Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007740

Physical Location & Seq

Genomic Coordinates Reverse (-)

46438220 .. 46447511

Gene Structure 9292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0290000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGCCCGCCGCCGGTGCCGGAGGGTTTCGCCCTTCCCACCCCGACCCTCCGCCGCTCTCCGGTCAGAAACGAGGCCATCCTTTCTCTGCCCGTGGTGGCTCTCCAGATCGTTTTGATAGAGGAGGGTTTGCCAAGCTTTTCGTTGGATCAGTTCCGAGGACAGCCACTGAGGGAGAGATTCGCCCTTTGTTTGAAGAACATGGAGAAGTGGTAGAGGTTGCGCTGATCAAAGACAAGAAAACAGGACTGCAGCAAGGTTGTTGTTTTATTAAATATGCAACCTCAGAAGAAGCTGATAGGGCCATTAGAGCTTTGCATAATCAACATACTCTTCCTGGGGGAGTAGGTCCTATCCAAGTCAGATATGCTGATGGGGAACGAGAACGCCTTGGTGCAGTTGAGTACAAACTGTTTGTGGGCTCACTGAACAAACAAGCTACGGAAAAGGAAGTTGAGGAAATTTTTTCACCATATGGTCTAGTTGAAGATGTTTACCTCATGCGTGATGAATTGAAGCAGAGTCGTGGATGTGGATTCGTTAAGTATTCCCGCCGAGATATGGCGTTGTCAGCAATAAATGGTCTAAACGGGCGCTACACTATGAGAGGTTGTGAGCAACCACTAACTGTCCGGTTTGCTGATCCTAAAAGGCCTAGGCCTGGAGAATCAAGGGGTCCTTCTTTTGGAGGTCCAGGTTTTGGTCCTCGGTTTCAAAGCCCAGGGGCCAGACCAGTACCTAACTTTGGTGATCCTACGAGTGATCAAATTCCAACCAATGCTTGGCATCCAATTAGTCCACCAAACTTGGTGCCATCCCCCAATCCTGGTATTCGTGGCTTCGGGGCCCATTTGCTTCCTAGGTCTGGAGACATGGGACCCTTTAATTCGGGCGGCCATGGCAGCTCTGTAGAGGGTCCTCATCCTGTGATGGCAGTTTCATCTCAAACAACACAGCAGAATCTTAACCAGTCGATGCCACATATGGGCCAGCAAATTTCCCCATTACAGAAGCATAATCAGTCACCTCAGCATTTGCCGCCTTCCCTTCATCAGCACCCTCAAACTCCAGCACCCTACGCACTCACACAAACAGCACGGCAGGTTGGTCAACCACAGCTTCCTCCTTCTGCTGGCCAAACACCATTTAATCAAGCTTTACCATCACAAAGGTTACATGGGTTGGGCGGACAGCTGTCGGCCTCTCAGCCTGAGGTCCAGCAGAATGCATCATCTGCTCCTGCATTACCAACCCTTTTGAATATCAACTTAAAATCCCATTCGATGTCCGCAACAAATCAACAGCAACGTCCTTCTGCTCCTGTTCAACAACAACTTCAAACGCTTCAGCAGTCTCCTTCTCAGTTAGCTCAGATGCTGTCGCAACAGACACAAACTTTGCGGGCAAGCTTTCAATCGTCTCAGCAGGCGTTCTCGCAGCTGCAACAACAGGTGCAGCAAATGCAACCATCAAATCAGGGTCTGTCGCTGCATCAGACTTCCCAGTCCAATAAACAGCAGCAGTCTCAATGGAATGGAATAGTACCACAGACAGTTGCAAATACCCCTGCTACAACACCAGCTGCAGATGTGCTTTCAGCCACATCTGTTGCTCCTGCTATACCTGTAACAAACCAGACTATAACTCCTGCAAAATGTATTTGGACAGAGCACACCTCCCCGGATGGATACAAGTACTATTATAATAGTGCAACTGGTGAAAGCAGGTGGGAAAAACCTGCCGAACTTGCATTGTTTGAGCAACAGCAGCACCACCAAAAGACATCAGTTCAGCAGCCTCAGACCCCTTCACTACCTCAAAATGTATCTGCGCAGCAGCAAGCTTCTCAAACACAACAGATGCATCTTCAATCTCATCTTCATCCACAGCCTCGGCCCAATCTTCAGTCTCAACAGCCATCTTTGTCTTCAACGTACCAGGCTTCTGGAATTGTAGGCCAACAAAATGCTCAGGACTTCGGATTTTCAAAGTTACCCCCAACAACCAGCTCAGTTAGTGATCCTCGCTTCCAACAGGGGCTTCATTCTGCTCAGGAATGGATGTGGAAGAACAAGCCAACAGGTTCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000375 GO:0000377 GO:0000398 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0022402 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045182 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCFC NTR2

