Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007740

Physical Location & Seq

Genomic Coordinates Forward (+)

59265491 .. 59272366

Gene Structure 6876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40425

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2793 bp

ATGAGCTCCGCCAGAGCGAAGAACTTCCGCCGCCGCATCGACGACGACGATGATGACGACGCCGATACCCCTTCAACCACCTCCACTCTCAAATCCCTATCAAAACCCTCCTCCTCTTCCTCCGCCTCCGCCTCCGCCAAGCCCAAGAAGCCTCAGAGCCAAGCCCCCAAGCTCCTCAGCTTCGCCGACGACGAAGAAAACGCCACGCCGTCTCGCTCCTCCTCCAAGCGCGACAAGTCGTCTTCTCGCCTCGCCAAGCCCTCCTCAGCTCACAAGCTCACGGCCGCCAAGGACCGTTTGGTAAACTCCTCCTCCTCCTCCTCCGTCTCTTCTTCTCTTCCCTCCAATGTCCAGCCCCAAGCTGGAACTTACACCAAGGAAGCCCTCCGTGAGCTTCAGAAGAACACGCGAACCCTAGCCAGCTCTAGACCTTCCTCCGCCGCCGCCGCCGAGCCCACCATTGTTCTCAAGGGCTTGATTAAGCCCGCCGAGGCCGTGAACGGAGCGAGAGAGCTGGACTCCGATAACGACGAAGTGCAAGGAGGGAACAAGGATAGGGTTGATGCCGAGTCACGATTGGCTTCCATGGGGATCGACAAGGATAGGTCGGAGTATCCTGATCAAGCCACCATAGAAGCCATTCGGAAGAAAAGGGAGCGGCTCCGGAAGTCCAAGCCCGCCGCGCCGGATTTCATTTCATTGGATTCGGGGAGTAATCACGGCGCGGCGGAGGGGTTGAGTGATGAGGAGCCCGAGTTTCGGAACCGAATTGCAATGTTTGGGGAGAAGATGGAGGGTAGTAAGAAGGGTGTGTTTGAGGATGTTGATGATAGGGAAGTGGATGGTGGTGGATTGAGAAAAGAGAGCCTAGTAGTCGGAGATGACGATGAGGATGAAGAAGAGAAGATTTGGGAGGAAGAGCAGTTTAGGAAAGGGTTGGGGAAGAGAGTGGATGATGGCTCTAGTATAGGGGTTAGTGCTAGTGTTCCTAGAGTTCATAGTGTGCCACAGCCCAAGGCTACTTACTCTGCAATCGCTGGCTATAGTTTGGCACAGACTCTGCCTGGTGTGTCGAGTATAGGAGGGGCAACAGGAGCATCACAAGGTTCGAATGCTATGTCCATAAATGAGCAAGCTGAAATTGCTCAGAAAGCTTTGCAGGAAAATGTGAAGAAGCTTAAGGAAAGTCACGGAAGAACACAGATGTCACTAACTAAGGCTGATGAGAATTTATCCGCCTCACTATTGAACATTACTGCTCTTGAAAAGTCTCTGTCTGCTGCTGACGTGAAGTACAAGTTCATGCAAGAGCTTCGCGATTTTGTCTCTACCATATGTGACTTTTTGCAGGATAAGGCTCCCTTGATAGAGGAGCTTGAAGAGGAAATGCAGAAGCAACGTGATGAACGTGCATCAGCTATTTTTGAAAGAAGAATTGCTGATAATGATGATGAAATGATGGAAGTAGAAGCAGCTGTAAATGCAGCAATGTCTATTTTCAGTAAAGAAGGTACCAGTGCTGAAATAATTGCAGTTGCTAAAAGTGCAGCACAGGCTGCTTCTGCTGCTGTGAGAGAACAAACAAATTTACCAGTCAAGCTAGATGAATTTGGTAGAGATATGAACCTTAAGAAACGTATGGATATGAAAAGCAGGGCCGAGGCTCGTCAACGCAGGAGAAAAAGGTATGAAGCTAAGAGAGAGTCATCCATGGATGTGGACAGTCCTAATCGGACGGTTGAAGGAGAATCAAGCACCGATGAGAGTGACAGTGAGAGTAAAGAGTACGAGTCACACCGCCAGTTGGTGCTTGGGACTGCTGATCAAGTTTTCAGTGATGCAGCTGAGGAATATTCACAACTTTCAGCTGTCAAAGAAAGGTTTGAAGAATGGAAGAGAGAGTATCGATCCAGCTACCGTGATGCTTACATGTCATTGAGTGTTCCTGTTATATTCTCTCCGTACGTAAGGCTGGAGCTCTTGAAGTGGGACCCTCTCCGTGAGAACACAGATTTTGTGAATATGAGCTGGCATTTATTATTAGAGAATTACGGTTTACCGGAGGATGGTTCGGATTTTCTATCTGATGATGCTGATGCTAACCTTATCCCTGCATTGGTGGAAAAGGTTGCATTACCCATTTTGCATCATCAAATTGTTCACTGCTGGGATATTCTCAGTACAAGAGAAACAAAGAATGCAGTTGCTGCCACAAGCTTGGTAACAGATTATGTCTCTTCCAGTGAGGCTCTTGAAGATTTATTAGTAGCTATTCACACCCGTCTGGCAGATGCTGTCTCAAAACTTACGGTCCCAACATGGAGCCCTCTTGTATTGAAAGCAGTACCAAATGCTGCAAGAATTGCAGCATATCGATTTGGGATGTCTGTTCGTTTGATGAAAAATATCTGCTTGTGGAAAGAAGTACTTGCTTTGCCAGTTCTAGAGAAGCTTGCTATTAATGAACTTTTGTGTGGCAAAGTTCTACCTCACATTCGAAGCATTGCTGCCAATGTTAATGATGCAGTTACAAGAACTGAAAGGATTATTGCTTCTCTATCAGGGGTGTGGTCAGGTTCAGATGTCACAGGAGACCGTAGCCGCAAGTTGCAATCACTGGTGGATTATGTGCTGACGCTGGGAAAGACTATAGAGAAGAAGCATTCGCTGGGTGTGACACAAAGTGAAACTGGTGGACTGGCTCGTAGATTGAAGAAGATGCTGGTTGAGCTCAACGAGTATGACAAGGCGAGGGACGTAGCTAGGACCTTCCATCTTAAAGAGGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000375 GO:0000377 GO:0000398 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0022402 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045182 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCFC NTR2

Protein Analysis

930

Amino Acids

102.35

Weight (kDa)

5.53

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTR2	PF15458	123 - 399	8.7e-12	Nineteen complex-related protein 2
GCFC	PF07842	621 - 824	5.7e-30	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08550
fragaria_vesca	FvH4_4g28100 FvH4_4g28100 FvH4_4g28100 FvH4_4g28100 FvH4_4g28100
malus_domestica	MD13G1046700.v1.1 MD16G1048400.v1.1
prunus_persica	Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1
pyrus_communis	pycom13g04090 pycom16g04230
rosa_chinensis	RchiOBHm_Chr4g0435851
rosa_laevigata	RLG00000006554
rosa_multiflora	Rmu_sc0002642.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377030
rosa_rugosa	Rorug04G0290000
rosa_samantha	Rh4AG344300 Rh4BG353200 Rh4CG367600 Rh4DG347100
rosa_wichuraiana	Rw4G030080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1511
AccB1I	GGYRCC	1 cut(s)	1511
AccBSI	CCGCTC	1 cut(s)	658
AccII	CGCG	5 cut(s)	231, 409, 683, 725, 1317
AccIII	TCCGGA	1 cut(s)	663
AclWI	GGATC	2 cut(s)	599, 1902
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	3 cut(s)	1228, 1585, 1607
AcuI	CTGAAG	1 cut(s)	380
AcyI	GRCGYC	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	2684
AfaI	GTAC	7 cut(s)	1295, 1513, 1787, 1964, 2182, 2346, 2427
