Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007740

Physical Location & Seq

Genomic Coordinates Forward (+)

57581205 .. 57587575

Gene Structure 6371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00377030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2907 bp

ATGAGCTCCGCCAGAGCCAAGAACTTCCGCCGCCGCATCGACGACGACGATGATGACGACGCCGATACCCCTTCAACCACCTCCACTCTCAAATCCCTATCAAAACCCTCCTTCTCCGCCTCCGCCTCCGCCAAGCCCAAGAAGCCTCAGAACCAAGCCCCCAAGCTCCTCAGCTTCGCCGACGACGAAGAAAACGCCACGCCGTCTCGCTCCTCCTCCAAGCGCGACAAGTCGTCTTCTCGCCTCGCCAAGCCCTCCTCAGCTCACAAGCTCACGGCCGCCAAGGACCGTTTGGTGAATTCCTCCTCCGTCTCTTCTTCTCTTCCCTCCAATGTCCAGCCCCAAGCTGGAACTTACACCAAGGAAGCCCTCCGTGAGCTTCAGAAGAACACGCGAACCCTAGCCAGCTCCAGACCCTCCGCCGAGCCCACCATTGTTCTCAAGGGCTTGATTAAGCCCGCCGCCGGCTCGATCGCCGAGGCCGTGAACGGAGCCAGAGAGCTGGACTCCGATGACGACGAAGTGCAAGGGAACAAGGATAGGGTTGATGCCGAGTCACGATTGGCTTCCATGGGGATCGACAAGGATAGGTCGGAGTATCCTGATCAAGCCACCATAGAAGCCATTCGGAAGAAAAGGGAGCGGCTCCGGAAGTCCAAGCCCGCCGCGCCGGATTTCATTTCATTGGATTCGGGGAGTAATCACGGCGCGGCGGAGGGGTTGAGTGATGAGGAGCCGGAGTTTCGGAACCGAATTGCAATGTTTGGGGAGAAGATGGAGGGTAGTAAGAAAGGTGTGTTTGAGGATGTTGATGATAGGGAAGTGGATAGTGGTGGATTGAGAAAAGAGAGCGTAGTAGTCGAAGATGATGATGATGATGATGAGGATGAAGAAGAGAAGATTTGGGAGGAAGAGCAGTTTAGGAAAGGGTTGGGGAAGAGAGTGGATGATGGGTCTAGTATAGGGGTTACTGCTAGTGTTCCTAGAGTTCAGAGTGTGCCACAGCCCAAGGTTACTTACTCCTCAATCGCTGGGTATAGTTTGGCACAGACTCTGCCTGGTGTGTCGAGTATAGGAGGGGCAACAGGAGCATCACAAGGTTCGAATGCTTTGTCCATAAATGAGCAAGCTGAAATTGCTCAGAAAGCTTTGCAGGAAAATGTGAAGAAGCTTAAGGTACGAATTGCTCTTCTTGTTGAATTTGATGAATGCTGGCGGTATATTTTCTTGGCATATGTGCTGATGCTTGATGCAAGATCATATGGGATTAATAATGGAATGAGATATTGGCTTTCAGAAAGTCACGGAAGAACAAAGATGTCACTAACTAAGGCTGATGAGAATTTATCTGCCTCACTATTGAACATTACTGCTCTTGAAAAGTCTCTGTCTGCTGCTGACGTGAAGTACAAGTTCATGCAAGAGCTTCGCGACTTTGTCTCTACCATATGTGACTTTTTGCAGGATAAGGCTCCCTTGATAGAGGAGCTTGAAGAGGAAATGCAGAAGCAACGTGATGAACGTGCATCAGCTATTTTTGAAAGAAGAATTGCTGATAACGATGATGAAATGATGGAAGTAGAAGCAGCTGTAAATGCAGCAATGTCTATTTTCAGTAAAGAAGGTACCAGTGCTGAAATAATTGCAGTTGCTAAAAGTGCAGCACAGGCTGCTTCTGCTGCTGTGAGAGAACAAACAAATTTACCAGTCAAGCTAGATGAATTTGGTAGAGATATGAACCTTAAGAAACGTATGGATATGAAAGGCAGGGCTGAGGCTCGTCAACGCAGGAGAAAAAGGTATGAAGCTAAGAGAGAGTCATCCATGGATGTGGACAGTCCTAATCGGACGGTTGAAGGAGAATCAAGCACCGATGAGAGTGACAGTGAGAGTAAAGAGTACGAGTCACACCGCCAGTTGGTGCTTGGGACTGCTGATCAAGTTTTCAGTGATGCAGCCGAGGAATATTCGCAACTTTCAGCTGTCAAAGAAAGGTTTGAAGAATGGAAGAGAGAGTATCGATCCAGCTACCGTGATGCTTACATGTCATTGAGTGTTCCTGTTATATTCTCTCCGTACGTAAGGCTGGAGCTCTTGAAGTGGGACCCTCTCCGTGAGAACACAGATTTTGTAAATATGAGCTGGCATTTATTATTAGAGAATTACGGTTTACCGGAGGATGGTTCAGATTTTGCATCTGATGATGCTGATGCTAACCTTATCCCTGCATTGGTGGAAAAGGTTGCATTACCCATTTTGCATCATCAAATTGTTCACTGCTGGGATATTCTCAGTACAAGAGAAACAAAGAATGCAGTTGCTGCCACGAGCTTGGTAACAGATTATGTCTCTTCCAGTGAGGCTCTTGAAGATTTATTAGTTGCTATTCACACCCGTCTGGCAGATGCTGTCTCAAAACTTACGGTCCCAGCATGGAGCCCTCTTGTATTGAAAGCAGTACCAAATGCTGCAAGAATTGCAGCATATCGATTTGGCATGTCTGTTCGTTTGATGAAAAATATCTGCTTGTGGAAAGAAGTACTTGCTTTGCCAGTTTTAGAGAAGCTTGCAATTAATGAGCTTTTGTGTGGCAAAGTTCTACCTCACATTCGAAGCATTGCTGCCAATGTTAATGATGCAGTTACAAGAACTGAAAGGATTATTGCTTCTCTATCAGGGGTGTGGTCAGGTTCAGATGTCACAGGAGACCGTAGTCGCAAGTTGCAATCACTGGTGGATTATGTGCTGACGCTGGGAAAGACTATAGAGAAGAAGCATTGGCTGGGTGTGACACAAAGTGAAACTGGTGGACTGGCTCGTAGATTGAAGAAGATGCTGGTTGAGCTCAACGAGTATGACAAGGCCAGGGACGTAGCTAGGACCTTCCATCTTAAAGAGGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000375 GO:0000377 GO:0000398 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0022402 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045182 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCFC NTR2

Protein Analysis

968

Amino Acids

107.35

Weight (kDa)

5.37

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTR2	PF15458	118 - 341	3.1e-13	Nineteen complex-related protein 2
GCFC	PF07842	659 - 862	3.6e-30	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08550
fragaria_vesca	FvH4_4g28100 FvH4_4g28100 FvH4_4g28100 FvH4_4g28100 FvH4_4g28100
malus_domestica	MD13G1046700.v1.1 MD16G1048400.v1.1
prunus_persica	Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1
pyrus_communis	pycom13g04090 pycom16g04230
rosa_chinensis	RchiOBHm_Chr4g0435851
rosa_laevigata	RLG00000006554
rosa_multiflora	Rmu_sc0002642.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377030
rosa_rugosa	Rorug04G0290000
rosa_samantha	Rh4AG344300 Rh4BG353200 Rh4CG367600 Rh4DG347100
rosa_wichuraiana	Rw4G030080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1625
AccB1I	GGYRCC	1 cut(s)	1625
AccBSI	CCGCTC	1 cut(s)	643
AccII	CGCG	5 cut(s)	225, 394, 668, 710, 1431
AccIII	TCCGGA	1 cut(s)	648
AclWI	GGATC	2 cut(s)	584, 2016
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	5 cut(s)	298, 1199, 1342, 1699, 1721
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	2798
AfaI	GTAC	8 cut(s)	1179, 1409, 1627, 1901, 2078, 2296, 2460, 2541
AfiI	CCNNNNNNNGG	5 cut(s)	347, 464, 1918, 2180, 2230
AflII	CTTAAG	2 cut(s)	1172, 1742