Protein Analysis

696

Amino Acids

75.7

Weight (kDa)

9.36

Isoelectric Point (pI)

63.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	46 - 108	3.5e-15	RNA recognition motif
RRM_1	PF00076	137 - 204	6.2e-17	RNA recognition motif
WW	PF00397	554 - 579	1.5e-09	WW domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08550
fragaria_vesca	FvH4_4g28100 FvH4_4g28100 FvH4_4g28100 FvH4_4g28100 FvH4_4g28100
malus_domestica	MD13G1046700.v1.1 MD16G1048400.v1.1
prunus_persica	Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1
pyrus_communis	pycom13g04090 pycom16g04230
rosa_chinensis	RchiOBHm_Chr4g0435851
rosa_laevigata	RLG00000006554
rosa_multiflora	Rmu_sc0002642.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377030
rosa_rugosa	Rorug04G0290000
rosa_samantha	Rh4AG344300 Rh4BG353200 Rh4CG367600 Rh4DG347100
rosa_wichuraiana	Rw4G030080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1701
AarI	CACCTGC	1 cut(s)	1713
AasI	GACNNNNNNGTC	1 cut(s)	1501
Acc16I	TGCGCA	1 cut(s)	1830
Acc36I	ACCTGC	3 cut(s)	1090, 1713, 1744
AccB1I	GGYRCC	2 cut(s)	14, 808
AccB7I	CCANNNNNTGG	2 cut(s)	698, 780
AccBSI	CCGCTC	1 cut(s)	55
AclWI	GGATC	4 cut(s)	154, 635, 743, 2012
AcoI	YGGCCR	2 cut(s)	892, 1132
AcsI	RAATTY	3 cut(s)	459, 765, 993
AcuI	CTGAAG	2 cut(s)	1328, 1886
AfaI	GTAC	5 cut(s)	404, 735, 1542, 1694, 1934
AjnI	CCWGG	6 cut(s)	334, 658, 691, 718, 823, 1935
AjuI	GAANNNNNNNTTGG	2 cut(s)	2022, 2054
Alw21I	GWGCWC	1 cut(s)	1671
Alw26I	GTCTC	5 cut(s)	861, 1356, 1422, 1527, 1911
AlwI	GGATC	4 cut(s)	154, 635, 743, 2012
AlwNI	CAGNNNCTG	3 cut(s)	167, 1375, 1480
ApaI	GGGCCC	1 cut(s)	847
ApoI	RAATTY	3 cut(s)	459, 765, 993
ArsI	GACNNNNNNTTYG	2 cut(s)	1378, 1410
AspA2I	CCTAGG	2 cut(s)	653, 857
AspLEI	GCGC	3 cut(s)	223, 594, 1831
AsuC2I	CCSGG	1 cut(s)	1679
AsuHPI	GGTGA	4 cut(s)	459, 758, 1014, 1727
AvaII	GGWCC	7 cut(s)	347, 674, 689, 701, 875, 914, 1213
AvrII	CCTAGG	2 cut(s)	653, 857
AxyI	CCTNAGG	1 cut(s)	1209
BaeGI	GKGCMC	1 cut(s)	847
BalI	TGGCCA	1 cut(s)	1134
BanI	GGYRCC	2 cut(s)	14, 808
BanII	GRGCYC	2 cut(s)	422, 847
BbsI	GAAGAC	1 cut(s)	1917
Bbv12I	GWGCWC	1 cut(s)	1671
BbvCI	CCTCAGC	1 cut(s)	1026
BccI	CCATC	8 cut(s)	84, 365, 820, 922, 1168, 1474, 1676, 1924
BceAI	ACGGC	1 cut(s)	1112
BciT130I	CCWGG	6 cut(s)	336, 660, 693, 720, 825, 1937
BciVI	GTATCC	1 cut(s)	1679
BclI	TGATCA	2 cut(s)	225, 760
BcnI	CCSGG	1 cut(s)	1679
BcoDI	GTCTC	5 cut(s)	861, 1356, 1422, 1527, 1911
