Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007740

Physical Location & Seq

Genomic Coordinates Forward (+)

62248342 .. 62255331

Gene Structure 6990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG367600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2607 bp

ATGAGCTCCGCCAGAGCCAAGAACTTCCGCCGCCGCATCGACGACGACGATGATGACGACGCCGATACCCCTTCAACCACCTCCACTCTCAAATCCCTATCAAAACCCTCCTCCTCTTCCTCCGCCAAGCCCAAGAAGCCTCAGAACCAAGCCCCGAAGCTCCTCAGCTTCGCCGACGACGAAGAAAACGCCACGCCGTCTCGCTCCTCCTCCTCCTCCAAGCGCGACAAGTCGTCTTCTCGCCTCGCCAAGCCCTCCTCAGCTCACAAGCTCACGGCCGCCAAGGACCGTTTGCTAAATTCCTCCTCCGTCTCTTCTTCTCTTCCCTCCAATGTCCAGCCCCAAGCTGGAACTTACACCAAGGAAGCCCTCCGTGAGCTTCAGAAGAACACGCGAACCCTAGCCAGCTCTAGACCCTCCTCCGCCGCCGCCGCCGAGCCCACCATTGTTCTCAAGGGCTTGATTAAGCCCGCCGCCGCCGAGGCCGTGAACGGAGCCAGAGAGCTGGACTCCGATGACGACGAAGTGCAAGGGACCAAGGATAGGGTTGATGCCGAGTCACGATTGGCTTCCATGGGGATCGACAAGGATAGGTCGGAGTATCCTGATCAAGCCACCATAGAAGCCATTCGGAAGAAAAGGGAGCGGCTCCGGAAGTCCAAGCCCGCCGCGCCGGATTTCATTTCATTGGATTCGGGGAGTAATCACGGCGCGGCGGAGGGGTTGAGTGATGAGGAGCCGGAGTTTCGGAACCGAATTGCAATGTTTGGGCAGAAGATGGAGGGTAGTAAGAAAGGTGTGTTTGAGGATGTTGATGATAGGGAAGTGGATGGTGGTGGATTGAGGAAAGAGAGCGTAGTAGTCGAAGATGATGATGATGATGAGGATGAAGAAGAGAAGATTTGGGAGGAAGAGCAGTTTAGGAAAGGGTTGGGGAAGAGAGTGGATGATGGGTCTAGTATAGGGGTTAGTGCTAGTGTTCCTAGAGTTCATAGTGTGCCACAGCCCAAGGCTACTTACTCCGCAATCGCTGGGTATAGTTTGGCACAGACTCTGCCTGGTGTGTCGGGTATAGGAGGGGCAACAGGAGCATCACAAGGTTCAAATGCTATGTCCATAAATGAGCAAGCTGAAATTGCTCAGAAAGCTTTGCAGGAAAATGTGAAGAAGCTTAAGGAAAGTCACGGAAGAACAAAGATGTCACTAACTAAGGCTGATGAGAATTTATCTGCCTCACTATTGAACATTACTGCTCTTGAAAAGTCTCTGTCTGCTGCTGACGTGAAGTACAAGTTCATGCAAGAGCTTCGCGACTTTGTCTCTACCATATGTGACTTTTTGCAGGATAAGGCTCCCTTGATAGAGGAGCTTGAAGAGGAAATGCAGAAGCAACGTGATGAACGTGCATCAGCTATTTTTGAAAGAAGAATTGCTGATAACGATGATGAAATGATGGAAGTAGAAGCAGCTGTAAATGCAGCAATGTCTATTTTCAGTAAAGAAGGTACCGGTGCTGATATAATTGCAGTTGCTAAAAGTGCAGCACAGGCTGCTTCTGCTGCTGTGAGAGAACAAACAAATTTACCAGTCAAGCTAGATGAATTTGGTAGAGATATGAACCTTAAGAAACGTATGGATATGAAAGGCAGGGCCGAGGCTCGTCAACGCAGGAGAAAAAAGTATGAAGCTAAGAGAGAGTCATCCATGGATGTGGACAGTCCTAATCGGACGGTTGAAGGAGAATCAAGCACCGATGAGAGTGACAGTGAGAGTAAAGAGTACGAGTCACACCGCCAGTTGGTGCTTGGGACTGCTGATCAAGTTTTCAGTGATGCAGCCGAGGAATATTCACAACTTTCAGCTGTCAAAGAAAGGTTTGAAGAATGGAAGAGAGAGTATCGATCCAGCTACCGTGATGCTTACATGTCATTGAGTGTTCCTGTTATATTCTCTCCGTACGTAAGGCTGGAGCTCTTGAAGTGGGACCCTCTCCGTGAGAACACAGATTTTGTAAATATGAGCTGGCATTTATTATTAGAGAATTATGGTTTACCGGAGGATGGTTCAGATTTTGCATCTGATGATGCTGATGCTAACCTTATCCCTGCATTGGTGGAAAAGGTTGCATTACCCATTTTGCATCATCAAATTGTTCACTGCTGGGATATTCTCAGTACAAGAGAAACAAAGAATGCAGTTGCTGCCACAAGCTTGGTAACAGATTATGTCTCTTCCAGTGAGGCTCTTGAAGATTTATTAGTTGCTATTCACACCCGTCTGGCAGATGCTGTCTCAAAACTTACGGTCCCAACATGGAGCCCTCTTGTATTGAAAGCAGTACCAAATGCTGCAAGAATTGCAGCATATCGATTTGGCATGTCTGTTCGTTTGATGAAAAATATCTGCTTGTGGAAAGAAGTACTTGCTTTGCCAGTTCTAGAGAAGCTTGCTATTAATGAGCTTTTGTGTGGCAAAGTTCTACCTCACATTCGAAGCATTGCTGCCAATGTTAATGATGCAGTTACAAGAACTGAAAGGATTATTGCTTCTCTATCAGGGGTGTGGTCAGGTTCAGATGTCACAGGAGACCGTAGGTATTGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000375 GO:0000377 GO:0000398 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0022402 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045182 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCFC NTR2

Protein Analysis

868

Amino Acids

95.5

Weight (kDa)

5.24

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTR2	PF15458	118 - 358	4.4e-11	Nineteen complex-related protein 2
GCFC	PF07842	619 - 822	2.3e-30	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08550
fragaria_vesca	FvH4_4g28100 FvH4_4g28100 FvH4_4g28100 FvH4_4g28100 FvH4_4g28100
malus_domestica	MD13G1046700.v1.1 MD16G1048400.v1.1
prunus_persica	Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1
pyrus_communis	pycom13g04090 pycom16g04230
rosa_chinensis	RchiOBHm_Chr4g0435851
rosa_laevigata	RLG00000006554
rosa_multiflora	Rmu_sc0002642.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377030
rosa_rugosa	Rorug04G0290000
rosa_samantha	Rh4AG344300 Rh4BG353200 Rh4CG367600 Rh4DG347100
rosa_wichuraiana	Rw4G030080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1505
AccB1I	GGYRCC	1 cut(s)	1505
AccBSI	CCGCTC	1 cut(s)	646
AccII	CGCG	5 cut(s)	225, 394, 671, 713, 1311
AccIII	TCCGGA	1 cut(s)	651
AclWI	GGATC	2 cut(s)	587, 1896
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	4 cut(s)	298, 1222, 1579, 1601
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	7 cut(s)	1289, 1507, 1781, 1958, 2176, 2340, 2421
