Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007740

Physical Location & Seq

Genomic Coordinates Forward (+)

56840695 .. 56847794

Gene Structure 7100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG347100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2625 bp

ATGAGCTCCGCCAGAGCCAAGAACTTCCGCCGCCGCATCGACGACGACGATGATGACGACGCCGATACCCCTTCAACCACCTCCACTCTCAAATCCCTATCAAAACCCTCCTCCTCTTCCTCCGCCAAGCCCAAGAAGCCTCAGAACCAAGCCCCCAAGCTCCTCAGCTTTGCCGACGACGAAGAAAACGCCACGCCGTCTCGCTCCTCCTCCTCCTCCAAGCGCGACAAGTCGTCTTCTCGCCTCGCCAAGCCCTCCTCAGCTCACAAGCTCACGGCCGCCAAGGACCGTTTGGTAAACTCCTCCTCCTCCGTCTCTTCTTCTCTCCCCTCCAATGTCCAGCCCCAAGCTGGAACTTACACCAAGGAAGCCCTCCGTGAGCTTCAGAAGAACACGCGAACCCTAGCCAGCTCTAGACCCTCCTCCGCCGCCGCCGCCGAGCCCACCATTGTTCTCAAGGGCTTGATTAAGCCCGCCGCCGCCGGCTCCATCGCCGAGGCCGTGAACGGAGCCAGAGAGCTGGACTCCGATAACGACGAAGTGCAAGGAGGGAACAAGGATAGGGTTGATGCCGAGTCACGATTGGCTTCCATGGGGATCGACAAGGATAGGTCGGAGTATCCTGATCAAGCCACCATAGAAGCCATTCGGAAGAAAAGGGAGCGGCTCCGGAAGTCCAAGCCCGCCGCGCCGGATTTCATTTCCTTGGATTCGGGGAGTAATCACGGCGCGGCGGAGGGGTTGAGTGATGAGGAGCCCGAGTTTCGGAACCGAATTGCAATGTTTGGGGAGAAGATGGAGGGTAGTAAGAAGGGTGTGTTTGAGGATGTTGATGATAGGGAAGTAGTGGATGGTGGTGGATTGAGAAAAGAGAGCCTAGTAGTCGAAGATGATGATGAGGATGAAGAAGAGAAGATTTGGGAGGAAGAGCAGTTTAGGAAAGGGTTGGGGAAGAGAGTGGATGATGGGTCTAGTATAGGGGTTAGTGCTAGTGTTCCTAGAGTTCATAGTGTGCCACAACAGCCCAAGGCTACTTACTCTGCAATCGCTGGGTATAGTTTGGCACAGACTCTGCCTGGTGTGTCGAGTATAGGAGGGGCAACAGGAGCATCACAAGGTTCGAATGCTATGTCCATAAATGAGCAAGCTGAAATTGCTCAGAAAGCTTTGCAGGAAAATGTGAAGAAGCTTAAGGAAAGTCACGGAAGAACACAGATGTCACTAACTAAGGCTGATGAGAATTTATCTGCCTCACTATTGAACATTACTGCTCTTGAAAAGTCTCTGTCTGCTGCTGACGTGAAGTACAAGTTCATGCAAGAGCTTCGCGATTTTGTCTCTACCATATGTGACTTTTTGCAGGATAAAGCTCCCTTGATAGAGGAGCTTGAAGATGAAATGCAGAAGCAACGTGATGAACGTGCATCAGCTATTTTTGAAAGAAGAATTGCTGATAATGATGATGAAATGATGGAAGTAGAAGCAGCTGTAAATGCAGCAATGTCTATTTTCAGTAAAGAAGGTACCAGTGCTGAAATAATTGCAGTTGCTAAAAGTGCAGCACAGGCTGCTTCTGCTGCTGTGAGAGAACAAACAAATTTACCAGTCAAGCTAGATGAATTTGGTAGAGATATGAACCTTAAGAAACGTATGGATATGAAAGGCAGGACCGAGGCTCGTCAACGCAGGAGAAAAAGGTATGAAGCTAAGAGAGAGTCATCCATGGATGTGGACAGTCCTAATCGGACGGTTGAAGGAGAATCAAGCACCGATGAGAGTGACAGTGAGAGTAAAGAGTATGAGTCACACCGCCAGTTGGTGCTTGGGACTGCTGATCAAGTTTTCAGTGATGCAGCCGAGGAATATTCACAACTTTCAGCTGTCAAAGAAAGGTTTGAAGAATGGAAGAGAGAGTATCGATCCAGCTACCGTGATGCTTACATGTCATTGAGTGTTCCTGTTATATTCTCTCCGTACGTAAGGCTGGAGCTCTTGAAGTGGGACCCTCTCCGTGAGAACACAGATTTTGTGAATATGAGCTGGCATTTATTATTAGAGAATTATGGTTTACCGGAGGATGGTTCAGATTTTCTATCTGATGATGCTGATGCTAACCTTATCCCTGCATTGGTGGAAAAGGTTGCATTACCCATTTTGCATCATCAAATTGTTCACTGCTGGGATATTCTCAGTACAAGAGAAACAAAGAATGCAGTTGCTGCCACAAGCTTGGTAACAGATTATGTCTCTTCCAGCGAGGCTCTTGAAGATTTATTAGTTGCTATTCACACCCGTCTGGCAGATGCTGTCTCAAAACTTACGGTCCCAACATGGAGCCCTCTTGTATTGAAAGCAGTACCAAATGCTGCAAGAATTGCAGCATATCGATTTGGCATGTCTGTTCGTTTGATGAAAAATATCTGCTTGTGGAAAGAAGTACTTGCTTTGCCAGTTCTAGAGAAGCTTGCTATTAATGAGCTTTTGTGTGGCAAAGTTCTACCTCACATTCGAAGCATTGCTGCCAATGTTAATGATGCAGTTACAAGAACTGAAAGGATTATTGCTTCTCTATCAGGGGTGTGGTCAGGTTCAGATGTCACAGGAGACCGTAGGTATTGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000375 GO:0000377 GO:0000398 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0022402 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045182 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCFC NTR2

Protein Analysis

874

Amino Acids

96.14

Weight (kDa)

5.27

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTR2	PF15458	119 - 401	3e-11	Nineteen complex-related protein 2
GCFC	PF07842	625 - 828	5e-30	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08550
fragaria_vesca	FvH4_4g28100 FvH4_4g28100 FvH4_4g28100 FvH4_4g28100 FvH4_4g28100
malus_domestica	MD13G1046700.v1.1 MD16G1048400.v1.1
prunus_persica	Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1
pyrus_communis	pycom13g04090 pycom16g04230
rosa_chinensis	RchiOBHm_Chr4g0435851
rosa_laevigata	RLG00000006554
rosa_multiflora	Rmu_sc0002642.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377030
rosa_rugosa	Rorug04G0290000
rosa_samantha	Rh4AG344300 Rh4BG353200 Rh4CG367600 Rh4DG347100
rosa_wichuraiana	Rw4G030080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1523
AccB1I	GGYRCC	1 cut(s)	1523
AccBSI	CCGCTC	1 cut(s)	664
AccII	CGCG	5 cut(s)	225, 397, 689, 731, 1329
AccIII	TCCGGA	1 cut(s)	669
AclWI	GGATC	2 cut(s)	605, 1914
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	3 cut(s)	1240, 1597, 1619
AcuI	CTGAAG	1 cut(s)	368
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	6 cut(s)	1307, 1525, 1976, 2194, 2358, 2439