BfaI	CTAG	3 cut(s)	479, 654, 858
BfmI	CTRYAG	3 cut(s)	248, 906, 1581
BfoI	RGCGCY	1 cut(s)	595
BfuAI	ACCTGC	3 cut(s)	1090, 1713, 1744
BfuI	GTATCC	1 cut(s)	1679
BlnI	CCTAGG	2 cut(s)	653, 857
BmcAI	AGTACT	1 cut(s)	1694
Bme1390I	CCNGG	7 cut(s)	336, 660, 693, 720, 825, 1679, 1937
Bme18I	GGWCC	7 cut(s)	347, 674, 689, 701, 875, 914, 1213
BmiI	GGNNCC	9 cut(s)	16, 675, 724, 810, 844, 845, 876, 877, 915
BmrFI	CCNGG	7 cut(s)	336, 660, 693, 720, 825, 1679, 1937
BmrI	ACTGGG	1 cut(s)	1495
BmsI	GCATC	7 cut(s)	793, 963, 1235, 1362, 1498, 1848, 1870
BmuI	ACTGGG	1 cut(s)	1495
BoxI	GACNNNNGTC	1 cut(s)	1192
BpiI	GAAGAC	1 cut(s)	1917
BplI	GAGNNNNNCTC	2 cut(s)	1658, 1690
BpmI	CTGGAG	4 cut(s)	87, 681, 885, 1050
Bpu10I	CCTNAGC	3 cut(s)	1026, 1968, 2049
BpuMI	CCSGG	1 cut(s)	1679
BsaWI	WCCGGW	2 cut(s)	59, 630
BsaXI	ACNNNNNCTCC	4 cut(s)	195, 225, 1627, 1657
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	4 cut(s)	731, 967, 1501, 1717
Bse21I	CCTNAGG	1 cut(s)	1209
BseBI	CCWGG	6 cut(s)	336, 660, 693, 720, 825, 1937
BseGI	GGATG	8 cut(s)	76, 533, 784, 812, 919, 1687, 1879, 2064
BseNI	ACTGG	4 cut(s)	731, 967, 1501, 1717
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	847
BsgI	GTGCAG	2 cut(s)	414, 1472
BshNI	GGYRCC	2 cut(s)	14, 808
BsiHKAI	GWGCWC	1 cut(s)	1671
BsiSI	CCGG	5 cut(s)	12, 18, 60, 631, 1679
BslFI	GGGAC	1 cut(s)	888
BsmAI	GTCTC	5 cut(s)	861, 1356, 1422, 1527, 1911
BsmBI	CGTCTC	1 cut(s)	1422
BsmFI	GGGAC	1 cut(s)	888
BsmI	GAATGC	1 cut(s)	1228
Bsp120I	GGGCCC	1 cut(s)	843
Bsp1286I	GDGCHC	3 cut(s)	422, 847, 1671
Bsp143I	GATC	7 cut(s)	106, 146, 225, 640, 748, 760, 2017
Bsp19I	CCATGG	1 cut(s)	895
BspLI	GGNNCC	9 cut(s)	16, 675, 724, 810, 844, 845, 876, 877, 915
BspMAI	CTGCAG	2 cut(s)	252, 1585
BspMI	ACCTGC	3 cut(s)	1090, 1713, 1744
BspPI	GGATC	4 cut(s)	154, 635, 743, 2012
BspT107I	GGYRCC	2 cut(s)	14, 808
BsrBI	CCGCTC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	11
BsrI	ACTGG	4 cut(s)	731, 967, 1501, 1717
BssAI	RCCGGY	1 cut(s)	11
BssMI	GATC	7 cut(s)	106, 146, 225, 640, 748, 760, 2017
BssT1I	CCWWGG	4 cut(s)	388, 653, 857, 895
Bst2UI	CCWGG	6 cut(s)	336, 660, 693, 720, 825, 1937
Bst4CI	ACNGT	3 cut(s)	411, 628, 1552
Bst6I	CTCTTC	1 cut(s)	336
BstAPI	GCANNNNNTGC	2 cut(s)	1232, 1459
BstC8I	GCNNGC	7 cut(s)	6, 989, 1132, 1401, 1405, 1425, 1839
BstDSI	CCRYGG	2 cut(s)	91, 895
BstF5I	GGATG	8 cut(s)	76, 533, 784, 812, 919, 1687, 1879, 2064
BstH2I	RGCGCY	1 cut(s)	595