AfiI	CCNNNNNNNGG	5 cut(s)	362, 759, 1804, 2066, 2116
AflII	CTTAAG	2 cut(s)	1178, 1628
AflIII	ACRYGT	1 cut(s)	1929
AhdI	GACNNNNNGTC	1 cut(s)	238
AjiI	CACGTC	1 cut(s)	1288
AjnI	CCWGG	1 cut(s)	1063
Alw21I	GWGCWC	3 cut(s)	8, 1980, 2733
Alw26I	GTCTC	7 cut(s)	216, 331, 1275, 1330, 2239, 2302, 2586
AlwI	GGATC	2 cut(s)	599, 1902
AlwNI	CAGNNNCTG	3 cut(s)	1060, 2207, 2294
Ama87I	CYCGRG	1 cut(s)	752
Aor13HI	TCCGGA	1 cut(s)	663
AoxI	GGCC	3 cut(s)	282, 492, 1656
ApoI	RAATTY	3 cut(s)	1228, 1585, 1607
ArsI	GACNNNNNNTTYG	2 cut(s)	1103, 1135
AseI	ATTAAT	1 cut(s)	2460
Asp700I	GAANNNNTTC	2 cut(s)	23, 639
Asp718I	GGTACC	1 cut(s)	1511
AspLEI	GCGC	3 cut(s)	231, 685, 725
AspS9I	GGNCC	5 cut(s)	292, 1656, 1990, 2311, 2766
AsuII	TTCGAA	2 cut(s)	1109, 2497
AvaI	CYCGRG	1 cut(s)	752
AvaII	GGWCC	4 cut(s)	292, 1990, 2311, 2766
BanI	GGYRCC	1 cut(s)	1511
BanII	GRGCYC	6 cut(s)	8, 456, 753, 1980, 2327, 2733
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	3 cut(s)	8, 1980, 2733
BbvCI	CCTCAGC	3 cut(s)	176, 265, 1845
BccI	CCATC	6 cut(s)	784, 836, 950, 1453, 2060, 2781
BceAI	ACGGC	4 cut(s)	193, 297, 479, 736
BcgI	CGANNNNNNTGC	2 cut(s)	1295, 1329
BciT130I	CCWGG	1 cut(s)	1065
BciVI	GTATCC	1 cut(s)	624
BclI	TGATCA	2 cut(s)	619, 1822
BcoDI	GTCTC	7 cut(s)	216, 331, 1275, 1330, 2239, 2302, 2586
BfaI	CTAG	9 cut(s)	416, 426, 869, 963, 981, 990, 1601, 2444, 2763
BfmI	CTRYAG	2 cut(s)	1042, 2649
BfrI	CTTAAG	2 cut(s)	1178, 1628
BfuI	GTATCC	1 cut(s)	624
BmcAI	AGTACT	1 cut(s)	2427
Bme1390I	CCNGG	1 cut(s)	1065
Bme18I	GGWCC	4 cut(s)	292, 1990, 2311, 2766
BmeRI	GACNNNNNGTC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	752
BmgBI	CACGTC	1 cut(s)	1288
BmgT120I	GGNCC	5 cut(s)	292, 1656, 1990, 2311, 2766
BmiI	GGNNCC	9 cut(s)	662, 750, 764, 1359, 1513, 1991, 1992, 2313, 2324
BmrFI	CCNGG	1 cut(s)	1065
BpiI	GAAGAC	1 cut(s)	234
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BpmI	CTGGAG	1 cut(s)	1994
Bpu10I	CCTNAGC	3 cut(s)	176, 265, 1845
Bpu14I	TTCGAA	2 cut(s)	1109, 2497
BpuEI	CTTGAG	1 cut(s)	452
Bsa29I	ATCGAT	2 cut(s)	1906, 2374
BsaAI	YACGTR	1 cut(s)	1966
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	2586
BsaJI	CCNNGG	7 cut(s)	288, 375, 489, 585, 1014, 1659, 1710
BsaWI	WCCGGW	2 cut(s)	663, 2059
BsaXI	ACNNNNNCTCC	4 cut(s)	296, 326, 740, 770