AfiI	CCNNNNNNNGG	5 cut(s)	350, 765, 1816, 2078, 2128
AflII	CTTAAG	2 cut(s)	1190, 1640
AflIII	ACRYGT	1 cut(s)	1941
AhdI	GACNNNNNGTC	1 cut(s)	232
AjiI	CACGTC	1 cut(s)	1300
AjnI	CCWGG	1 cut(s)	1075
Alw21I	GWGCWC	2 cut(s)	8, 1992
Alw26I	GTCTC	7 cut(s)	204, 319, 1287, 1342, 2251, 2314, 2598
AlwI	GGATC	2 cut(s)	605, 1914
AlwNI	CAGNNNCTG	3 cut(s)	1072, 2219, 2306
Ama87I	CYCGRG	1 cut(s)	758
Aor13HI	TCCGGA	1 cut(s)	669
AoxI	GGCC	2 cut(s)	276, 498
ApoI	RAATTY	3 cut(s)	1240, 1597, 1619
ArsI	GACNNNNNNTTYG	2 cut(s)	1115, 1147
AseI	ATTAAT	1 cut(s)	2472
Asp700I	GAANNNNTTC	1 cut(s)	645
Asp718I	GGTACC	1 cut(s)	1523
AspLEI	GCGC	3 cut(s)	225, 691, 731
AspS9I	GGNCC	4 cut(s)	286, 1668, 2002, 2323
AsuII	TTCGAA	2 cut(s)	1121, 2509
AvaI	CYCGRG	1 cut(s)	758
AvaII	GGWCC	4 cut(s)	286, 1668, 2002, 2323
BanI	GGYRCC	1 cut(s)	1523
BanII	GRGCYC	5 cut(s)	8, 444, 759, 1992, 2339
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	2 cut(s)	8, 1992
BbvCI	CCTCAGC	2 cut(s)	164, 259
BccI	CCATC	6 cut(s)	497, 790, 845, 959, 1465, 2072
BceAI	ACGGC	4 cut(s)	181, 291, 485, 742
BcgI	CGANNNNNNTGC	2 cut(s)	1307, 1341
BciT130I	CCWGG	1 cut(s)	1077
BciVI	GTATCC	1 cut(s)	630
BclI	TGATCA	2 cut(s)	625, 1834
BcoDI	GTCTC	7 cut(s)	204, 319, 1287, 1342, 2251, 2314, 2598
BfaI	CTAG	8 cut(s)	404, 414, 878, 972, 990, 999, 1613, 2456
BfrI	CTTAAG	2 cut(s)	1190, 1640
BfuI	GTATCC	1 cut(s)	630
BmcAI	AGTACT	1 cut(s)	2439
Bme1390I	CCNGG	1 cut(s)	1077
Bme18I	GGWCC	4 cut(s)	286, 1668, 2002, 2323
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	758
BmgBI	CACGTC	1 cut(s)	1300
BmgT120I	GGNCC	4 cut(s)	286, 1668, 2002, 2323
BmrFI	CCNGG	1 cut(s)	1077
BpiI	GAAGAC	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	509, 541
BpmI	CTGGAG	1 cut(s)	2006
Bpu10I	CCTNAGC	2 cut(s)	164, 259
Bpu14I	TTCGAA	2 cut(s)	1121, 2509
BpuEI	CTTGAG	1 cut(s)	440
Bsa29I	ATCGAT	2 cut(s)	1918, 2386
BsaAI	YACGTR	1 cut(s)	1978
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	2598
BsaJI	CCNNGG	9 cut(s)	282, 363, 495, 591, 705, 1026, 1671, 1722, 1857
BsaWI	WCCGGW	2 cut(s)	669, 2071
BsaXI	ACNNNNNCTCC	4 cut(s)	290, 320, 746, 776
Bsc4I	CCNNNNNNNGG	5 cut(s)	350, 765, 1816, 2078, 2128
Bse118I	RCCGGY	1 cut(s)	482
Bse1I	ACTGG	4 cut(s)	1527, 1604, 1813, 2450
