	618
BstSCI	CCNGG	4 cut(s)	491, 492, 616, 696
BstSFI	CTRYAG	3 cut(s)	380, 1026, 1812
BstSLI	GKGCMC	1 cut(s)	1005
BstUI	CGCG	4 cut(s)	33, 225, 311, 394
BstV2I	GAAGAC	2 cut(s)	297, 1887
BstX2I	RGATCY	1 cut(s)	11
BstXI	CCANNNNNNTGG	2 cut(s)	1711, 2212
BstYI	RGATCY	1 cut(s)	11
BstZ17I	GTATAC	1 cut(s)	1780
Bsu15I	ATCGAT	1 cut(s)	2371
BsuRI	GGCC	4 cut(s)	447, 575, 584, 1069
BsuTUI	ATCGAT	1 cut(s)	2371
BtgI	CCRYGG	1 cut(s)	1704
BtsCI	GGATG	8 cut(s)	236, 838, 859, 904, 964, 1700, 1714, 2065
BtsI	GCAGTG	6 cut(s)	792, 855, 1035, 1516, 1809, 2346
BveI	ACCTGC	4 cut(s)	338, 1336, 1805, 2561
Cac8I	GCNNGC	6 cut(s)	251, 406, 1131, 2324, 2361, 2451
CciI	TCATGA	2 cut(s)	1167, 1396
CfoI	GCGC	4 cut(s)	35, 370, 737, 1129
Cfr13I	GGNCC	6 cut(s)	445, 574, 1067, 1984, 2308, 2590
Cfr9I	CCCGGG	1 cut(s)	492
ClaI	ATCGAT	1 cut(s)	2371
CseI	GACGC	3 cut(s)	71, 300, 1398
CsiI	ACCWGGT	1 cut(s)	616
Csp6I	GTAC	5 cut(s)	351, 975, 1291, 1676, 1681
CviQI	GTAC	5 cut(s)	351, 975, 1291, 1676, 1681
DdeI	CTNAG	7 cut(s)	161, 482, 674, 1212, 1653, 1689, 2171
DpnI	GATC	5 cut(s)	13, 51, 633, 2109, 2727
DpnII	GATC	5 cut(s)	11, 49, 631, 2107, 2725
DraIII	CACNNNGTG	2 cut(s)	1055, 2681
DrdI	GACNNNNNNGTC	1 cut(s)	968
DseDI	GACNNNNNNGTC	1 cut(s)	968
EciI	GGCGGA	4 cut(s)	14, 100, 196, 1148
Ecl136II	GAGCTC	1 cut(s)	612
Eco130I	CCWWGG	1 cut(s)	1704
Eco24I	GRGCYC	3 cut(s)	429, 614, 2324
Eco47I	GGWCC	3 cut(s)	1984, 2308, 2590
Eco47III	AGCGCT	1 cut(s)	369
Eco53kI	GAGCTC	1 cut(s)	612
Eco57I	CTGAAG	4 cut(s)	243, 461, 1477, 1536
Eco88I	CYCGRG	2 cut(s)	492, 1259
EcoICRI	GAGCTC	1 cut(s)	612
EcoO109I	RGGNCCY	2 cut(s)	445, 1984
EcoRII	CCWGG	1 cut(s)	616
EcoT14I	CCWWGG	1 cut(s)	1704
EcoT22I	ATGCAT	1 cut(s)	1903
EcoT38I	GRGCYC	3 cut(s)	429, 614, 2324
ErhI	CCWWGG	1 cut(s)	1704
Esp3I	CGTCTC	2 cut(s)	248, 296
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	5 cut(s)	1997, 2087, 2294, 2603, 2765
FauI	CCCGC	2 cut(s)	209, 2331
FauNDI	CATATG	2 cut(s)	1331, 1957
FbaI	TGATCA	1 cut(s)	631
FblI	GTMKAC	2 cut(s)	314, 1779
FokI	GGATG	8 cut(s)	223, 845, 866, 911, 971, 1687, 1721, 2072
FriOI	GRGCYC	3 cut(s)	429, 614, 2324
FspBI	CTAG	7 cut(s)	401, 978, 996, 1143, 2238, 2441, 2748
GlaI	GCGC	4 cut(s)	34, 369, 736, 1128
GsaI	CCCAGC	1 cut(s)	1009
GsuI	CTGGAG	3 cut(s)	1988, 2075, 2669
HaeII	RGCGCY	2 cut(s)	371, 738
HaeIII	GGCC	4 cut(s)	447, 575, 584, 1069
HapII	CCGG	2 cut(s)	493, 698
HgaI	GACGC	3 cut(s)	71, 300, 1398
HhaI	GCGC	4 cut(s)	35, 370, 737, 1129
Hin6I	GCGC	4 cut(s)	33, 368, 735, 1127
HinP1I	GCGC	4 cut(s)	33, 368, 735, 1127
HincII	GTYRAC	3 cut(s)	172, 273, 315
HindII	GTYRAC	3 cut(s)	172, 273, 315
HindIII	AAGCTT	5 cut(s)	155, 1149, 1172, 1307, 2447
HinfI	GANTC	9 cut(s)	464, 503, 509, 716, 1685, 1742, 1771, 2373, 2644
HpaII	CCGG	2 cut(s)	493, 698
HphI	GGTGA	3 cut(s)	606, 899, 2135
Hpy166II	GTNNAC	8 cut(s)	172, 273, 315, 1714, 1780, 2051, 2155, 2693
Hpy188I	TCNGA	8 cut(s)	424, 441, 475, 508, 514, 1654, 2080, 2730
Hpy8I	GTNNAC	8 cut(s)	172, 273, 315, 1714, 1780, 2051, 2155, 2693
Hpy99I	CGWCG	7 cut(s)	44, 50, 62, 65, 179, 316, 518
HpyAV	CCTTC	7 cut(s)	426, 436, 737, 1496, 1730, 2244, 2410
HpyCH4III	ACNGT	8 cut(s)	290, 809, 1680, 1698, 1718, 1913, 2159, 2308
HpyCH4IV	ACGT	4 cut(s)	333, 1405, 1630, 2226
HpyF3I	CTNAG	7 cut(s)	161, 482, 674, 1212, 1653, 1689, 2171
HpySE526I	ACGT	4 cut(s)	333, 1405, 1630, 2226
HspAI	GCGC	4 cut(s)	33, 368, 735, 1127
KflI	GGGWCCC	1 cut(s)	1984
KpnI	GGTACC	1 cut(s)	354
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	5 cut(s)	11, 49, 631, 2107, 2725
LguI	GCTCTTC	2 cut(s)	918, 1362
LmnI	GCTCC	9 cut(s)	209, 375, 413, 988, 1091, 1360, 1969, 2319, 2461
MabI	ACCWGGT	1 cut(s)	616
MaeI	CTAG	7 cut(s)	401, 978, 996, 1143, 2238, 2441, 2748
MaeII	ACGT	4 cut(s)	333, 1405, 1630, 2226
MaeIII	GTNAC	9 cut(s)	1030, 1203, 1334, 1760, 2215, 2293, 2524, 2581, 2671
MalI	GATC	5 cut(s)	13, 51, 633, 2109, 2727
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	5 cut(s)	11, 49, 631, 2107, 2725
MfeI	CAATTG	1 cut(s)	1086
MflI	RGATCY	1 cut(s)	11
MhlI	GDGCHC	7 cut(s)	429, 614, 985, 1005, 1806, 2324, 2631
MluCI	AATT	8 cut(s)	594, 651, 780, 1086, 1162, 1225, 1521, 1601
MlyI	GAGTC	5 cut(s)	458, 497, 1679, 1780, 2638
MmeI	TCCRAC	5 cut(s)	354, 480, 537, 838, 2141
Mph1103I	ATGCAT	1 cut(s)	1903
MseI	TTAA	9 cut(s)	87, 549, 1176, 1350, 1623, 1931, 2036, 2708, 2775
MslI	CAYNNNNRTG	2 cut(s)	1196, 1709
MspA1I	CMGCKG	2 cut(s)	1469, 1529
MspCI	CTTAAG	3 cut(s)	1175, 1622, 2774
MspI	CCGG	2 cut(s)	493, 698
MspR9I	CCNGG	4 cut(s)	493, 494, 618, 698
MunI	CAATTG	1 cut(s)	1086
Mva1269I	GAATGC	2 cut(s)	2026, 2659
MvaI	CCWGG	1 cut(s)	618
MvnI	CGCG	4 cut(s)	33, 225, 311, 394
NciI	CCSGG	3 cut(s)	493, 494, 698
NcoI	CCATGG	1 cut(s)	1704
NdeI	CATATG	2 cut(s)	1331, 1957
NdeII	GATC	5 cut(s)	11, 49, 631, 2107, 2725
NlaIV	GGNNCC	9 cut(s)	352, 762, 993, 1985, 1986, 2266, 2310, 2321, 2591
NmeAIII	GCCGAG	1 cut(s)	225
NmuCI	GTSAC	6 cut(s)	1030, 1203, 1334, 1760, 2581, 2671
NsiI	ATGCAT	1 cut(s)	1903
NspV	TTCGAA	2 cut(s)	1106, 2494
PaeR7I	CTCGAG	1 cut(s)	1259
PagI	TCATGA	2 cut(s)	1167, 1396
PciSI	GCTCTTC	2 cut(s)	918, 1362
PcsI	WCGNNNNNNNCGW	4 cut(s)	45, 54, 174, 308
PctI	GAATGC	2 cut(s)	2026, 2659
PfeI	GAWTC	4 cut(s)	509, 716, 1742, 2373
PleI	GAGTC	5 cut(s)	458, 497, 1679, 1779, 2638