AfiI	CCNNNNNNNGG	5 cut(s)	347, 543, 1798, 2060, 2110
AflII	CTTAAG	2 cut(s)	1172, 1622
AflIII	ACRYGT	1 cut(s)	1923
AgeI	ACCGGT	1 cut(s)	1508
AhdI	GACNNNNNGTC	1 cut(s)	232
AjiI	CACGTC	1 cut(s)	1282
AjnI	CCWGG	1 cut(s)	1057
Alw21I	GWGCWC	2 cut(s)	8, 1974
Alw26I	GTCTC	7 cut(s)	204, 316, 1269, 1324, 2233, 2296, 2580
AlwI	GGATC	2 cut(s)	587, 1896
AlwNI	CAGNNNCTG	3 cut(s)	1054, 2201, 2288
Aor13HI	TCCGGA	1 cut(s)	651
AoxI	GGCC	3 cut(s)	276, 483, 1650
ApoI	RAATTY	4 cut(s)	298, 1222, 1579, 1601
ArsI	GACNNNNNNTTYG	2 cut(s)	1097, 1129
AseI	ATTAAT	1 cut(s)	2454
AsiGI	ACCGGT	1 cut(s)	1508
Asp700I	GAANNNNTTC	1 cut(s)	627
Asp718I	GGTACC	1 cut(s)	1505
AspLEI	GCGC	3 cut(s)	225, 673, 713
AspS9I	GGNCC	5 cut(s)	286, 534, 1650, 1984, 2305
AsuII	TTCGAA	1 cut(s)	2491
AvaII	GGWCC	4 cut(s)	286, 534, 1984, 2305
BanI	GGYRCC	1 cut(s)	1505
BanII	GRGCYC	4 cut(s)	8, 441, 1974, 2321
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	2 cut(s)	8, 1974
BbvCI	CCTCAGC	2 cut(s)	164, 259
BccI	CCATC	5 cut(s)	772, 824, 944, 1447, 2054
BceAI	ACGGC	4 cut(s)	181, 291, 470, 724
BcgI	CGANNNNNNTGC	2 cut(s)	1289, 1323
BciT130I	CCWGG	1 cut(s)	1059
BciVI	GTATCC	1 cut(s)	612
BclI	TGATCA	2 cut(s)	607, 1816
BcoDI	GTCTC	7 cut(s)	204, 316, 1269, 1324, 2233, 2296, 2580
BfaI	CTAG	7 cut(s)	401, 411, 957, 975, 984, 1595, 2438
BfrI	CTTAAG	2 cut(s)	1172, 1622
BfuI	GTATCC	1 cut(s)	612
BglI	GCCNNNNNGGC	1 cut(s)	482
BmcAI	AGTACT	1 cut(s)	2421
Bme1390I	CCNGG	1 cut(s)	1059
Bme18I	GGWCC	4 cut(s)	286, 534, 1984, 2305
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	1282
BmgT120I	GGNCC	5 cut(s)	286, 534, 1650, 1984, 2305
BmrFI	CCNGG	1 cut(s)	1059
BpiI	GAAGAC	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
BpmI	CTGGAG	1 cut(s)	1988
Bpu10I	CCTNAGC	2 cut(s)	164, 259
Bpu14I	TTCGAA	1 cut(s)	2491
BpuEI	CTTGAG	1 cut(s)	437
Bsa29I	ATCGAT	2 cut(s)	1900, 2368
BsaAI	YACGTR	1 cut(s)	1960
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	2580
BsaJI	CCNNGG	9 cut(s)	282, 360, 480, 537, 573, 1008, 1653, 1704, 1839
BsaWI	WCCGGW	3 cut(s)	651, 1508, 2053
BsaXI	ACNNNNNCTCC	2 cut(s)	728, 758
Bsc4I	CCNNNNNNNGG	5 cut(s)	347, 543, 1798, 2060, 2110
Bse118I	RCCGGY	1 cut(s)	1508
Bse1I	ACTGG	4 cut(s)	1586, 1795, 2235, 2432