Bsc4I	CCNNNNNNNGG	5 cut(s)	362, 759, 1804, 2066, 2116
Bse1I	ACTGG	8 cut(s)	1515, 1592, 1801, 2241, 2438, 2622, 2695, 2703
Bse3DI	GCAATG	3 cut(s)	780, 1494, 2502
BseAI	TCCGGA	1 cut(s)	663
BseBI	CCWGG	1 cut(s)	1065
BseCI	ATCGAT	2 cut(s)	1906, 2374
BseDI	CCNNGG	7 cut(s)	288, 375, 489, 585, 1014, 1659, 1710
BseGI	GGATG	8 cut(s)	826, 847, 898, 958, 1706, 1720, 2071, 2388
BseLI	CCNNNNNNNGG	5 cut(s)	362, 759, 1804, 2066, 2116
BseMI	GCAATG	3 cut(s)	780, 1494, 2502
BseMII	CTCAG	6 cut(s)	167, 190, 279, 1160, 1836, 2191
BseNI	ACTGG	8 cut(s)	1515, 1592, 1801, 2241, 2438, 2622, 2695, 2703
BseX3I	CGGCCG	1 cut(s)	282
BseYI	CCCAGC	3 cut(s)	2166, 2638, 2668
BsgI	GTGCAG	1 cut(s)	1566
Bsh1236I	CGCG	5 cut(s)	231, 409, 683, 725, 1317
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	3 cut(s)	284, 494, 1658
BshNI	GGYRCC	1 cut(s)	1511
BshVI	ATCGAT	2 cut(s)	1906, 2374
BsiEI	CGRYCG	1 cut(s)	285
BsiHKAI	GWGCWC	3 cut(s)	8, 1980, 2733
BsiHKCI	CYCGRG	1 cut(s)	752
BsiSI	CCGG	3 cut(s)	664, 686, 2060
BsiWI	CGTACG	1 cut(s)	1962
BslFI	GGGAC	4 cut(s)	1828, 2003, 2297, 2768
BslI	CCNNNNNNNGG	5 cut(s)	362, 759, 1804, 2066, 2116
BsmAI	GTCTC	7 cut(s)	216, 331, 1275, 1330, 2239, 2302, 2586
BsmBI	CGTCTC	2 cut(s)	216, 331
BsmFI	GGGAC	4 cut(s)	1828, 2003, 2297, 2768
BsmI	GAATGC	3 cut(s)	1117, 2203, 2662
BsnI	GGCC	3 cut(s)	284, 494, 1658
Bso31I	GGTCTC	1 cut(s)	2586
BsoBI	CYCGRG	1 cut(s)	752
Bsp119I	TTCGAA	2 cut(s)	1109, 2497
Bsp1286I	GDGCHC	6 cut(s)	8, 456, 753, 1980, 2327, 2733
Bsp13I	TCCGGA	1 cut(s)	663
Bsp143I	GATC	4 cut(s)	591, 619, 1822, 1907
Bsp19I	CCATGG	2 cut(s)	585, 1710
Bsp68I	TCGCGA	1 cut(s)	1317
BspANI	GGCC	3 cut(s)	284, 494, 1658
BspCNI	CTCAG	6 cut(s)	166, 189, 278, 1159, 1837, 2190
BspDI	ATCGAT	2 cut(s)	1906, 2374
BspEI	TCCGGA	1 cut(s)	663
BspFNI	CGCG	5 cut(s)	231, 409, 683, 725, 1317
BspLI	GGNNCC	9 cut(s)	662, 750, 764, 1359, 1513, 1991, 1992, 2313, 2324
BspPI	GGATC	2 cut(s)	599, 1902
BspQI	GCTCTTC	1 cut(s)	912
BspT104I	TTCGAA	2 cut(s)	1109, 2497
BspT107I	GGYRCC	1 cut(s)	1511
BspTI	CTTAAG	2 cut(s)	1178, 1628
BspTNI	GGTCTC	1 cut(s)	2586
BsrBI	CCGCTC	1 cut(s)	658
BsrDI	GCAATG	3 cut(s)	780, 1494, 2502
BsrI	ACTGG	8 cut(s)	1515, 1592, 1801, 2241, 2438, 2622, 2695, 2703
BssECI	CCNNGG	7 cut(s)	288, 375, 489, 585, 1014, 1659, 1710
BssMI	GATC	4 cut(s)	591, 619, 1822, 1907