BstHHI	GCGC	3 cut(s)	223, 594, 1831
BstKTI	GATC	7 cut(s)	109, 149, 228, 643, 751, 763, 2020
BstMAI	GTCTC	5 cut(s)	861, 1356, 1422, 1527, 1911
BstMBI	GATC	7 cut(s)	106, 146, 225, 640, 748, 760, 2017
BstNI	CCWGG	6 cut(s)	336, 660, 693, 720, 825, 1937
BstPAI	GACNNNNGTC	1 cut(s)	1192
BstSCI	CCNGG	7 cut(s)	334, 658, 691, 718, 823, 1677, 1935
BstSFI	CTRYAG	3 cut(s)	248, 906, 1581
BstSLI	GKGCMC	1 cut(s)	847
BstV2I	GAAGAC	1 cut(s)	1917
BstXI	CCANNNNNNTGG	1 cut(s)	1943
Bsu36I	CCTNAGG	1 cut(s)	1209
BsuI	GTATCC	1 cut(s)	1679
BtgI	CCRYGG	2 cut(s)	91, 895
BtsCI	GGATG	8 cut(s)	76, 533, 784, 812, 919, 1687, 1879, 2064
BtsIMutI	CAGTG	2 cut(s)	165, 422
BveI	ACCTGC	3 cut(s)	1090, 1713, 1744
Cac8I	GCNNGC	7 cut(s)	6, 989, 1132, 1401, 1405, 1425, 1839
CaiI	CAGNNNCTG	3 cut(s)	167, 1375, 1480
CfoI	GCGC	3 cut(s)	223, 594, 1831
Cfr10I	RCCGGY	1 cut(s)	11
Csp6I	GTAC	5 cut(s)	403, 734, 1541, 1693, 1933
CspCI	CAANNNNNGTGG	4 cut(s)	786, 821, 1588, 1623
CviAII	CATG	5 cut(s)	200, 499, 871, 896, 1175
CviQI	GTAC	5 cut(s)	403, 734, 1541, 1693, 1933
DpnI	GATC	7 cut(s)	108, 148, 227, 642, 750, 762, 2019
DpnII	GATC	7 cut(s)	106, 146, 225, 640, 748, 760, 2017
DrdI	GACNNNNNNGTC	1 cut(s)	1501
DseDI	GACNNNNNNGTC	1 cut(s)	1501
EaeI	YGGCCR	2 cut(s)	892, 1132
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
EciI	GGCGGA	2 cut(s)	39, 1200
Eco130I	CCWWGG	4 cut(s)	388, 653, 857, 895
Eco147I	AGGCCT	2 cut(s)	652, 658
Eco24I	GRGCYC	2 cut(s)	422, 847
Eco47I	GGWCC	7 cut(s)	347, 674, 689, 701, 875, 914, 1213
Eco57I	CTGAAG	2 cut(s)	1328, 1886
Eco81I	CCTNAGG	1 cut(s)	1209
EcoO109I	RGGNCCY	5 cut(s)	347, 674, 843, 875, 914
EcoRII	CCWGG	6 cut(s)	334, 658, 691, 718, 823, 1935
EcoT14I	CCWWGG	4 cut(s)	388, 653, 857, 895
EcoT22I	ATGCAT	2 cut(s)	1228, 1863
EcoT38I	GRGCYC	2 cut(s)	422, 847
ErhI	CCWWGG	4 cut(s)	388, 653, 857, 895
Esp3I	CGTCTC	1 cut(s)	1422
FaeI	CATG	5 cut(s)	203, 502, 874, 899, 1178
FalI	AAGNNNNNCTT	2 cut(s)	661, 693
FaqI	GGGAC	1 cut(s)	888
FatI	CATG	5 cut(s)	199, 498, 870, 895, 1174
FauI	CCCGC	3 cut(s)	13, 557, 1392
FauNDI	CATATG	2 cut(s)	472, 981
FbaI	TGATCA	2 cut(s)	225, 760
FokI	GGATG	8 cut(s)	63, 540, 771, 799, 906, 1694, 1866, 2071
FriOI	GRGCYC	2 cut(s)	422, 847
FspBI	CTAG	3 cut(s)	479, 654, 858
FspI	TGCGCA	1 cut(s)	1830
GlaI	GCGC	3 cut(s)	222, 593, 1830
GsuI	CTGGAG	4 cut(s)	87, 681, 885, 1050
HaeII	RGCGCY	1 cut(s)	595
HapII	CCGG	5 cut(s)	12, 18, 60, 631, 1679