AflIII	ACRYGT	1 cut(s)	2043
AhdI	GACNNNNNGTC	1 cut(s)	232
AjiI	CACGTC	1 cut(s)	1402
AjnI	CCWGG	2 cut(s)	1057, 2864
AjuI	GAANNNNNNNTTGG	2 cut(s)	1270, 1302
Alw21I	GWGCWC	3 cut(s)	8, 2094, 2847
Alw26I	GTCTC	7 cut(s)	210, 316, 1389, 1444, 2353, 2416, 2700
AlwI	GGATC	2 cut(s)	584, 2016
AlwNI	CAGNNNCTG	3 cut(s)	1054, 2321, 2408
Aor13HI	TCCGGA	1 cut(s)	648
AoxI	GGCC	3 cut(s)	276, 480, 2862
ApoI	RAATTY	5 cut(s)	298, 1199, 1342, 1699, 1721
ArsI	GACNNNNNNTTYG	2 cut(s)	1097, 1129
AseI	ATTAAT	2 cut(s)	1269, 2574
Asp700I	GAANNNNTTC	1 cut(s)	624
Asp718I	GGTACC	1 cut(s)	1625
AspLEI	GCGC	3 cut(s)	225, 670, 710
AspS9I	GGNCC	4 cut(s)	286, 2104, 2425, 2880
AsuHPI	GGTGA	1 cut(s)	307
AsuII	TTCGAA	2 cut(s)	1103, 2611
AvaII	GGWCC	4 cut(s)	286, 2104, 2425, 2880
BanI	GGYRCC	1 cut(s)	1625
BanII	GRGCYC	5 cut(s)	8, 429, 2094, 2441, 2847
BauI	CACGAG	1 cut(s)	2326
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	3 cut(s)	8, 2094, 2847
BbvCI	CCTCAGC	3 cut(s)	170, 259, 1773
BccI	CCATC	5 cut(s)	769, 944, 1567, 2174, 2895
BceAI	ACGGC	4 cut(s)	187, 291, 467, 721
BcgI	CGANNNNNNTGC	2 cut(s)	1409, 1443
BciT130I	CCWGG	2 cut(s)	1059, 2866
BciVI	GTATCC	1 cut(s)	609
BclI	TGATCA	2 cut(s)	604, 1936
BcoDI	GTCTC	7 cut(s)	210, 316, 1389, 1444, 2353, 2416, 2700
BfaI	CTAG	6 cut(s)	401, 957, 975, 984, 1715, 2877
BfmI	CTRYAG	1 cut(s)	2763
BfrI	CTTAAG	2 cut(s)	1172, 1742
BfuI	GTATCC	1 cut(s)	609
BmcAI	AGTACT	1 cut(s)	2541
Bme1390I	CCNGG	2 cut(s)	1059, 2866
Bme18I	GGWCC	4 cut(s)	286, 2104, 2425, 2880
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	1402
BmgT120I	GGNCC	4 cut(s)	286, 2104, 2425, 2880
BmrFI	CCNGG	2 cut(s)	1059, 2866
BoxI	GACNNNNGTC	1 cut(s)	2712
BpiI	GAAGAC	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	491, 523
BpmI	CTGGAG	2 cut(s)	394, 2108
Bpu10I	CCTNAGC	3 cut(s)	170, 259, 1773
Bpu14I	TTCGAA	2 cut(s)	1103, 2611
BpuEI	CTTGAG	1 cut(s)	425
Bsa29I	ATCGAT	2 cut(s)	2020, 2488
BsaAI	YACGTR	1 cut(s)	2080
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	2700
BsaJI	CCNNGG	8 cut(s)	282, 360, 477, 570, 1008, 1824, 1959, 2865
BsaWI	WCCGGW	2 cut(s)	648, 2173
BsaXI	ACNNNNNCTCC	2 cut(s)	725, 755
Bsc4I	CCNNNNNNNGG	5 cut(s)	347, 464, 1918, 2180, 2230
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	8 cut(s)	1629, 1706, 1915, 2355, 2552, 2736, 2809, 2817
Bse3DI	GCAATG	3 cut(s)	765, 1608, 2616
BseAI	TCCGGA	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	1059, 2866