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	5 cut(s)	288, 375, 585, 1014, 1710
Bst2UI	CCWGG	1 cut(s)	1065
Bst4CI	ACNGT	8 cut(s)	296, 1724, 1738, 1772, 1919, 2054, 2311, 2597
Bst6I	CTCTTC	9 cut(s)	121, 334, 342, 894, 912, 938, 1374, 1889, 2242
BstACI	GRCGYC	1 cut(s)	60
BstAFI	CTTAAG	2 cut(s)	1178, 1628
BstAPI	GCANNNNNTGC	3 cut(s)	1556, 2207, 2363
BstBAI	YACGTR	1 cut(s)	1966
BstBI	TTCGAA	2 cut(s)	1109, 2497
BstC8I	GCNNGC	7 cut(s)	421, 486, 678, 1039, 1134, 2030, 2454
BstDEI	CTNAG	8 cut(s)	153, 176, 265, 1146, 1215, 1695, 1845, 2177
BstDSI	CCRYGG	2 cut(s)	585, 1710
BstF5I	GGATG	8 cut(s)	826, 847, 898, 958, 1706, 1720, 2071, 2388
BstFNI	CGCG	5 cut(s)	231, 409, 683, 725, 1317
BstHHI	GCGC	3 cut(s)	231, 685, 725
BstKTI	GATC	4 cut(s)	594, 622, 1825, 1910
BstMAI	GTCTC	7 cut(s)	216, 331, 1275, 1330, 2239, 2302, 2586
BstMBI	GATC	4 cut(s)	591, 619, 1822, 1907
BstMCI	CGRYCG	1 cut(s)	285
BstNI	CCWGG	1 cut(s)	1065
BstNSI	RCATGY	1 cut(s)	1933
BstSCI	CCNGG	1 cut(s)	1063
BstSFI	CTRYAG	2 cut(s)	1042, 2649
BstSNI	TACGTA	1 cut(s)	1966
BstUI	CGCG	5 cut(s)	231, 409, 683, 725, 1317
BstV2I	GAAGAC	1 cut(s)	234
BstXI	CCANNNNNNTGG	2 cut(s)	1717, 2218
BstZI	CGGCCG	1 cut(s)	282
Bsu15I	ATCGAT	2 cut(s)	1906, 2374
BsuI	GTATCC	1 cut(s)	624
BsuRI	GGCC	3 cut(s)	284, 494, 1658
BsuTUI	ATCGAT	2 cut(s)	1906, 2374
BtgI	CCRYGG	2 cut(s)	585, 1710
BtrI	CACGTC	1 cut(s)	1288
BtsCI	GGATG	8 cut(s)	826, 847, 898, 958, 1706, 1720, 2071, 2388
BtsI	GCAGTG	1 cut(s)	2161
BtsIMutI	CAGTG	6 cut(s)	1522, 1777, 1840, 2161, 2248, 2615
BtuMI	TCGCGA	1 cut(s)	1317
Cac8I	GCNNGC	7 cut(s)	421, 486, 678, 1039, 1134, 2030, 2454
CaiI	CAGNNNCTG	3 cut(s)	1060, 2207, 2294
CfoI	GCGC	3 cut(s)	231, 685, 725
Cfr13I	GGNCC	5 cut(s)	292, 1656, 1990, 2311, 2766
ClaI	ATCGAT	2 cut(s)	1906, 2374
CseI	GACGC	2 cut(s)	68, 2644
Csp6I	GTAC	7 cut(s)	1294, 1512, 1786, 1963, 2181, 2345, 2426
CviAII	CATG	5 cut(s)	586, 1303, 1711, 1930, 2319
CviQI	GTAC	7 cut(s)	1294, 1512, 1786, 1963, 2181, 2345, 2426
DdeI	CTNAG	8 cut(s)	153, 176, 265, 1146, 1215, 1695, 1845, 2177
DpnI	GATC	4 cut(s)	593, 621, 1824, 1909
DpnII	GATC	4 cut(s)	591, 619, 1822, 1907
DraIII	CACNNNGTG	1 cut(s)	2684
DriI	GACNNNNNGTC	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	282
EagI	CGGCCG	1 cut(s)	282
Eam1104I	CTCTTC	9 cut(s)	121, 334, 342, 894, 912, 938, 1374, 1889, 2242
