Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007740

Physical Location & Seq

Genomic Coordinates Reverse (-)

8421961 .. 8429054

Gene Structure 7094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006554

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2775 bp

ATGAGCTCCGCCAGAGCCAAGAACTTCCGCCGCCGCATCGACGACGACGACGACGACGACGCCGATACCCCTTCAACCACCTCCACTCTCAAATCCCTATCAAAACCCTCCTCCTCCGCCAAGCCCAAGAAGCCTCAGAACCAAGCCCCCAAGCTCCTCAGCTTTGCCGACGACGAAGAAAACGCCACGCCGTCTCGCTCCTCCAAGCGCGACAAGTCTTCTTCTCGCCTCGCCAAGCCCTCCTCAGCTCACAAGCTCACGGCCGCCAAGGACCGTTTGGTAAATTCATCCTCCTCCGTCTCTTCTTCTCTTCCCTCCAATGTCCAGCCCCAAGCTGGAACTTACACCAAGGAAGCCCTCCGTGAGCTTCAGAAGAACACGCGAACCCTAGCCAGCTCTAGACCCTCCGCCGCCGCCGAGCCCACCATTGTTCTCAAGGGCTTGATTAAGCCCGCCGCCGGCTCGATCGCCGAGGCCGTGAACGGAGCCAGAGAGCTGGACTCCGATGACGACGAAGTGCAAGGGAACAAGGATAGGGTTGATGCTGAGTCACGATTGGCTTCCATGGGGATCGACAAGGATAGGTCGGAGTATCCTGATCAAGCCACCATAGAAGCCATTCGGAAGAAAAGGGAGCGGCTCCGGAAGTCCAAGCCCGCCGCGCCGGATTTCATTTCATTGGATTCGGGGAGTAATCACGGCGCGGCGGAGGGGTTGAGTGATGAGGAGCCGGAGTTTAGGAACCGAATTGCAATGTTTGGGGAGAAGATGGAGGGTAGTAAGAAAGGTGTGTTTGAGGATGTTGATGATAGGGAAGGGGATGGAGGTGGATTGAGAAAAGAGAGCGTAGTAGTCGAAGATGATGATGAGGATGAAGAAGAGAAGATTTGGGAGGAAGAGCAGTTTAGGAAAGGGTTGGGGAAGAGAGTGGATGATGGGTCTAGTATAGGGGTTAGTGCTAGTGTTCCTAGAGTTCATAGTGTGCCACAGCCCAAGGCTACTTACTCCGCCGCAATCGCTGGGTATAGTTTGGCACAGACTCTGCCTGGTGTGTCGAGTATAGGAGGGGCAACAGGAGCATCACAAGGTTCGAATGCTATGTCCATAAATGAGCAAGCTGAAATTGCTCAGAAAGCTTTGCAGGAAAATGTGAAGAAGCTTAAGGAAAGTCACGGAAGAACAAAGATGTCACTAACAAAGGCTGATGAGAATTTATCTGCCTCACTATTGAACATTACTGCTCTTGAAAAGTCTCTGTCTGCGGCTGACGTGAAGTACAAGTTCATGCAAGAGCTTCGCGACTTTGTCTCTACCATATGTGACTTTTTGCAGGATAAGGCTCCCTTGATAGAGGAGCTTGAAGAGGAAATGCAGAAGCAACGTGATGAACGTGCATCAGCTATTTTTGAAAGAAGAATTGCTGATAACAATGATGAAATGATGGAAGTAGAAGCAGCTGTAAATGCAGCAATGTCTATTTTCAGTAAAGAAGGTACCGGTGCTGAAATAATTGCAGTTGCTAAAAGTGCAGCACAGGCTGCTTCTGCTGCTGTGAGAGAACAAACTAATTTACCAGTCAAGCTAGATGAATTTGGTAGAGATATGAACCTTAAGAAACGTATGGATATGAAAGGCAGGGCCGAGGCTCGTCAACGCAGGAGAAAAAGGTATGAAGCTAAGAGAGAGTCATCCATGGATGTGGACAGTCCTAATCGGACGGTTGAAGGAGAATCAAGCACCGATGAGAGTGACAGTGAGAGTAAAGAGTACGAGTCACACCGCCAGTTGGTGCTTGGGACTGCTGATCAAGTTTTCAGTGATGCAGCCGAGGAATATTCACAACTTTCAGCTGTCAAAGAAAGGTTTGAAGAATGGAAGAGAGAGTATCGATCCAGCTACCATGATGCTTACATGTCATTGAGTGTTCCTGTTATATTCTCTCCGTACGTAAGGCTGGAGCTCTTGAAGTGGGACCCTCTCCGTGAGAACACAGATTTTGTAAATATGAGCTGGCATTTATTATTAGAGAATTATGGTTTACCGGAGGATGGTTCAAATTTTGCATCTGATGATGCTGATGCTAACCTTATCCCTGCATTGGTGGAAAAGGTTGCATTACCCATTTTGCATCATCAAATTGTTCACTGCTGGGATATTCTCAGTACAAGAGAAACAAAGAATGCAGTTGCTGCCACAAGCTTGGTAACGGATTATGTCTCTTCCAGTGAGGCTCTTGAAGATTTATTAGTTGCTATTCACACCCGTCTGGCAGATGCTGTCTCAAAACTTACGGTCCCAACATGGAGCCCTCTTGTATTGAAAGCAGTACCAAATGCTGCAAGAATTGCAGCATATCGATTTGGCATGTCTGTTCGTTTGATGAAAAATATCTGCTTGTGGAAAGAAGTACTTGCTTTGCCAGTTCTAGAGAAGCTTGCTATTAATGAGCTTTTGTGTGGCAAAGTTCTACCTCACATTCGAAGCATTGCTGCCAATGTTAATGATGCAGTTACAAGAACTGAAAGGATTATTGCTTCTCTATCAGGGGTGTGGTCGGGTTCAGATGTCACAGGAGACCGTAGCCACAAGTTGCAATCACTGGTGGATTATGTGCTGACGCTGGGAAAGACTATAGAGAAGAAGCATTCGCTGGGTGTGACACAAAGTGAAACTGGTGGACTGGCTCGTAGATTGAAGAAGATGCTGGTTGAGCTCAACGAGTATGACAAGGCTAGGGAAGTAGCTAGGACCTTCCATCTTAAAGAGGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000375 GO:0000377 GO:0000398 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0022402 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045182 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCFC NTR2