Bse3DI	GCAATG	3 cut(s)	786, 1506, 2514
BseAI	TCCGGA	1 cut(s)	669
BseBI	CCWGG	1 cut(s)	1077
BseCI	ATCGAT	2 cut(s)	1918, 2386
BseDI	CCNNGG	9 cut(s)	282, 363, 495, 591, 705, 1026, 1671, 1722, 1857
BseGI	GGATG	7 cut(s)	832, 856, 907, 967, 1718, 1732, 2083
BseLI	CCNNNNNNNGG	5 cut(s)	350, 765, 1816, 2078, 2128
BseMI	GCAATG	3 cut(s)	786, 1506, 2514
BseMII	CTCAG	5 cut(s)	155, 178, 273, 1172, 2203
BseNI	ACTGG	4 cut(s)	1527, 1604, 1813, 2450
BseX3I	CGGCCG	1 cut(s)	276
BseYI	CCCAGC	2 cut(s)	1049, 2178
BsgI	GTGCAG	1 cut(s)	1578
Bsh1236I	CGCG	5 cut(s)	225, 397, 689, 731, 1329
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	278, 500
BshNI	GGYRCC	1 cut(s)	1523
BshVI	ATCGAT	2 cut(s)	1918, 2386
BsiEI	CGRYCG	1 cut(s)	279
BsiHKAI	GWGCWC	2 cut(s)	8, 1992
BsiHKCI	CYCGRG	1 cut(s)	758
BsiSI	CCGG	4 cut(s)	483, 670, 692, 2072
BsiWI	CGTACG	1 cut(s)	1974
BslFI	GGGAC	3 cut(s)	1840, 2015, 2309
BslI	CCNNNNNNNGG	5 cut(s)	350, 765, 1816, 2078, 2128
BsmAI	GTCTC	7 cut(s)	204, 319, 1287, 1342, 2251, 2314, 2598
BsmBI	CGTCTC	2 cut(s)	204, 319
BsmFI	GGGAC	3 cut(s)	1840, 2015, 2309
BsmI	GAATGC	2 cut(s)	1129, 2215
BsnI	GGCC	2 cut(s)	278, 500
Bso31I	GGTCTC	1 cut(s)	2598
BsoBI	CYCGRG	1 cut(s)	758
Bsp119I	TTCGAA	2 cut(s)	1121, 2509
Bsp1286I	GDGCHC	5 cut(s)	8, 444, 759, 1992, 2339
Bsp13I	TCCGGA	1 cut(s)	669
Bsp143I	GATC	4 cut(s)	597, 625, 1834, 1919
Bsp19I	CCATGG	2 cut(s)	591, 1722
Bsp68I	TCGCGA	1 cut(s)	1329
BspANI	GGCC	2 cut(s)	278, 500
BspCNI	CTCAG	5 cut(s)	154, 177, 272, 1171, 2202
BspDI	ATCGAT	2 cut(s)	1918, 2386
BspEI	TCCGGA	1 cut(s)	669
BspFNI	CGCG	5 cut(s)	225, 397, 689, 731, 1329
BspPI	GGATC	2 cut(s)	605, 1914
BspQI	GCTCTTC	1 cut(s)	921
BspT104I	TTCGAA	2 cut(s)	1121, 2509
BspT107I	GGYRCC	1 cut(s)	1523
BspTI	CTTAAG	2 cut(s)	1190, 1640
BspTNI	GGTCTC	1 cut(s)	2598
BsrBI	CCGCTC	1 cut(s)	664
BsrDI	GCAATG	3 cut(s)	786, 1506, 2514
BsrFI	RCCGGY	1 cut(s)	482
BsrI	ACTGG	4 cut(s)	1527, 1604, 1813, 2450
BssAI	RCCGGY	1 cut(s)	482
BssECI	CCNNGG	9 cut(s)	282, 363, 495, 591, 705, 1026, 1671, 1722, 1857
BssMI	GATC	4 cut(s)	597, 625, 1834, 1919
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	6 cut(s)	282, 363, 591, 705, 1026, 1722
Bst2UI	CCWGG	1 cut(s)	1077