BseCI	ATCGAT	2 cut(s)	2020, 2488
BseDI	CCNNGG	8 cut(s)	282, 360, 477, 570, 1008, 1824, 1959, 2865
BseGI	GGATG	6 cut(s)	811, 892, 952, 1820, 1834, 2185
BseLI	CCNNNNNNNGG	5 cut(s)	347, 464, 1918, 2180, 2230
BseMI	GCAATG	3 cut(s)	765, 1608, 2616
BseMII	CTCAG	6 cut(s)	161, 184, 273, 1154, 1764, 2305
BseNI	ACTGG	8 cut(s)	1629, 1706, 1915, 2355, 2552, 2736, 2809, 2817
BseRI	GAGGAG	8 cut(s)	158, 202, 205, 247, 295, 746, 1012, 1499
BseX3I	CGGCCG	1 cut(s)	276
BseYI	CCCAGC	5 cut(s)	1031, 2280, 2428, 2752, 2782
BsgI	GTGCAG	1 cut(s)	1680
Bsh1236I	CGCG	5 cut(s)	225, 394, 668, 710, 1431
Bsh1285I	CGRYCG	2 cut(s)	279, 474
BshFI	GGCC	3 cut(s)	278, 482, 2864
BshNI	GGYRCC	1 cut(s)	1625
BshVI	ATCGAT	2 cut(s)	2020, 2488
BsiEI	CGRYCG	2 cut(s)	279, 474
BsiHKAI	GWGCWC	3 cut(s)	8, 2094, 2847
BsiSI	CCGG	5 cut(s)	465, 649, 671, 737, 2174
BsiWI	CGTACG	1 cut(s)	2076
BslFI	GGGAC	4 cut(s)	1942, 2117, 2411, 2882
BslI	CCNNNNNNNGG	5 cut(s)	347, 464, 1918, 2180, 2230
BsmAI	GTCTC	7 cut(s)	210, 316, 1389, 1444, 2353, 2416, 2700
BsmBI	CGTCTC	2 cut(s)	210, 316
BsmFI	GGGAC	4 cut(s)	1942, 2117, 2411, 2882
BsmI	GAATGC	3 cut(s)	1111, 1214, 2317
BsnI	GGCC	3 cut(s)	278, 482, 2864
Bso31I	GGTCTC	1 cut(s)	2700
Bsp119I	TTCGAA	2 cut(s)	1103, 2611
Bsp1286I	GDGCHC	5 cut(s)	8, 429, 2094, 2441, 2847
Bsp13I	TCCGGA	1 cut(s)	648
Bsp143I	GATC	6 cut(s)	471, 576, 604, 1256, 1936, 2021
Bsp19I	CCATGG	2 cut(s)	570, 1824
Bsp68I	TCGCGA	1 cut(s)	1431
BspANI	GGCC	3 cut(s)	278, 482, 2864
BspCNI	CTCAG	6 cut(s)	160, 183, 272, 1153, 1765, 2304
BspDI	ATCGAT	2 cut(s)	2020, 2488
BspEI	TCCGGA	1 cut(s)	648
BspFNI	CGCG	5 cut(s)	225, 394, 668, 710, 1431
BspPI	GGATC	2 cut(s)	584, 2016
BspQI	GCTCTTC	2 cut(s)	906, 1194
BspT104I	TTCGAA	2 cut(s)	1103, 2611
BspT107I	GGYRCC	1 cut(s)	1625
BspTI	CTTAAG	2 cut(s)	1172, 1742
BspTNI	GGTCTC	1 cut(s)	2700
BsrBI	CCGCTC	1 cut(s)	643
BsrDI	GCAATG	3 cut(s)	765, 1608, 2616
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	8 cut(s)	1629, 1706, 1915, 2355, 2552, 2736, 2809, 2817
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	8 cut(s)	282, 360, 477, 570, 1008, 1824, 1959, 2865
BssMI	GATC	6 cut(s)	471, 576, 604, 1256, 1936, 2021
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	2326
BssT1I	CCWWGG	5 cut(s)	282, 360, 570, 1008, 1824
Bst2BI	CACGAG	1 cut(s)	2326
Bst2UI	CCWGG	2 cut(s)	1059, 2866
Bst4CI	ACNGT	8 cut(s)	290, 1838, 1852, 1886, 2033, 2168, 2425, 2711