HhaI	GCGC	3 cut(s)	223, 594, 1831
Hin1II	CATG	5 cut(s)	203, 502, 874, 899, 1178
Hin6I	GCGC	3 cut(s)	221, 592, 1829
HinP1I	GCGC	3 cut(s)	221, 592, 1829
HincII	GTYRAC	1 cut(s)	1109
HindII	GTYRAC	1 cut(s)	1109
HindIII	AAGCTT	4 cut(s)	134, 1152, 1405, 1839
HinfI	GANTC	5 cut(s)	178, 520, 534, 665, 958
HpaII	CCGG	5 cut(s)	12, 18, 60, 631, 1679
HphI	GGTGA	4 cut(s)	459, 758, 1014, 1727
Hpy166II	GTNNAC	3 cut(s)	493, 797, 1109
Hpy188I	TCNGA	8 cut(s)	66, 156, 286, 362, 1371, 1494, 1800, 1979
Hpy188III	TCNNGA	5 cut(s)	104, 864, 1944, 1970, 2051
Hpy8I	GTNNAC	3 cut(s)	493, 797, 1109
HpyAV	CCTTC	8 cut(s)	42, 687, 1050, 1055, 1134, 1320, 1365, 1815
HpyCH4III	ACNGT	3 cut(s)	411, 628, 1552
HpyCH4IV	ACGT	2 cut(s)	1306, 1931
HpySE526I	ACGT	2 cut(s)	1306, 1931
Hsp92II	CATG	5 cut(s)	203, 502, 874, 899, 1178
HspAI	GCGC	3 cut(s)	221, 592, 1829
KflI	GGGWCCC	1 cut(s)	875
Ksp22I	TGATCA	2 cut(s)	225, 760
Kzo9I	GATC	7 cut(s)	106, 146, 225, 640, 748, 760, 2017
LmnI	GCTCC	3 cut(s)	1240, 1321, 1615
LweI	GCATC	7 cut(s)	793, 963, 1235, 1362, 1498, 1848, 1870
MaeI	CTAG	3 cut(s)	479, 654, 858
MaeII	ACGT	2 cut(s)	1306, 1931
MaeIII	GTNAC	4 cut(s)	1020, 1170, 1624, 1989
MalI	GATC	7 cut(s)	108, 148, 227, 642, 750, 762, 2019
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	7 cut(s)	106, 146, 225, 640, 748, 760, 2017
MboII	GAAGA	9 cut(s)	206, 299, 323, 497, 1856, 1868, 1892, 1917, 2077
MhlI	GDGCHC	3 cut(s)	422, 847, 1671
MlsI	TGGCCA	1 cut(s)	1134
MluCI	AATT	7 cut(s)	459, 509, 765, 789, 883, 993, 1947
MluNI	TGGCCA	1 cut(s)	1134
MlyI	GAGTC	1 cut(s)	529
MmeI	TCCRAC	3 cut(s)	124, 794, 2053
Mox20I	TGGCCA	1 cut(s)	1134
Mph1103I	ATGCAT	2 cut(s)	1228, 1863
MscI	TGGCCA	1 cut(s)	1134
MseI	TTAA	7 cut(s)	270, 540, 882, 963, 1146, 1268, 2089
Msp20I	TGGCCA	1 cut(s)	1134
MspA1I	CMGCKG	3 cut(s)	1192, 1438, 1580
MspI	CCGG	5 cut(s)	12, 18, 60, 631, 1679
MspR9I	CCNGG	7 cut(s)	336, 660, 693, 720, 825, 1679, 1937
Mva1269I	GAATGC	1 cut(s)	1228
MvaI	CCWGG	6 cut(s)	336, 660, 693, 720, 825, 1937
NciI	CCSGG	1 cut(s)	1679
NcoI	CCATGG	1 cut(s)	895
NdeI	CATATG	2 cut(s)	472, 981
NdeII	GATC	7 cut(s)	106, 146, 225, 640, 748, 760, 2017
NlaIII	CATG	5 cut(s)	203, 502, 874, 899, 1178
NlaIV	GGNNCC	9 cut(s)	16, 675, 724, 810, 844, 845, 876, 877, 915
NmeAIII	GCCGAG	2 cut(s)	578, 1870
NmuCI	GTSAC	1 cut(s)	1020
NsbI	TGCGCA	1 cut(s)	1830
NsiI	ATGCAT	2 cut(s)	1228, 1863
PaqCI	CACCTGC	1 cut(s)	1713