Bst4CI	ACNGT	7 cut(s)	290, 1736, 1750, 1784, 1931, 2323, 2609
Bst6I	CTCTTC	7 cut(s)	121, 322, 903, 921, 947, 1901, 2254
BstACI	GRCGYC	1 cut(s)	60
BstAFI	CTTAAG	2 cut(s)	1190, 1640
BstAPI	GCANNNNNTGC	3 cut(s)	1568, 2219, 2375
BstBAI	YACGTR	1 cut(s)	1978
BstBI	TTCGAA	2 cut(s)	1121, 2509
BstC8I	GCNNGC	7 cut(s)	409, 474, 484, 684, 1146, 2042, 2466
BstDEI	CTNAG	7 cut(s)	141, 164, 259, 1158, 1227, 1707, 2189
BstDSI	CCRYGG	2 cut(s)	591, 1722
BstF5I	GGATG	7 cut(s)	832, 856, 907, 967, 1718, 1732, 2083
BstFNI	CGCG	5 cut(s)	225, 397, 689, 731, 1329
BstHHI	GCGC	3 cut(s)	225, 691, 731
BstKTI	GATC	4 cut(s)	600, 628, 1837, 1922
BstMAI	GTCTC	7 cut(s)	204, 319, 1287, 1342, 2251, 2314, 2598
BstMBI	GATC	4 cut(s)	597, 625, 1834, 1919
BstMCI	CGRYCG	1 cut(s)	279
BstNI	CCWGG	1 cut(s)	1077
BstNSI	RCATGY	2 cut(s)	1945, 2398
BstSCI	CCNGG	1 cut(s)	1075
BstSNI	TACGTA	1 cut(s)	1978
BstUI	CGCG	5 cut(s)	225, 397, 689, 731, 1329
BstV2I	GAAGAC	1 cut(s)	228
BstXI	CCANNNNNNTGG	3 cut(s)	520, 1729, 2230
BstZI	CGGCCG	1 cut(s)	276
Bsu15I	ATCGAT	2 cut(s)	1918, 2386
BsuI	GTATCC	1 cut(s)	630
BsuRI	GGCC	2 cut(s)	278, 500
BsuTUI	ATCGAT	2 cut(s)	1918, 2386
BtgI	CCRYGG	2 cut(s)	591, 1722
BtgZI	GCGATG	1 cut(s)	475
BtrI	CACGTC	1 cut(s)	1300
BtsCI	GGATG	7 cut(s)	832, 856, 907, 967, 1718, 1732, 2083
BtsI	GCAGTG	1 cut(s)	2173
BtsIMutI	CAGTG	4 cut(s)	1534, 1789, 1852, 2173
BtuMI	TCGCGA	1 cut(s)	1329
Cac8I	GCNNGC	7 cut(s)	409, 474, 484, 684, 1146, 2042, 2466
CaiI	CAGNNNCTG	3 cut(s)	1072, 2219, 2306
CfoI	GCGC	3 cut(s)	225, 691, 731
Cfr10I	RCCGGY	1 cut(s)	482
Cfr13I	GGNCC	4 cut(s)	286, 1668, 2002, 2323
ClaI	ATCGAT	2 cut(s)	1918, 2386
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	6 cut(s)	1306, 1524, 1975, 2193, 2357, 2438
CviAII	CATG	6 cut(s)	592, 1315, 1723, 1942, 2331, 2395
CviQI	GTAC	6 cut(s)	1306, 1524, 1975, 2193, 2357, 2438
DdeI	CTNAG	7 cut(s)	141, 164, 259, 1158, 1227, 1707, 2189
DpnI	GATC	4 cut(s)	599, 627, 1836, 1921
DpnII	GATC	4 cut(s)	597, 625, 1834, 1919
DriI	GACNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	276
EagI	CGGCCG	1 cut(s)	276
Eam1104I	CTCTTC	7 cut(s)	121, 322, 903, 921, 947, 1901, 2254
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	7 cut(s)	121, 322, 903, 921, 947, 1901, 2254