Bse3DI	GCAATG	3 cut(s)	768, 1488, 2496
BseAI	TCCGGA	1 cut(s)	651
BseBI	CCWGG	1 cut(s)	1059
BseCI	ATCGAT	2 cut(s)	1900, 2368
BseDI	CCNNGG	9 cut(s)	282, 360, 480, 537, 573, 1008, 1653, 1704, 1839
BseGI	GGATG	7 cut(s)	814, 835, 892, 952, 1700, 1714, 2065
BseLI	CCNNNNNNNGG	5 cut(s)	347, 543, 1798, 2060, 2110
BseMI	GCAATG	3 cut(s)	768, 1488, 2496
BseMII	CTCAG	5 cut(s)	155, 178, 273, 1154, 2185
BseNI	ACTGG	4 cut(s)	1586, 1795, 2235, 2432
BseX3I	CGGCCG	1 cut(s)	276
BseYI	CCCAGC	2 cut(s)	1031, 2160
BsgI	GTGCAG	1 cut(s)	1560
Bsh1236I	CGCG	5 cut(s)	225, 394, 671, 713, 1311
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	3 cut(s)	278, 485, 1652
BshNI	GGYRCC	1 cut(s)	1505
BshTI	ACCGGT	1 cut(s)	1508
BshVI	ATCGAT	2 cut(s)	1900, 2368
BsiEI	CGRYCG	1 cut(s)	279
BsiHKAI	GWGCWC	2 cut(s)	8, 1974
BsiSI	CCGG	5 cut(s)	652, 674, 740, 1509, 2054
BsiWI	CGTACG	1 cut(s)	1956
BslFI	GGGAC	4 cut(s)	547, 1822, 1997, 2291
BslI	CCNNNNNNNGG	5 cut(s)	347, 543, 1798, 2060, 2110
BsmAI	GTCTC	7 cut(s)	204, 316, 1269, 1324, 2233, 2296, 2580
BsmBI	CGTCTC	2 cut(s)	204, 316
BsmFI	GGGAC	4 cut(s)	547, 1822, 1997, 2291
BsmI	GAATGC	1 cut(s)	2197
BsnI	GGCC	3 cut(s)	278, 485, 1652
Bso31I	GGTCTC	1 cut(s)	2580
Bsp119I	TTCGAA	1 cut(s)	2491
Bsp1286I	GDGCHC	4 cut(s)	8, 441, 1974, 2321
Bsp13I	TCCGGA	1 cut(s)	651
Bsp143I	GATC	4 cut(s)	579, 607, 1816, 1901
Bsp19I	CCATGG	2 cut(s)	573, 1704
Bsp68I	TCGCGA	1 cut(s)	1311
BspANI	GGCC	3 cut(s)	278, 485, 1652
BspCNI	CTCAG	5 cut(s)	154, 177, 272, 1153, 2184
BspDI	ATCGAT	2 cut(s)	1900, 2368
BspEI	TCCGGA	1 cut(s)	651
BspFNI	CGCG	5 cut(s)	225, 394, 671, 713, 1311
BspPI	GGATC	2 cut(s)	587, 1896
BspQI	GCTCTTC	1 cut(s)	906
BspT104I	TTCGAA	1 cut(s)	2491
BspT107I	GGYRCC	1 cut(s)	1505
BspTI	CTTAAG	2 cut(s)	1172, 1622
BspTNI	GGTCTC	1 cut(s)	2580
BsrBI	CCGCTC	1 cut(s)	646
BsrDI	GCAATG	3 cut(s)	768, 1488, 2496
BsrFI	RCCGGY	1 cut(s)	1508
BsrI	ACTGG	4 cut(s)	1586, 1795, 2235, 2432
BssAI	RCCGGY	1 cut(s)	1508
BssECI	CCNNGG	9 cut(s)	282, 360, 480, 537, 573, 1008, 1653, 1704, 1839
BssMI	GATC	4 cut(s)	579, 607, 1816, 1901
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	6 cut(s)	282, 360, 537, 573, 1008, 1704
Bst2UI	CCWGG	1 cut(s)	1059