Bst6I	CTCTTC	9 cut(s)	319, 327, 888, 906, 932, 1194, 1488, 2003, 2356
BstACI	GRCGYC	1 cut(s)	60
BstAFI	CTTAAG	2 cut(s)	1172, 1742
BstAPI	GCANNNNNTGC	3 cut(s)	1670, 2321, 2477
BstBAI	YACGTR	1 cut(s)	2080
BstBI	TTCGAA	2 cut(s)	1103, 2611
BstC8I	GCNNGC	8 cut(s)	406, 459, 466, 663, 1128, 1214, 2144, 2568
BstDEI	CTNAG	8 cut(s)	147, 170, 259, 1140, 1329, 1773, 1809, 2291
BstDSI	CCRYGG	2 cut(s)	570, 1824
BstF5I	GGATG	6 cut(s)	811, 892, 952, 1820, 1834, 2185
BstFNI	CGCG	5 cut(s)	225, 394, 668, 710, 1431
BstHHI	GCGC	3 cut(s)	225, 670, 710
BstKTI	GATC	6 cut(s)	474, 579, 607, 1259, 1939, 2024
BstMAI	GTCTC	7 cut(s)	210, 316, 1389, 1444, 2353, 2416, 2700
BstMBI	GATC	6 cut(s)	471, 576, 604, 1256, 1936, 2021
BstMCI	CGRYCG	2 cut(s)	279, 474
BstNI	CCWGG	2 cut(s)	1059, 2866
BstNSI	RCATGY	2 cut(s)	2047, 2500
BstPAI	GACNNNNGTC	1 cut(s)	2712
BstSCI	CCNGG	2 cut(s)	1057, 2864
BstSFI	CTRYAG	1 cut(s)	2763
BstSNI	TACGTA	1 cut(s)	2080
BstUI	CGCG	5 cut(s)	225, 394, 668, 710, 1431
BstV2I	GAAGAC	1 cut(s)	228
BstXI	CCANNNNNNTGG	3 cut(s)	502, 1831, 2332
BstZI	CGGCCG	1 cut(s)	276
Bsu15I	ATCGAT	2 cut(s)	2020, 2488
BsuI	GTATCC	1 cut(s)	609
BsuRI	GGCC	3 cut(s)	278, 482, 2864
BsuTUI	ATCGAT	2 cut(s)	2020, 2488
BtgI	CCRYGG	2 cut(s)	570, 1824
BtrI	CACGTC	1 cut(s)	1402
BtsCI	GGATG	6 cut(s)	811, 892, 952, 1820, 1834, 2185
BtsI	GCAGTG	1 cut(s)	2275
BtsIMutI	CAGTG	6 cut(s)	1636, 1891, 1954, 2275, 2362, 2729
BtuMI	TCGCGA	1 cut(s)	1431
Cac8I	GCNNGC	8 cut(s)	406, 459, 466, 663, 1128, 1214, 2144, 2568
CaiI	CAGNNNCTG	3 cut(s)	1054, 2321, 2408
CfoI	GCGC	3 cut(s)	225, 670, 710
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	4 cut(s)	286, 2104, 2425, 2880
ClaI	ATCGAT	2 cut(s)	2020, 2488
CseI	GACGC	2 cut(s)	68, 2758
Csp6I	GTAC	8 cut(s)	1178, 1408, 1626, 1900, 2077, 2295, 2459, 2540
CviAII	CATG	6 cut(s)	571, 1417, 1825, 2044, 2433, 2497
CviQI	GTAC	8 cut(s)	1178, 1408, 1626, 1900, 2077, 2295, 2459, 2540
DdeI	CTNAG	8 cut(s)	147, 170, 259, 1140, 1329, 1773, 1809, 2291
DpnI	GATC	6 cut(s)	473, 578, 606, 1258, 1938, 2023
DpnII	GATC	6 cut(s)	471, 576, 604, 1256, 1936, 2021
DraIII	CACNNNGTG	1 cut(s)	2798
DriI	GACNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	276
EagI	CGGCCG	1 cut(s)	276
Eam1104I	CTCTTC	9 cut(s)	319, 327, 888, 906, 932, 1194, 1488, 2003, 2356
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	9 cut(s)	319, 327, 888, 906, 932, 1194, 1488, 2003, 2356