Protein Analysis

925

Amino Acids

101.77

Weight (kDa)

5.55

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCFC	PF07842	615 - 818	5.9e-30	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08550
fragaria_vesca	FvH4_4g28100 FvH4_4g28100 FvH4_4g28100 FvH4_4g28100 FvH4_4g28100
malus_domestica	MD13G1046700.v1.1 MD16G1048400.v1.1
prunus_persica	Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1 Prupe.1G305200_v2.0.a1
pyrus_communis	pycom13g04090 pycom16g04230
rosa_chinensis	RchiOBHm_Chr4g0435851
rosa_laevigata	RLG00000006554
rosa_multiflora	Rmu_sc0002642.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377030
rosa_rugosa	Rorug04G0290000
rosa_samantha	Rh4AG344300 Rh4BG353200 Rh4CG367600 Rh4DG347100
rosa_wichuraiana	Rw4G030080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1493
AccB1I	GGYRCC	1 cut(s)	1493
AccBSI	CCGCTC	1 cut(s)	637
AccII	CGCG	5 cut(s)	210, 382, 662, 704, 1299
AccIII	TCCGGA	1 cut(s)	642
AclWI	GGATC	2 cut(s)	578, 1884
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	4 cut(s)	283, 1210, 1589, 2056
AcuI	CTGAAG	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	2666
AfaI	GTAC	7 cut(s)	1277, 1495, 1769, 1946, 2164, 2328, 2409
AfiI	CCNNNNNNNGG	5 cut(s)	335, 458, 1786, 2048, 2098
AflII	CTTAAG	2 cut(s)	1160, 1610
AflIII	ACRYGT	1 cut(s)	1911
AgeI	ACCGGT	1 cut(s)	1496
AjiI	CACGTC	1 cut(s)	1270
AjnI	CCWGG	1 cut(s)	1045
Alw21I	GWGCWC	3 cut(s)	8, 1962, 2715
Alw26I	GTCTC	7 cut(s)	198, 304, 1257, 1312, 2221, 2284, 2568
AlwI	GGATC	2 cut(s)	578, 1884
AlwNI	CAGNNNCTG	3 cut(s)	1042, 2189, 2276
Aor13HI	TCCGGA	1 cut(s)	642
AoxI	GGCC	3 cut(s)	261, 474, 1638
ApoI	RAATTY	4 cut(s)	283, 1210, 1589, 2056
ArsI	GACNNNNNNTTYG	2 cut(s)	1085, 1117
AseI	ATTAAT	1 cut(s)	2442
AsiGI	ACCGGT	1 cut(s)	1496
Asp700I	GAANNNNTTC	1 cut(s)	618
Asp718I	GGTACC	1 cut(s)	1493
AspLEI	GCGC	3 cut(s)	210, 664, 704
AspS9I	GGNCC	5 cut(s)	271, 1638, 1972, 2293, 2748
AsuII	TTCGAA	2 cut(s)	1091, 2479
AvaII	GGWCC	4 cut(s)	271, 1972, 2293, 2748
BanI	GGYRCC	1 cut(s)	1493
BanII	GRGCYC	5 cut(s)	8, 423, 1962, 2309, 2715
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	3 cut(s)	8, 1962, 2715
BbvCI	CCTCAGC	2 cut(s)	158, 244
BccI	CCATC	6 cut(s)	763, 815, 929, 1435, 2042, 2763
BceAI	ACGGC	4 cut(s)	175, 276, 461, 715
BcgI	CGANNNNNNTGC	2 cut(s)	1277, 1311
BciT130I	CCWGG	1 cut(s)	1047
BciVI	GTATCC	1 cut(s)	603
BclI	TGATCA	2 cut(s)	598, 1804
BcoDI	GTCTC	7 cut(s)	198, 304, 1257, 1312, 2221, 2284, 2568
BfaI	CTAG	9 cut(s)	389, 399, 942, 960, 969, 1583, 2426, 2733, 2745
BfmI	CTRYAG	1 cut(s)	2631
BfrI	CTTAAG	2 cut(s)	1160, 1610
BfuI	GTATCC	1 cut(s)	603