PasI	CCCWGGG	1 cut(s)	719
PceI	AGGCCT	2 cut(s)	652, 658
PctI	GAATGC	1 cut(s)	1228
PfeI	GAWTC	4 cut(s)	178, 534, 665, 958
PflMI	CCANNNNNTGG	2 cut(s)	698, 780
PleI	GAGTC	1 cut(s)	528
PpsI	GAGTC	1 cut(s)	528
PpuMI	RGGWCCY	4 cut(s)	347, 674, 875, 914
PshAI	GACNNNNGTC	1 cut(s)	1192
PsiI	TTATAA	1 cut(s)	1701
Psp5II	RGGWCCY	4 cut(s)	347, 674, 875, 914
Psp6I	CCWGG	6 cut(s)	334, 658, 691, 718, 823, 1935
PspGI	CCWGG	6 cut(s)	334, 658, 691, 718, 823, 1935
PspN4I	GGNNCC	9 cut(s)	16, 675, 724, 810, 844, 845, 876, 877, 915
PspOMI	GGGCCC	1 cut(s)	843
PspPPI	RGGWCCY	4 cut(s)	347, 674, 875, 914
PstI	CTGCAG	2 cut(s)	252, 1585
PstNI	CAGNNNCTG	3 cut(s)	167, 1375, 1480
PvuII	CAGCTG	3 cut(s)	1192, 1438, 1580
RsaI	GTAC	5 cut(s)	404, 735, 1542, 1694, 1934
RsaNI	GTAC	5 cut(s)	403, 734, 1541, 1693, 1933
SaqAI	TTAA	7 cut(s)	270, 540, 882, 963, 1146, 1268, 2089
Sau3AI	GATC	7 cut(s)	106, 146, 225, 640, 748, 760, 2017
ScaI	AGTACT	1 cut(s)	1694
SchI	GAGTC	1 cut(s)	529
ScrFI	CCNGG	7 cut(s)	336, 660, 693, 720, 825, 1679, 1937
SduI	GDGCHC	3 cut(s)	422, 847, 1671
SfaNI	GCATC	7 cut(s)	793, 963, 1235, 1362, 1498, 1848, 1870
SfcI	CTRYAG	3 cut(s)	248, 906, 1581
SgrAI	CRCCGGYG	1 cut(s)	11
SinI	GGWCC	7 cut(s)	347, 674, 689, 701, 875, 914, 1213
Sse9I	AATT	7 cut(s)	459, 509, 765, 789, 883, 993, 1947
SseBI	AGGCCT	2 cut(s)	652, 658
SspMI	CTAG	3 cut(s)	479, 654, 858
StuI	AGGCCT	2 cut(s)	652, 658
StyD4I	CCNGG	7 cut(s)	334, 658, 691, 718, 823, 1677, 1935
StyI	CCWWGG	4 cut(s)	388, 653, 857, 895
TaaI	ACNGT	3 cut(s)	411, 628, 1552
TaiI	ACGT	2 cut(s)	1309, 1934
TaqI	TCGA	2 cut(s)	971, 1280
TasI	AATT	7 cut(s)	459, 509, 765, 789, 883, 993, 1947
TatI	WGTACW	2 cut(s)	402, 1692
TauI	GCSGC	4 cut(s)	11, 55, 894, 1039
TfiI	GAWTC	4 cut(s)	178, 534, 665, 958
Tru1I	TTAA	7 cut(s)	270, 540, 882, 963, 1146, 1268, 2089
Tru9I	TTAA	7 cut(s)	270, 540, 882, 963, 1146, 1268, 2089
TscAI	CASTG	2 cut(s)	172, 429
TseFI	GTSAC	1 cut(s)	1020
Tsp45I	GTSAC	1 cut(s)	1020
TspDTI	ATGAA	5 cut(s)	522, 927, 1037, 1868, 2030
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	2 cut(s)	172, 429
Van91I	CCANNNNNTGG	2 cut(s)	698, 780
VpaK11BI	GGWCC	7 cut(s)	347, 674, 689, 701, 875, 914, 1213
XapI	RAATTY	3 cut(s)	459, 765, 993
XcmI	CCANNNNNNNNNTGG	1 cut(s)	777
XmaJI	CCTAGG	2 cut(s)	653, 857
XspI	CTAG	3 cut(s)	479, 654, 858
ZrmI	AGTACT	1 cut(s)	1694
Zsp2I	ATGCAT	2 cut(s)	1228, 1863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.