EciI	GGCGGA	6 cut(s)	17, 106, 112, 118, 409, 728
Ecl136II	GAGCTC	3 cut(s)	6, 2092, 2845
EclXI	CGGCCG	1 cut(s)	276
Eco105I	TACGTA	1 cut(s)	2080
Eco130I	CCWWGG	5 cut(s)	282, 360, 570, 1008, 1824
Eco24I	GRGCYC	5 cut(s)	8, 429, 2094, 2441, 2847
Eco31I	GGTCTC	1 cut(s)	2700
Eco47I	GGWCC	4 cut(s)	286, 2104, 2425, 2880
Eco52I	CGGCCG	1 cut(s)	276
Eco53kI	GAGCTC	3 cut(s)	6, 2092, 2845
Eco57I	CTGAAG	1 cut(s)	365
EcoICRI	GAGCTC	3 cut(s)	6, 2092, 2845
EcoO109I	RGGNCCY	2 cut(s)	2104, 2880
EcoRI	GAATTC	1 cut(s)	298
EcoRII	CCWGG	2 cut(s)	1057, 2864
EcoT14I	CCWWGG	5 cut(s)	282, 360, 570, 1008, 1824
EcoT38I	GRGCYC	5 cut(s)	8, 429, 2094, 2441, 2847
ErhI	CCWWGG	5 cut(s)	282, 360, 570, 1008, 1824
Esp3I	CGTCTC	2 cut(s)	210, 316
FaeI	CATG	6 cut(s)	574, 1420, 1828, 2047, 2436, 2500
FalI	AAGNNNNNCTT	4 cut(s)	1460, 1492, 2526, 2558
FaqI	GGGAC	4 cut(s)	1942, 2117, 2411, 2882
FatI	CATG	6 cut(s)	570, 1416, 1824, 2043, 2432, 2496
FauI	CCCGC	2 cut(s)	466, 670
FauNDI	CATATG	3 cut(s)	1234, 1261, 1448
FbaI	TGATCA	2 cut(s)	604, 1936
FokI	GGATG	6 cut(s)	818, 899, 959, 1807, 1841, 2192
FriOI	GRGCYC	5 cut(s)	8, 429, 2094, 2441, 2847
FspBI	CTAG	6 cut(s)	401, 957, 975, 984, 1715, 2877
GlaI	GCGC	3 cut(s)	224, 669, 709
GsaI	CCCAGC	5 cut(s)	1035, 2284, 2432, 2756, 2786
GsuI	CTGGAG	2 cut(s)	394, 2108
HaeIII	GGCC	3 cut(s)	278, 482, 2864
HapII	CCGG	5 cut(s)	465, 649, 671, 737, 2174
HgaI	GACGC	2 cut(s)	68, 2758
HhaI	GCGC	3 cut(s)	225, 670, 710
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	6 cut(s)	574, 1420, 1828, 2047, 2436, 2500
Hin6I	GCGC	3 cut(s)	223, 668, 708
HinP1I	GCGC	3 cut(s)	223, 668, 708
HincII	GTYRAC	1 cut(s)	1784
HindII	GTYRAC	1 cut(s)	1784
HindIII	AAGCTT	3 cut(s)	1146, 1169, 2564
HinfI	GANTC	7 cut(s)	506, 554, 689, 1051, 1817, 1862, 1904
HpaII	CCGG	5 cut(s)	465, 649, 671, 737, 2174
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	6 cut(s)	487, 1784, 1834, 2171, 2275, 2810
Hpy188III	TCNNGA	8 cut(s)	411, 558, 602, 649, 1376, 1430, 2095, 2366
Hpy8I	GTNNAC	6 cut(s)	487, 1784, 1834, 2171, 2275, 2810
Hpy99I	CGWCG	7 cut(s)	44, 47, 50, 62, 185, 188, 521
HpyAV	CCTTC	5 cut(s)	81, 121, 1616, 1850, 2893
HpyCH4III	ACNGT	8 cut(s)	290, 1838, 1852, 1886, 2033, 2168, 2425, 2711
HpyCH4IV	ACGT	6 cut(s)	1401, 1513, 1522, 1750, 2079, 2871
HpyF3I	CTNAG	8 cut(s)	147, 170, 259, 1140, 1329, 1773, 1809, 2291
HpySE526I	ACGT	6 cut(s)	1401, 1513, 1522, 1750, 2079, 2871