Eam1105I	GACNNNNNGTC	1 cut(s)	238
EarI	CTCTTC	9 cut(s)	121, 334, 342, 894, 912, 938, 1374, 1889, 2242
EciI	GGCGGA	7 cut(s)	17, 112, 118, 124, 427, 743, 1225
Ecl136II	GAGCTC	3 cut(s)	6, 1978, 2731
EclXI	CGGCCG	1 cut(s)	282
Eco105I	TACGTA	1 cut(s)	1966
Eco130I	CCWWGG	5 cut(s)	288, 375, 585, 1014, 1710
Eco24I	GRGCYC	6 cut(s)	8, 456, 753, 1980, 2327, 2733
Eco31I	GGTCTC	1 cut(s)	2586
Eco47I	GGWCC	4 cut(s)	292, 1990, 2311, 2766
Eco52I	CGGCCG	1 cut(s)	282
Eco53kI	GAGCTC	3 cut(s)	6, 1978, 2731
Eco57I	CTGAAG	1 cut(s)	380
Eco88I	CYCGRG	1 cut(s)	752
EcoICRI	GAGCTC	3 cut(s)	6, 1978, 2731
EcoO109I	RGGNCCY	2 cut(s)	1990, 2766
EcoRII	CCWGG	1 cut(s)	1063
EcoT14I	CCWWGG	5 cut(s)	288, 375, 585, 1014, 1710
EcoT38I	GRGCYC	6 cut(s)	8, 456, 753, 1980, 2327, 2733
ErhI	CCWWGG	5 cut(s)	288, 375, 585, 1014, 1710
Esp3I	CGTCTC	2 cut(s)	216, 331
FaeI	CATG	5 cut(s)	589, 1306, 1714, 1933, 2322
FalI	AAGNNNNNCTT	4 cut(s)	1346, 1378, 2412, 2444
FaqI	GGGAC	4 cut(s)	1828, 2003, 2297, 2768
FatI	CATG	5 cut(s)	585, 1302, 1710, 1929, 2318
FauI	CCCGC	2 cut(s)	493, 685
FauNDI	CATATG	1 cut(s)	1334
FbaI	TGATCA	2 cut(s)	619, 1822
FokI	GGATG	8 cut(s)	833, 854, 905, 965, 1693, 1727, 2078, 2395
FriOI	GRGCYC	6 cut(s)	8, 456, 753, 1980, 2327, 2733
FspBI	CTAG	9 cut(s)	416, 426, 869, 963, 981, 990, 1601, 2444, 2763
GlaI	GCGC	3 cut(s)	230, 684, 724
GsaI	CCCAGC	3 cut(s)	2170, 2642, 2672
GsuI	CTGGAG	1 cut(s)	1994
HaeIII	GGCC	3 cut(s)	284, 494, 1658
HapII	CCGG	3 cut(s)	664, 686, 2060
HgaI	GACGC	2 cut(s)	68, 2644
HhaI	GCGC	3 cut(s)	231, 685, 725
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	5 cut(s)	589, 1306, 1714, 1933, 2322
Hin6I	GCGC	3 cut(s)	229, 683, 723
HinP1I	GCGC	3 cut(s)	229, 683, 723
HincII	GTYRAC	1 cut(s)	1670
HindII	GTYRAC	1 cut(s)	1670
HindIII	AAGCTT	4 cut(s)	1152, 1175, 2215, 2450
HinfI	GANTC	7 cut(s)	518, 569, 704, 1057, 1703, 1748, 1790
HpaII	CCGG	3 cut(s)	664, 686, 2060
Hpy166II	GTNNAC	7 cut(s)	304, 499, 1670, 1720, 2057, 2161, 2696
Hpy188III	TCNNGA	9 cut(s)	426, 573, 617, 664, 1262, 1316, 1981, 2252, 2444
Hpy8I	GTNNAC	7 cut(s)	304, 499, 1670, 1720, 2057, 2161, 2696
Hpy99I	CGWCG	7 cut(s)	44, 47, 50, 62, 191, 194, 533
HpyAV	CCTTC	6 cut(s)	81, 441, 799, 1502, 1736, 2779
HpyCH4III	ACNGT	8 cut(s)	296, 1724, 1738, 1772, 1919, 2054, 2311, 2597