Bst4CI	ACNGT	7 cut(s)	290, 1718, 1732, 1766, 1913, 2305, 2591
Bst6I	CTCTTC	9 cut(s)	121, 319, 327, 888, 906, 932, 1368, 1883, 2236
BstACI	GRCGYC	1 cut(s)	60
BstAFI	CTTAAG	2 cut(s)	1172, 1622
BstAPI	GCANNNNNTGC	3 cut(s)	1550, 2201, 2357
BstBAI	YACGTR	1 cut(s)	1960
BstBI	TTCGAA	1 cut(s)	2491
BstC8I	GCNNGC	6 cut(s)	406, 471, 666, 1128, 2024, 2448
BstDEI	CTNAG	7 cut(s)	141, 164, 259, 1140, 1209, 1689, 2171
BstDSI	CCRYGG	2 cut(s)	573, 1704
BstF5I	GGATG	7 cut(s)	814, 835, 892, 952, 1700, 1714, 2065
BstFNI	CGCG	5 cut(s)	225, 394, 671, 713, 1311
BstHHI	GCGC	3 cut(s)	225, 673, 713
BstKTI	GATC	4 cut(s)	582, 610, 1819, 1904
BstMAI	GTCTC	7 cut(s)	204, 316, 1269, 1324, 2233, 2296, 2580
BstMBI	GATC	4 cut(s)	579, 607, 1816, 1901
BstMCI	CGRYCG	1 cut(s)	279
BstNI	CCWGG	1 cut(s)	1059
BstNSI	RCATGY	2 cut(s)	1927, 2380
BstSCI	CCNGG	1 cut(s)	1057
BstSNI	TACGTA	1 cut(s)	1960
BstUI	CGCG	5 cut(s)	225, 394, 671, 713, 1311
BstV2I	GAAGAC	1 cut(s)	228
BstXI	CCANNNNNNTGG	3 cut(s)	505, 1711, 2212
BstZI	CGGCCG	1 cut(s)	276
Bsu15I	ATCGAT	2 cut(s)	1900, 2368
BsuI	GTATCC	1 cut(s)	612
BsuRI	GGCC	3 cut(s)	278, 485, 1652
BsuTUI	ATCGAT	2 cut(s)	1900, 2368
BtgI	CCRYGG	2 cut(s)	573, 1704
BtrI	CACGTC	1 cut(s)	1282
BtsCI	GGATG	7 cut(s)	814, 835, 892, 952, 1700, 1714, 2065
BtsI	GCAGTG	1 cut(s)	2155
BtsIMutI	CAGTG	4 cut(s)	1771, 1834, 2155, 2242
BtuMI	TCGCGA	1 cut(s)	1311
Cac8I	GCNNGC	6 cut(s)	406, 471, 666, 1128, 2024, 2448
CaiI	CAGNNNCTG	3 cut(s)	1054, 2201, 2288
CfoI	GCGC	3 cut(s)	225, 673, 713
Cfr10I	RCCGGY	1 cut(s)	1508
Cfr13I	GGNCC	5 cut(s)	286, 534, 1650, 1984, 2305
ClaI	ATCGAT	2 cut(s)	1900, 2368
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	7 cut(s)	1288, 1506, 1780, 1957, 2175, 2339, 2420
CspAI	ACCGGT	1 cut(s)	1508
CviAII	CATG	6 cut(s)	574, 1297, 1705, 1924, 2313, 2377
CviQI	GTAC	7 cut(s)	1288, 1506, 1780, 1957, 2175, 2339, 2420
DdeI	CTNAG	7 cut(s)	141, 164, 259, 1140, 1209, 1689, 2171
DpnI	GATC	4 cut(s)	581, 609, 1818, 1903
DpnII	GATC	4 cut(s)	579, 607, 1816, 1901
DriI	GACNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	276
EagI	CGGCCG	1 cut(s)	276
Eam1104I	CTCTTC	9 cut(s)	121, 319, 327, 888, 906, 932, 1368, 1883, 2236