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	6 cut(s)	574, 1420, 1828, 2047, 2436, 2500
HspAI	GCGC	3 cut(s)	223, 668, 708
KflI	GGGWCCC	1 cut(s)	2104
Kpn2I	TCCGGA	1 cut(s)	648
KpnI	GGTACC	1 cut(s)	1629
KroI	GCCGGC	1 cut(s)	464
KroNI	GCCGGC	1 cut(s)	466
Ksp22I	TGATCA	2 cut(s)	604, 1936
Kzo9I	GATC	6 cut(s)	471, 576, 604, 1256, 1936, 2021
LguI	GCTCTTC	2 cut(s)	906, 1194
MaeI	CTAG	6 cut(s)	401, 957, 975, 984, 1715, 2877
MaeII	ACGT	6 cut(s)	1401, 1513, 1522, 1750, 2079, 2871
MalI	GATC	6 cut(s)	473, 578, 606, 1258, 1938, 2023
MbiI	CCGCTC	1 cut(s)	643
MboI	GATC	6 cut(s)	471, 576, 604, 1256, 1936, 2021
MhlI	GDGCHC	5 cut(s)	8, 429, 2094, 2441, 2847
MlyI	GAGTC	5 cut(s)	500, 563, 1045, 1826, 1913
MmeI	TCCRAC	1 cut(s)	573
MroI	TCCGGA	1 cut(s)	648
MroNI	GCCGGC	1 cut(s)	464
MroXI	GAANNNNTTC	1 cut(s)	624
MseI	TTAA	7 cut(s)	453, 1173, 1269, 1743, 2574, 2631, 2892
MslI	CAYNNNNRTG	1 cut(s)	1829
MspA1I	CMGCKG	2 cut(s)	1589, 1982
MspCI	CTTAAG	2 cut(s)	1172, 1742
MspI	CCGG	5 cut(s)	465, 649, 671, 737, 2174
MspR9I	CCNGG	2 cut(s)	1059, 2866
Mva1269I	GAATGC	3 cut(s)	1111, 1214, 2317
MvaI	CCWGG	2 cut(s)	1059, 2866
MvnI	CGCG	5 cut(s)	225, 394, 668, 710, 1431
NaeI	GCCGGC	1 cut(s)	466
NcoI	CCATGG	2 cut(s)	570, 1824
NdeI	CATATG	3 cut(s)	1234, 1261, 1448
NdeII	GATC	6 cut(s)	471, 576, 604, 1256, 1936, 2021
NgoMIV	GCCGGC	1 cut(s)	464
NlaIII	CATG	6 cut(s)	574, 1420, 1828, 2047, 2436, 2500
NmeAIII	GCCGAG	4 cut(s)	448, 502, 577, 1984
NmuCI	GTSAC	8 cut(s)	555, 1301, 1320, 1451, 1880, 1905, 2698, 2788
NruI	TCGCGA	1 cut(s)	1431
NspI	RCATGY	2 cut(s)	2047, 2500
NspV	TTCGAA	2 cut(s)	1103, 2611
PciI	ACATGT	1 cut(s)	2043
PciSI	GCTCTTC	2 cut(s)	906, 1194
PcsI	WCGNNNNNNNCGW	5 cut(s)	45, 54, 183, 480, 1519
PctI	GAATGC	3 cut(s)	1111, 1214, 2317
PdiI	GCCGGC	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	2 cut(s)	689, 1862
Pfl23II	CGTACG	1 cut(s)	2076
PflFI	GACNNNGTC	1 cut(s)	1436
Ple19I	CGATCG	1 cut(s)	474
PleI	GAGTC	5 cut(s)	500, 562, 1045, 1825, 1912
PpsI	GAGTC	5 cut(s)	500, 562, 1045, 1825, 1912
Ppu21I	YACGTR	1 cut(s)	2080
PpuMI	RGGWCCY	2 cut(s)	2104, 2880
PscI	ACATGT	1 cut(s)	2043
PshAI	GACNNNNGTC	1 cut(s)	2712
PshBI	ATTAAT	2 cut(s)	1269, 2574
Psp124BI	GAGCTC	3 cut(s)	8, 2094, 2847
Psp5II	RGGWCCY	2 cut(s)	2104, 2880
Psp6I	CCWGG	2 cut(s)	1057, 2864
PspFI	CCCAGC	5 cut(s)	1031, 2280, 2428, 2752, 2782
PspGI	CCWGG	2 cut(s)	1057, 2864
PspLI	CGTACG	1 cut(s)	2076