EciI	GGCGGA	4 cut(s)	17, 112, 415, 749
Ecl136II	GAGCTC	2 cut(s)	6, 1990
EclXI	CGGCCG	1 cut(s)	276
Eco105I	TACGTA	1 cut(s)	1978
Eco130I	CCWWGG	6 cut(s)	282, 363, 591, 705, 1026, 1722
Eco24I	GRGCYC	5 cut(s)	8, 444, 759, 1992, 2339
Eco31I	GGTCTC	1 cut(s)	2598
Eco47I	GGWCC	4 cut(s)	286, 1668, 2002, 2323
Eco52I	CGGCCG	1 cut(s)	276
Eco53kI	GAGCTC	2 cut(s)	6, 1990
Eco57I	CTGAAG	1 cut(s)	368
Eco88I	CYCGRG	1 cut(s)	758
EcoICRI	GAGCTC	2 cut(s)	6, 1990
EcoO109I	RGGNCCY	1 cut(s)	2002
EcoRII	CCWGG	1 cut(s)	1075
EcoT14I	CCWWGG	6 cut(s)	282, 363, 591, 705, 1026, 1722
EcoT38I	GRGCYC	5 cut(s)	8, 444, 759, 1992, 2339
ErhI	CCWWGG	6 cut(s)	282, 363, 591, 705, 1026, 1722
Esp3I	CGTCTC	2 cut(s)	204, 319
FaeI	CATG	6 cut(s)	595, 1318, 1726, 1945, 2334, 2398
FalI	AAGNNNNNCTT	2 cut(s)	2424, 2456
FaqI	GGGAC	3 cut(s)	1840, 2015, 2309
FatI	CATG	6 cut(s)	591, 1314, 1722, 1941, 2330, 2394
FauI	CCCGC	2 cut(s)	481, 691
FauNDI	CATATG	1 cut(s)	1346
FbaI	TGATCA	2 cut(s)	625, 1834
FokI	GGATG	7 cut(s)	839, 863, 914, 974, 1705, 1739, 2090
FriOI	GRGCYC	5 cut(s)	8, 444, 759, 1992, 2339
FspBI	CTAG	8 cut(s)	404, 414, 878, 972, 990, 999, 1613, 2456
GlaI	GCGC	3 cut(s)	224, 690, 730
GsaI	CCCAGC	2 cut(s)	1053, 2182
GsuI	CTGGAG	1 cut(s)	2006
HaeIII	GGCC	2 cut(s)	278, 500
HapII	CCGG	4 cut(s)	483, 670, 692, 2072
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	3 cut(s)	225, 691, 731
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	6 cut(s)	595, 1318, 1726, 1945, 2334, 2398
Hin6I	GCGC	3 cut(s)	223, 689, 729
HinP1I	GCGC	3 cut(s)	223, 689, 729
HincII	GTYRAC	1 cut(s)	1682
HindII	GTYRAC	1 cut(s)	1682
HindIII	AAGCTT	4 cut(s)	1164, 1187, 2227, 2462
HinfI	GANTC	7 cut(s)	524, 575, 710, 1069, 1715, 1760, 1802
HpaII	CCGG	4 cut(s)	483, 670, 692, 2072
Hpy166II	GTNNAC	6 cut(s)	298, 505, 1682, 1732, 2069, 2173
Hpy188III	TCNNGA	9 cut(s)	414, 579, 623, 670, 1274, 1328, 1993, 2264, 2456
Hpy8I	GTNNAC	6 cut(s)	298, 505, 1682, 1732, 2069, 2173
Hpy99I	CGWCG	7 cut(s)	44, 47, 50, 62, 179, 182, 539
HpyAV	CCTTC	4 cut(s)	81, 805, 1514, 1748
HpyCH4III	ACNGT	7 cut(s)	290, 1736, 1750, 1784, 1931, 2323, 2609
HpyCH4IV	ACGT	5 cut(s)	1299, 1411, 1420, 1648, 1977
HpyF3I	CTNAG	7 cut(s)	141, 164, 259, 1158, 1227, 1707, 2189