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	9 cut(s)	121, 319, 327, 888, 906, 932, 1368, 1883, 2236
EciI	GGCGGA	4 cut(s)	17, 112, 412, 731
Ecl136II	GAGCTC	2 cut(s)	6, 1972
EclXI	CGGCCG	1 cut(s)	276
Eco105I	TACGTA	1 cut(s)	1960
Eco130I	CCWWGG	6 cut(s)	282, 360, 537, 573, 1008, 1704
Eco24I	GRGCYC	4 cut(s)	8, 441, 1974, 2321
Eco31I	GGTCTC	1 cut(s)	2580
Eco47I	GGWCC	4 cut(s)	286, 534, 1984, 2305
Eco52I	CGGCCG	1 cut(s)	276
Eco53kI	GAGCTC	2 cut(s)	6, 1972
Eco57I	CTGAAG	1 cut(s)	365
EcoICRI	GAGCTC	2 cut(s)	6, 1972
EcoO109I	RGGNCCY	1 cut(s)	1984
EcoRII	CCWGG	1 cut(s)	1057
EcoT14I	CCWWGG	6 cut(s)	282, 360, 537, 573, 1008, 1704
EcoT38I	GRGCYC	4 cut(s)	8, 441, 1974, 2321
ErhI	CCWWGG	6 cut(s)	282, 360, 537, 573, 1008, 1704
Esp3I	CGTCTC	2 cut(s)	204, 316
FaeI	CATG	6 cut(s)	577, 1300, 1708, 1927, 2316, 2380
FalI	AAGNNNNNCTT	4 cut(s)	1340, 1372, 2406, 2438
FaqI	GGGAC	4 cut(s)	547, 1822, 1997, 2291
FatI	CATG	6 cut(s)	573, 1296, 1704, 1923, 2312, 2376
FauI	CCCGC	2 cut(s)	478, 673
FauNDI	CATATG	1 cut(s)	1328
FbaI	TGATCA	2 cut(s)	607, 1816
FokI	GGATG	7 cut(s)	821, 842, 899, 959, 1687, 1721, 2072
FriOI	GRGCYC	4 cut(s)	8, 441, 1974, 2321
FspBI	CTAG	7 cut(s)	401, 411, 957, 975, 984, 1595, 2438
GlaI	GCGC	3 cut(s)	224, 672, 712
GsaI	CCCAGC	2 cut(s)	1035, 2164
GsuI	CTGGAG	1 cut(s)	1988
HaeIII	GGCC	3 cut(s)	278, 485, 1652
HapII	CCGG	5 cut(s)	652, 674, 740, 1509, 2054
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	3 cut(s)	225, 673, 713
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	6 cut(s)	577, 1300, 1708, 1927, 2316, 2380
Hin6I	GCGC	3 cut(s)	223, 671, 711
HinP1I	GCGC	3 cut(s)	223, 671, 711
HincII	GTYRAC	1 cut(s)	1664
HindII	GTYRAC	1 cut(s)	1664
HindIII	AAGCTT	4 cut(s)	1146, 1169, 2209, 2444
HinfI	GANTC	7 cut(s)	509, 557, 692, 1051, 1697, 1742, 1784
HpaII	CCGG	5 cut(s)	652, 674, 740, 1509, 2054
Hpy166II	GTNNAC	5 cut(s)	490, 1664, 1714, 2051, 2155
Hpy188III	TCNNGA	9 cut(s)	411, 561, 605, 652, 1256, 1310, 1975, 2246, 2438
Hpy8I	GTNNAC	5 cut(s)	490, 1664, 1714, 2051, 2155
Hpy99I	CGWCG	7 cut(s)	44, 47, 50, 62, 179, 182, 524
HpyAV	CCTTC	3 cut(s)	81, 1496, 1730
HpyCH4III	ACNGT	7 cut(s)	290, 1718, 1732, 1766, 1913, 2305, 2591
HpyCH4IV	ACGT	5 cut(s)	1281, 1393, 1402, 1630, 1959