PspPI	GGNCC	4 cut(s)	286, 2104, 2425, 2880
PspPPI	RGGWCCY	2 cut(s)	2104, 2880
PstNI	CAGNNNCTG	3 cut(s)	1054, 2321, 2408
PsyI	GACNNNGTC	1 cut(s)	1436
PvuI	CGATCG	1 cut(s)	474
PvuII	CAGCTG	2 cut(s)	1589, 1982
RruI	TCGCGA	1 cut(s)	1431
RsaI	GTAC	8 cut(s)	1179, 1409, 1627, 1901, 2078, 2296, 2460, 2541
RsaNI	GTAC	8 cut(s)	1178, 1408, 1626, 1900, 2077, 2295, 2459, 2540
RseI	CAYNNNNRTG	1 cut(s)	1829
SacI	GAGCTC	3 cut(s)	8, 2094, 2847
SapI	GCTCTTC	2 cut(s)	906, 1194
SaqAI	TTAA	7 cut(s)	453, 1173, 1269, 1743, 2574, 2631, 2892
Sau3AI	GATC	6 cut(s)	471, 576, 604, 1256, 1936, 2021
Sau96I	GGNCC	4 cut(s)	286, 2104, 2425, 2880
ScaI	AGTACT	1 cut(s)	2541
SchI	GAGTC	5 cut(s)	500, 563, 1045, 1826, 1913
ScrFI	CCNGG	2 cut(s)	1059, 2866
SduI	GDGCHC	5 cut(s)	8, 429, 2094, 2441, 2847
SfcI	CTRYAG	1 cut(s)	2763
SfuI	TTCGAA	2 cut(s)	1103, 2611
SinI	GGWCC	4 cut(s)	286, 2104, 2425, 2880
SmiMI	CAYNNNNRTG	1 cut(s)	1829
SmlI	CTYRAG	3 cut(s)	440, 1172, 1742
SmoI	CTYRAG	3 cut(s)	440, 1172, 1742
SnaBI	TACGTA	1 cut(s)	2080
SspI	AATATT	1 cut(s)	1967
SspMI	CTAG	6 cut(s)	401, 957, 975, 984, 1715, 2877
SstI	GAGCTC	3 cut(s)	8, 2094, 2847
StyD4I	CCNGG	2 cut(s)	1057, 2864
StyI	CCWWGG	5 cut(s)	282, 360, 570, 1008, 1824
TaaI	ACNGT	8 cut(s)	290, 1838, 1852, 1886, 2033, 2168, 2425, 2711
TaiI	ACGT	6 cut(s)	1404, 1516, 1525, 1753, 2082, 2874
TaqI	TCGA	9 cut(s)	39, 470, 579, 861, 1067, 1103, 2020, 2488, 2611
TatI	WGTACW	3 cut(s)	1407, 2294, 2539
TauI	GCSGC	7 cut(s)	33, 36, 281, 464, 646, 668, 713
TfiI	GAWTC	2 cut(s)	689, 1862
Tru1I	TTAA	7 cut(s)	453, 1173, 1269, 1743, 2574, 2631, 2892
Tru9I	TTAA	7 cut(s)	453, 1173, 1269, 1743, 2574, 2631, 2892
TscAI	CASTG	6 cut(s)	1636, 1891, 1954, 2282, 2362, 2736
TseFI	GTSAC	8 cut(s)	555, 1301, 1320, 1451, 1880, 1905, 2698, 2788
Tsp45I	GTSAC	8 cut(s)	555, 1301, 1320, 1451, 1880, 1905, 2698, 2788
TspGWI	ACGGA	6 cut(s)	298, 362, 504, 1320, 2064, 2102
TspRI	CASTG	6 cut(s)	1636, 1891, 1954, 2282, 2362, 2736
Tth111I	GACNNNGTC	1 cut(s)	1436
Vha464I	CTTAAG	2 cut(s)	1172, 1742
VpaK11BI	GGWCC	4 cut(s)	286, 2104, 2425, 2880
VspI	ATTAAT	2 cut(s)	1269, 2574
XapI	RAATTY	5 cut(s)	298, 1199, 1342, 1699, 1721
XceI	RCATGY	2 cut(s)	2047, 2500
XcmI	CCANNNNNNNNNTGG	3 cut(s)	289, 344, 1922
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	6 cut(s)	401, 957, 975, 984, 1715, 2877
ZrmI	AGTACT	1 cut(s)	2541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.