HpySE526I	ACGT	5 cut(s)	1299, 1411, 1420, 1648, 1977
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	6 cut(s)	595, 1318, 1726, 1945, 2334, 2398
HspAI	GCGC	3 cut(s)	223, 689, 729
KflI	GGGWCCC	1 cut(s)	2002
Kpn2I	TCCGGA	1 cut(s)	669
KpnI	GGTACC	1 cut(s)	1527
KroI	GCCGGC	1 cut(s)	482
KroNI	GCCGGC	1 cut(s)	484
Ksp22I	TGATCA	2 cut(s)	625, 1834
Kzo9I	GATC	4 cut(s)	597, 625, 1834, 1919
LguI	GCTCTTC	1 cut(s)	921
MaeI	CTAG	8 cut(s)	404, 414, 878, 972, 990, 999, 1613, 2456
MaeII	ACGT	5 cut(s)	1299, 1411, 1420, 1648, 1977
MaeIII	GTNAC	9 cut(s)	576, 1199, 1218, 1349, 1778, 1803, 2233, 2539, 2596
MalI	GATC	4 cut(s)	599, 627, 1836, 1921
MbiI	CCGCTC	1 cut(s)	664
MboI	GATC	4 cut(s)	597, 625, 1834, 1919
MhlI	GDGCHC	5 cut(s)	8, 444, 759, 1992, 2339
MlyI	GAGTC	5 cut(s)	518, 584, 1063, 1724, 1811
MmeI	TCCRAC	1 cut(s)	594
MroI	TCCGGA	1 cut(s)	669
MroNI	GCCGGC	1 cut(s)	482
MroXI	GAANNNNTTC	1 cut(s)	645
MseI	TTAA	5 cut(s)	468, 1191, 1641, 2472, 2529
MslI	CAYNNNNRTG	1 cut(s)	1727
MspA1I	CMGCKG	2 cut(s)	1487, 1880
MspCI	CTTAAG	2 cut(s)	1190, 1640
MspI	CCGG	4 cut(s)	483, 670, 692, 2072
MspR9I	CCNGG	1 cut(s)	1077
Mva1269I	GAATGC	2 cut(s)	1129, 2215
MvaI	CCWGG	1 cut(s)	1077
MvnI	CGCG	5 cut(s)	225, 397, 689, 731, 1329
NaeI	GCCGGC	1 cut(s)	484
NcoI	CCATGG	2 cut(s)	591, 1722
NdeI	CATATG	1 cut(s)	1346
NdeII	GATC	4 cut(s)	597, 625, 1834, 1919
NgoMIV	GCCGGC	1 cut(s)	482
NlaIII	CATG	6 cut(s)	595, 1318, 1726, 1945, 2334, 2398
NmeAIII	GCCGAG	4 cut(s)	463, 520, 598, 1882
NmuCI	GTSAC	7 cut(s)	576, 1199, 1218, 1349, 1778, 1803, 2596
NruI	TCGCGA	1 cut(s)	1329
NspI	RCATGY	2 cut(s)	1945, 2398
NspV	TTCGAA	2 cut(s)	1121, 2509
PciI	ACATGT	1 cut(s)	1941
PciSI	GCTCTTC	1 cut(s)	921
PcsI	WCGNNNNNNNCGW	4 cut(s)	45, 54, 498, 1417
PctI	GAATGC	2 cut(s)	1129, 2215
PdiI	GCCGGC	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	645
PfeI	GAWTC	2 cut(s)	710, 1760
Pfl23II	CGTACG	1 cut(s)	1974
PleI	GAGTC	5 cut(s)	518, 583, 1063, 1723, 1810
PpsI	GAGTC	5 cut(s)	518, 583, 1063, 1723, 1810
Ppu21I	YACGTR	1 cut(s)	1978
PpuMI	RGGWCCY	1 cut(s)	2002
PscI	ACATGT	1 cut(s)	1941
PshBI	ATTAAT	1 cut(s)	2472
Psp124BI	GAGCTC	2 cut(s)	8, 1992
Psp5II	RGGWCCY	1 cut(s)	2002
Psp6I	CCWGG	1 cut(s)	1075