HpyF3I	CTNAG	7 cut(s)	141, 164, 259, 1140, 1209, 1689, 2171
HpySE526I	ACGT	5 cut(s)	1281, 1393, 1402, 1630, 1959
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	6 cut(s)	577, 1300, 1708, 1927, 2316, 2380
HspAI	GCGC	3 cut(s)	223, 671, 711
KflI	GGGWCCC	1 cut(s)	1984
Kpn2I	TCCGGA	1 cut(s)	651
KpnI	GGTACC	1 cut(s)	1509
Ksp22I	TGATCA	2 cut(s)	607, 1816
Kzo9I	GATC	4 cut(s)	579, 607, 1816, 1901
LguI	GCTCTTC	1 cut(s)	906
MaeI	CTAG	7 cut(s)	401, 411, 957, 975, 984, 1595, 2438
MaeII	ACGT	5 cut(s)	1281, 1393, 1402, 1630, 1959
MaeIII	GTNAC	9 cut(s)	558, 1181, 1200, 1331, 1760, 1785, 2215, 2521, 2578
MalI	GATC	4 cut(s)	581, 609, 1818, 1903
MbiI	CCGCTC	1 cut(s)	646
MboI	GATC	4 cut(s)	579, 607, 1816, 1901
MhlI	GDGCHC	4 cut(s)	8, 441, 1974, 2321
MlyI	GAGTC	5 cut(s)	503, 566, 1045, 1706, 1793
MmeI	TCCRAC	1 cut(s)	576
MroI	TCCGGA	1 cut(s)	651
MroXI	GAANNNNTTC	1 cut(s)	627
MseI	TTAA	5 cut(s)	465, 1173, 1623, 2454, 2511
MslI	CAYNNNNRTG	1 cut(s)	1709
MspA1I	CMGCKG	2 cut(s)	1469, 1862
MspCI	CTTAAG	2 cut(s)	1172, 1622
MspI	CCGG	5 cut(s)	652, 674, 740, 1509, 2054
MspR9I	CCNGG	1 cut(s)	1059
Mva1269I	GAATGC	1 cut(s)	2197
MvaI	CCWGG	1 cut(s)	1059
MvnI	CGCG	5 cut(s)	225, 394, 671, 713, 1311
NcoI	CCATGG	2 cut(s)	573, 1704
NdeI	CATATG	1 cut(s)	1328
NdeII	GATC	4 cut(s)	579, 607, 1816, 1901
NlaIII	CATG	6 cut(s)	577, 1300, 1708, 1927, 2316, 2380
NmeAIII	GCCGAG	5 cut(s)	460, 505, 580, 1678, 1864
NmuCI	GTSAC	7 cut(s)	558, 1181, 1200, 1331, 1760, 1785, 2578
NruI	TCGCGA	1 cut(s)	1311
NspI	RCATGY	2 cut(s)	1927, 2380
NspV	TTCGAA	1 cut(s)	2491
PciI	ACATGT	1 cut(s)	1923
PciSI	GCTCTTC	1 cut(s)	906
PcsI	WCGNNNNNNNCGW	4 cut(s)	45, 54, 177, 1399
PctI	GAATGC	1 cut(s)	2197
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	2 cut(s)	692, 1742
Pfl23II	CGTACG	1 cut(s)	1956
PflFI	GACNNNGTC	1 cut(s)	1316
PinAI	ACCGGT	1 cut(s)	1508
PleI	GAGTC	5 cut(s)	503, 565, 1045, 1705, 1792
PpsI	GAGTC	5 cut(s)	503, 565, 1045, 1705, 1792
Ppu21I	YACGTR	1 cut(s)	1960
PpuMI	RGGWCCY	1 cut(s)	1984
PscI	ACATGT	1 cut(s)	1923
PshBI	ATTAAT	1 cut(s)	2454
Psp124BI	GAGCTC	2 cut(s)	8, 1974
Psp5II	RGGWCCY	1 cut(s)	1984
Psp6I	CCWGG	1 cut(s)	1057
PspFI	CCCAGC	2 cut(s)	1031, 2160
PspGI	CCWGG	1 cut(s)	1057