HpyCH4IV	ACGT	6 cut(s)	1287, 1399, 1408, 1636, 1965, 2757
HpyF3I	CTNAG	8 cut(s)	153, 176, 265, 1146, 1215, 1695, 1845, 2177
HpySE526I	ACGT	6 cut(s)	1287, 1399, 1408, 1636, 1965, 2757
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	5 cut(s)	589, 1306, 1714, 1933, 2322
HspAI	GCGC	3 cut(s)	229, 683, 723
KflI	GGGWCCC	1 cut(s)	1990
Kpn2I	TCCGGA	1 cut(s)	663
KpnI	GGTACC	1 cut(s)	1515
Ksp22I	TGATCA	2 cut(s)	619, 1822
Kzo9I	GATC	4 cut(s)	591, 619, 1822, 1907
LguI	GCTCTTC	1 cut(s)	912
MaeI	CTAG	9 cut(s)	416, 426, 869, 963, 981, 990, 1601, 2444, 2763
MaeII	ACGT	6 cut(s)	1287, 1399, 1408, 1636, 1965, 2757
MalI	GATC	4 cut(s)	593, 621, 1824, 1909
MbiI	CCGCTC	1 cut(s)	658
MboI	GATC	4 cut(s)	591, 619, 1822, 1907
MhlI	GDGCHC	6 cut(s)	8, 456, 753, 1980, 2327, 2733
MlyI	GAGTC	5 cut(s)	512, 578, 1051, 1712, 1799
MmeI	TCCRAC	2 cut(s)	588, 856
MroI	TCCGGA	1 cut(s)	663
MroXI	GAANNNNTTC	2 cut(s)	23, 639
MseI	TTAA	6 cut(s)	480, 1179, 1629, 2460, 2517, 2778
MslI	CAYNNNNRTG	1 cut(s)	1715
MspA1I	CMGCKG	3 cut(s)	1475, 1844, 1868
MspCI	CTTAAG	2 cut(s)	1178, 1628
MspI	CCGG	3 cut(s)	664, 686, 2060
MspR9I	CCNGG	1 cut(s)	1065
Mva1269I	GAATGC	3 cut(s)	1117, 2203, 2662
MvaI	CCWGG	1 cut(s)	1065
MvnI	CGCG	5 cut(s)	231, 409, 683, 725, 1317
NcoI	CCATGG	2 cut(s)	585, 1710
NdeI	CATATG	1 cut(s)	1334
NdeII	GATC	4 cut(s)	591, 619, 1822, 1907
NlaIII	CATG	5 cut(s)	589, 1306, 1714, 1933, 2322
NlaIV	GGNNCC	9 cut(s)	662, 750, 764, 1359, 1513, 1991, 1992, 2313, 2324
NmeAIII	GCCGAG	4 cut(s)	475, 514, 592, 1684
NmuCI	GTSAC	8 cut(s)	570, 1187, 1206, 1337, 1766, 1791, 2584, 2674
NruI	TCGCGA	1 cut(s)	1317
NspI	RCATGY	1 cut(s)	1933
NspV	TTCGAA	2 cut(s)	1109, 2497
PciI	ACATGT	1 cut(s)	1929
PciSI	GCTCTTC	1 cut(s)	912
PcsI	WCGNNNNNNNCGW	5 cut(s)	45, 54, 189, 882, 1405
PctI	GAATGC	3 cut(s)	1117, 2203, 2662
PdmI	GAANNNNTTC	2 cut(s)	23, 639
PfeI	GAWTC	2 cut(s)	704, 1748
Pfl23II	CGTACG	1 cut(s)	1962
PleI	GAGTC	5 cut(s)	512, 577, 1051, 1711, 1798
PpsI	GAGTC	5 cut(s)	512, 577, 1051, 1711, 1798
Ppu21I	YACGTR	1 cut(s)	1966
PpuMI	RGGWCCY	2 cut(s)	1990, 2766
PscI	ACATGT	1 cut(s)	1929
PshBI	ATTAAT	1 cut(s)	2460
Psp124BI	GAGCTC	3 cut(s)	8, 1980, 2733
Psp5II	RGGWCCY	2 cut(s)	1990, 2766
Psp6I	CCWGG	1 cut(s)	1063
PspFI	CCCAGC	3 cut(s)	2166, 2638, 2668
PspGI	CCWGG	1 cut(s)	1063
PspLI	CGTACG	1 cut(s)	1962