PspFI	CCCAGC	2 cut(s)	1049, 2178
PspGI	CCWGG	1 cut(s)	1075
PspLI	CGTACG	1 cut(s)	1974
PspPI	GGNCC	4 cut(s)	286, 1668, 2002, 2323
PspPPI	RGGWCCY	1 cut(s)	2002
PstNI	CAGNNNCTG	3 cut(s)	1072, 2219, 2306
PvuII	CAGCTG	2 cut(s)	1487, 1880
RruI	TCGCGA	1 cut(s)	1329
RsaI	GTAC	6 cut(s)	1307, 1525, 1976, 2194, 2358, 2439
RsaNI	GTAC	6 cut(s)	1306, 1524, 1975, 2193, 2357, 2438
RseI	CAYNNNNRTG	1 cut(s)	1727
SacI	GAGCTC	2 cut(s)	8, 1992
SapI	GCTCTTC	1 cut(s)	921
SaqAI	TTAA	5 cut(s)	468, 1191, 1641, 2472, 2529
Sau3AI	GATC	4 cut(s)	597, 625, 1834, 1919
Sau96I	GGNCC	4 cut(s)	286, 1668, 2002, 2323
ScaI	AGTACT	1 cut(s)	2439
SchI	GAGTC	5 cut(s)	518, 584, 1063, 1724, 1811
ScrFI	CCNGG	1 cut(s)	1077
SduI	GDGCHC	5 cut(s)	8, 444, 759, 1992, 2339
SfuI	TTCGAA	2 cut(s)	1121, 2509
SinI	GGWCC	4 cut(s)	286, 1668, 2002, 2323
SmiMI	CAYNNNNRTG	1 cut(s)	1727
SmlI	CTYRAG	3 cut(s)	455, 1190, 1640
SmoI	CTYRAG	3 cut(s)	455, 1190, 1640
SnaBI	TACGTA	1 cut(s)	1978
SspI	AATATT	1 cut(s)	1865
SspMI	CTAG	8 cut(s)	404, 414, 878, 972, 990, 999, 1613, 2456
SstI	GAGCTC	2 cut(s)	8, 1992
StyD4I	CCNGG	1 cut(s)	1075
StyI	CCWWGG	6 cut(s)	282, 363, 591, 705, 1026, 1722
TaaI	ACNGT	7 cut(s)	290, 1736, 1750, 1784, 1931, 2323, 2609
TaiI	ACGT	5 cut(s)	1302, 1414, 1423, 1651, 1980
TaqI	TCGA	8 cut(s)	39, 600, 885, 1085, 1121, 1918, 2386, 2509
TaqII	GACCGA	1 cut(s)	1685
TatI	WGTACW	3 cut(s)	1305, 2192, 2437
TfiI	GAWTC	2 cut(s)	710, 1760
Tru1I	TTAA	5 cut(s)	468, 1191, 1641, 2472, 2529
Tru9I	TTAA	5 cut(s)	468, 1191, 1641, 2472, 2529
TscAI	CASTG	4 cut(s)	1534, 1789, 1852, 2180
TseFI	GTSAC	7 cut(s)	576, 1199, 1218, 1349, 1778, 1803, 2596
Tsp45I	GTSAC	7 cut(s)	576, 1199, 1218, 1349, 1778, 1803, 2596
TspGWI	ACGGA	6 cut(s)	301, 365, 522, 1218, 1962, 2000
TspRI	CASTG	4 cut(s)	1534, 1789, 1852, 2180
Vha464I	CTTAAG	2 cut(s)	1190, 1640
VpaK11BI	GGWCC	4 cut(s)	286, 1668, 2002, 2323
VspI	ATTAAT	1 cut(s)	2472
XapI	RAATTY	3 cut(s)	1240, 1597, 1619
XbaI	TCTAGA	2 cut(s)	413, 2455
XceI	RCATGY	2 cut(s)	1945, 2398
XcmI	CCANNNNNNNNNTGG	3 cut(s)	289, 347, 1820
XmnI	GAANNNNTTC	1 cut(s)	645
XspI	CTAG	8 cut(s)	404, 414, 878, 972, 990, 999, 1613, 2456
ZrmI	AGTACT	1 cut(s)	2439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.