PspLI	CGTACG	1 cut(s)	1956
PspPI	GGNCC	5 cut(s)	286, 534, 1650, 1984, 2305
PspPPI	RGGWCCY	1 cut(s)	1984
PstNI	CAGNNNCTG	3 cut(s)	1054, 2201, 2288
PsyI	GACNNNGTC	1 cut(s)	1316
PvuII	CAGCTG	2 cut(s)	1469, 1862
RruI	TCGCGA	1 cut(s)	1311
RsaI	GTAC	7 cut(s)	1289, 1507, 1781, 1958, 2176, 2340, 2421
RsaNI	GTAC	7 cut(s)	1288, 1506, 1780, 1957, 2175, 2339, 2420
RseI	CAYNNNNRTG	1 cut(s)	1709
SacI	GAGCTC	2 cut(s)	8, 1974
SapI	GCTCTTC	1 cut(s)	906
SaqAI	TTAA	5 cut(s)	465, 1173, 1623, 2454, 2511
Sau3AI	GATC	4 cut(s)	579, 607, 1816, 1901
Sau96I	GGNCC	5 cut(s)	286, 534, 1650, 1984, 2305
ScaI	AGTACT	1 cut(s)	2421
SchI	GAGTC	5 cut(s)	503, 566, 1045, 1706, 1793
ScrFI	CCNGG	1 cut(s)	1059
SduI	GDGCHC	4 cut(s)	8, 441, 1974, 2321
SfuI	TTCGAA	1 cut(s)	2491
SinI	GGWCC	4 cut(s)	286, 534, 1984, 2305
SmiMI	CAYNNNNRTG	1 cut(s)	1709
SmlI	CTYRAG	3 cut(s)	452, 1172, 1622
SmoI	CTYRAG	3 cut(s)	452, 1172, 1622
SnaBI	TACGTA	1 cut(s)	1960
SspI	AATATT	1 cut(s)	1847
SspMI	CTAG	7 cut(s)	401, 411, 957, 975, 984, 1595, 2438
SstI	GAGCTC	2 cut(s)	8, 1974
StyD4I	CCNGG	1 cut(s)	1057
StyI	CCWWGG	6 cut(s)	282, 360, 537, 573, 1008, 1704
TaaI	ACNGT	7 cut(s)	290, 1718, 1732, 1766, 1913, 2305, 2591
TaiI	ACGT	5 cut(s)	1284, 1396, 1405, 1633, 1962
TaqI	TCGA	6 cut(s)	39, 582, 864, 1900, 2368, 2491
TatI	WGTACW	3 cut(s)	1287, 2174, 2419
TfiI	GAWTC	2 cut(s)	692, 1742
Tru1I	TTAA	5 cut(s)	465, 1173, 1623, 2454, 2511
Tru9I	TTAA	5 cut(s)	465, 1173, 1623, 2454, 2511
TscAI	CASTG	4 cut(s)	1771, 1834, 2162, 2242
TseFI	GTSAC	7 cut(s)	558, 1181, 1200, 1331, 1760, 1785, 2578
Tsp45I	GTSAC	7 cut(s)	558, 1181, 1200, 1331, 1760, 1785, 2578
TspGWI	ACGGA	6 cut(s)	298, 362, 507, 1200, 1944, 1982
TspRI	CASTG	4 cut(s)	1771, 1834, 2162, 2242
Tth111I	GACNNNGTC	1 cut(s)	1316
Vha464I	CTTAAG	2 cut(s)	1172, 1622
VpaK11BI	GGWCC	4 cut(s)	286, 534, 1984, 2305
VspI	ATTAAT	1 cut(s)	2454
XapI	RAATTY	4 cut(s)	298, 1222, 1579, 1601
XbaI	TCTAGA	2 cut(s)	410, 2437
XceI	RCATGY	2 cut(s)	1927, 2380
XcmI	CCANNNNNNNNNTGG	2 cut(s)	344, 1802
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	7 cut(s)	401, 411, 957, 975, 984, 1595, 2438
ZrmI	AGTACT	1 cut(s)	2421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.