PpsI	GAGTC	5 cut(s)	458, 497, 1679, 1779, 2638
PpuMI	RGGWCCY	1 cut(s)	1984
Psp124BI	GAGCTC	1 cut(s)	614
Psp1406I	AACGTT	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	1984
Psp6I	CCWGG	1 cut(s)	616
PspFI	CCCAGC	1 cut(s)	1005
PspGI	CCWGG	1 cut(s)	616
PspN4I	GGNNCC	9 cut(s)	352, 762, 993, 1985, 1986, 2266, 2310, 2321, 2591
PspPI	GGNCC	6 cut(s)	445, 574, 1067, 1984, 2308, 2590
PspPPI	RGGWCCY	1 cut(s)	1984
PstI	CTGCAG	3 cut(s)	384, 1030, 1816
PsuI	RGATCY	1 cut(s)	11
PvuII	CAGCTG	2 cut(s)	1469, 1529
RsaI	GTAC	5 cut(s)	352, 976, 1292, 1677, 1682
RsaNI	GTAC	5 cut(s)	351, 975, 1291, 1676, 1681
RseI	CAYNNNNRTG	2 cut(s)	1196, 1709
SacI	GAGCTC	1 cut(s)	614
SalI	GTCGAC	1 cut(s)	313
SapI	GCTCTTC	2 cut(s)	918, 1362
SaqAI	TTAA	9 cut(s)	87, 549, 1176, 1350, 1623, 1931, 2036, 2708, 2775
Sau3AI	GATC	5 cut(s)	11, 49, 631, 2107, 2725
Sau96I	GGNCC	6 cut(s)	445, 574, 1067, 1984, 2308, 2590
SchI	GAGTC	5 cut(s)	458, 497, 1679, 1780, 2638
ScrFI	CCNGG	4 cut(s)	493, 494, 618, 698
SduI	GDGCHC	7 cut(s)	429, 614, 985, 1005, 1806, 2324, 2631
SexAI	ACCWGGT	1 cut(s)	616
SfcI	CTRYAG	3 cut(s)	380, 1026, 1812
SfiI	GGCCNNNNNGGCC	1 cut(s)	581
Sfr274I	CTCGAG	1 cut(s)	1259
SfuI	TTCGAA	2 cut(s)	1106, 2494
SinI	GGWCC	3 cut(s)	1984, 2308, 2590
SlaI	CTCGAG	1 cut(s)	1259
SmaI	CCCGGG	1 cut(s)	494
SmiMI	CAYNNNNRTG	2 cut(s)	1196, 1709
SmlI	CTYRAG	4 cut(s)	1175, 1259, 1622, 2774
SmoI	CTYRAG	4 cut(s)	1175, 1259, 1622, 2774
SpeI	ACTAGT	1 cut(s)	977
Sse9I	AATT	8 cut(s)	594, 651, 780, 1086, 1162, 1225, 1521, 1601
SspI	AATATT	3 cut(s)	1249, 1847, 2302
SspMI	CTAG	7 cut(s)	401, 978, 996, 1143, 2238, 2441, 2748
SstI	GAGCTC	1 cut(s)	614
StyD4I	CCNGG	4 cut(s)	491, 492, 616, 696
StyI	CCWWGG	1 cut(s)	1704
TaaI	ACNGT	8 cut(s)	290, 809, 1680, 1698, 1718, 1913, 2159, 2308
TaiI	ACGT	4 cut(s)	336, 1408, 1633, 2229
TasI	AATT	8 cut(s)	594, 651, 780, 1086, 1162, 1225, 1521, 1601
TauI	GCSGC	3 cut(s)	30, 33, 194
TfiI	GAWTC	4 cut(s)	509, 716, 1742, 2373
Tru1I	TTAA	9 cut(s)	87, 549, 1176, 1350, 1623, 1931, 2036, 2708, 2775
Tru9I	TTAA	9 cut(s)	87, 549, 1176, 1350, 1623, 1931, 2036, 2708, 2775
TseFI	GTSAC	6 cut(s)	1030, 1203, 1334, 1760, 2581, 2671
Tsp45I	GTSAC	6 cut(s)	1030, 1203, 1334, 1760, 2581, 2671
TspGWI	ACGGA	3 cut(s)	310, 362, 1982
TspMI	CCCGGG	1 cut(s)	492
Vha464I	CTTAAG	3 cut(s)	1175, 1622, 2774
VpaK11BI	GGWCC	3 cut(s)	1984, 2308, 2590
XapI	RAATTY	3 cut(s)	1162, 1225, 1601
XbaI	TCTAGA	1 cut(s)	2440
XhoI	CTCGAG	1 cut(s)	1259
XmaI	CCCGGG	1 cut(s)	492
XmiI	GTMKAC	2 cut(s)	314, 1779
XspI	CTAG	7 cut(s)	401, 978, 996, 1143, 2238, 2441, 2748
Zsp2I	ATGCAT	1 cut(s)	1903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.