PspN4I	GGNNCC	9 cut(s)	662, 750, 764, 1359, 1513, 1991, 1992, 2313, 2324
PspPI	GGNCC	5 cut(s)	292, 1656, 1990, 2311, 2766
PspPPI	RGGWCCY	2 cut(s)	1990, 2766
PstNI	CAGNNNCTG	3 cut(s)	1060, 2207, 2294
PvuII	CAGCTG	3 cut(s)	1475, 1844, 1868
RruI	TCGCGA	1 cut(s)	1317
RsaI	GTAC	7 cut(s)	1295, 1513, 1787, 1964, 2182, 2346, 2427
RsaNI	GTAC	7 cut(s)	1294, 1512, 1786, 1963, 2181, 2345, 2426
RseI	CAYNNNNRTG	1 cut(s)	1715
SacI	GAGCTC	3 cut(s)	8, 1980, 2733
SapI	GCTCTTC	1 cut(s)	912
SaqAI	TTAA	6 cut(s)	480, 1179, 1629, 2460, 2517, 2778
Sau3AI	GATC	4 cut(s)	591, 619, 1822, 1907
Sau96I	GGNCC	5 cut(s)	292, 1656, 1990, 2311, 2766
ScaI	AGTACT	1 cut(s)	2427
SchI	GAGTC	5 cut(s)	512, 578, 1051, 1712, 1799
ScrFI	CCNGG	1 cut(s)	1065
SduI	GDGCHC	6 cut(s)	8, 456, 753, 1980, 2327, 2733
SfcI	CTRYAG	2 cut(s)	1042, 2649
SfuI	TTCGAA	2 cut(s)	1109, 2497
SinI	GGWCC	4 cut(s)	292, 1990, 2311, 2766
SmiMI	CAYNNNNRTG	1 cut(s)	1715
SmlI	CTYRAG	3 cut(s)	467, 1178, 1628
SmoI	CTYRAG	3 cut(s)	467, 1178, 1628
SnaBI	TACGTA	1 cut(s)	1966
SspI	AATATT	1 cut(s)	1853
SspMI	CTAG	9 cut(s)	416, 426, 869, 963, 981, 990, 1601, 2444, 2763
SstI	GAGCTC	3 cut(s)	8, 1980, 2733
StyD4I	CCNGG	1 cut(s)	1063
StyI	CCWWGG	5 cut(s)	288, 375, 585, 1014, 1710
TaaI	ACNGT	8 cut(s)	296, 1724, 1738, 1772, 1919, 2054, 2311, 2597
TaiI	ACGT	6 cut(s)	1290, 1402, 1411, 1639, 1968, 2760
TaqI	TCGA	7 cut(s)	39, 594, 1073, 1109, 1906, 2374, 2497
TatI	WGTACW	3 cut(s)	1293, 2180, 2425
TfiI	GAWTC	2 cut(s)	704, 1748
Tru1I	TTAA	6 cut(s)	480, 1179, 1629, 2460, 2517, 2778
Tru9I	TTAA	6 cut(s)	480, 1179, 1629, 2460, 2517, 2778
TscAI	CASTG	6 cut(s)	1522, 1777, 1840, 2168, 2248, 2622
TseFI	GTSAC	8 cut(s)	570, 1187, 1206, 1337, 1766, 1791, 2584, 2674
Tsp45I	GTSAC	8 cut(s)	570, 1187, 1206, 1337, 1766, 1791, 2584, 2674
TspGWI	ACGGA	6 cut(s)	313, 377, 516, 1206, 1950, 1988
TspRI	CASTG	6 cut(s)	1522, 1777, 1840, 2168, 2248, 2622
Vha464I	CTTAAG	2 cut(s)	1178, 1628
VpaK11BI	GGWCC	4 cut(s)	292, 1990, 2311, 2766
VspI	ATTAAT	1 cut(s)	2460
XapI	RAATTY	3 cut(s)	1228, 1585, 1607
XbaI	TCTAGA	2 cut(s)	425, 2443
XceI	RCATGY	1 cut(s)	1933
XcmI	CCANNNNNNNNNTGG	3 cut(s)	295, 359, 1808
XmnI	GAANNNNTTC	2 cut(s)	23, 639
XspI	CTAG	9 cut(s)	416, 426, 869, 963, 981, 990, 1601, 2444, 2763
ZrmI	AGTACT	1 cut(s)	2427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.