BmcAI	AGTACT	1 cut(s)	2409
Bme1390I	CCNGG	1 cut(s)	1047
Bme18I	GGWCC	4 cut(s)	271, 1972, 2293, 2748
BmgBI	CACGTC	1 cut(s)	1270
BmgT120I	GGNCC	5 cut(s)	271, 1638, 1972, 2293, 2748
BmrFI	CCNGG	1 cut(s)	1047
BpiI	GAAGAC	1 cut(s)	210
BplI	GAGNNNNNCTC	2 cut(s)	485, 517
BpmI	CTGGAG	1 cut(s)	1976
Bpu10I	CCTNAGC	2 cut(s)	158, 244
Bpu14I	TTCGAA	2 cut(s)	1091, 2479
BpuEI	CTTGAG	1 cut(s)	419
Bsa29I	ATCGAT	2 cut(s)	1888, 2356
BsaAI	YACGTR	1 cut(s)	1948
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	2568
BsaJI	CCNNGG	8 cut(s)	267, 348, 471, 564, 993, 1641, 1692, 1827
BsaWI	WCCGGW	3 cut(s)	642, 1496, 2041
BsaXI	ACNNNNNCTCC	2 cut(s)	719, 749
Bsc4I	CCNNNNNNNGG	5 cut(s)	335, 458, 1786, 2048, 2098
Bse118I	RCCGGY	2 cut(s)	458, 1496
Bse1I	ACTGG	7 cut(s)	1574, 1783, 2223, 2420, 2604, 2677, 2685
Bse3DI	GCAATG	3 cut(s)	759, 1476, 2484
BseAI	TCCGGA	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	1047
BseCI	ATCGAT	2 cut(s)	1888, 2356
BseDI	CCNNGG	8 cut(s)	267, 348, 471, 564, 993, 1641, 1692, 1827
BseGI	GGATG	8 cut(s)	287, 805, 826, 877, 937, 1688, 1702, 2053
BseLI	CCNNNNNNNGG	5 cut(s)	335, 458, 1786, 2048, 2098
BseMI	GCAATG	3 cut(s)	759, 1476, 2484
BseMII	CTCAG	6 cut(s)	149, 172, 258, 537, 1142, 2173
BseNI	ACTGG	7 cut(s)	1574, 1783, 2223, 2420, 2604, 2677, 2685
BseRI	GAGGAG	8 cut(s)	100, 103, 146, 190, 232, 283, 740, 1367
BseX3I	CGGCCG	1 cut(s)	261
BseYI	CCCAGC	4 cut(s)	1019, 2148, 2620, 2650
BsgI	GTGCAG	1 cut(s)	1548
Bsh1236I	CGCG	5 cut(s)	210, 382, 662, 704, 1299
Bsh1285I	CGRYCG	2 cut(s)	264, 468
BshFI	GGCC	3 cut(s)	263, 476, 1640
BshNI	GGYRCC	1 cut(s)	1493
BshTI	ACCGGT	1 cut(s)	1496
BshVI	ATCGAT	2 cut(s)	1888, 2356
BsiEI	CGRYCG	2 cut(s)	264, 468
BsiHKAI	GWGCWC	3 cut(s)	8, 1962, 2715
BsiSI	CCGG	6 cut(s)	459, 643, 665, 731, 1497, 2042
BsiWI	CGTACG	1 cut(s)	1944
BslFI	GGGAC	3 cut(s)	1810, 1985, 2279
BslI	CCNNNNNNNGG	5 cut(s)	335, 458, 1786, 2048, 2098
BsmAI	GTCTC	7 cut(s)	198, 304, 1257, 1312, 2221, 2284, 2568
BsmBI	CGTCTC	2 cut(s)	198, 304
BsmFI	GGGAC	3 cut(s)	1810, 1985, 2279
BsmI	GAATGC	3 cut(s)	1099, 2185, 2644
BsnI	GGCC	3 cut(s)	263, 476, 1640
Bso31I	GGTCTC	1 cut(s)	2568
Bsp119I	TTCGAA	2 cut(s)	1091, 2479
Bsp1286I	GDGCHC	5 cut(s)	8, 423, 1962, 2309, 2715
Bsp13I	TCCGGA	1 cut(s)	642
Bsp143I	GATC	5 cut(s)	465, 570, 598, 1804, 1889
Bsp19I	CCATGG	2 cut(s)	564, 1692
Bsp68I	TCGCGA	1 cut(s)	1299
BspANI	GGCC	3 cut(s)	263, 476, 1640
BspCNI	CTCAG	6 cut(s)	148, 171, 257, 538, 1141, 2172
BspDI	ATCGAT	2 cut(s)	1888, 2356
BspEI	TCCGGA	1 cut(s)	642
BspFNI	CGCG	5 cut(s)	210, 382, 662, 704, 1299
BspPI	GGATC	2 cut(s)	578, 1884
BspQI	GCTCTTC	1 cut(s)	891
BspT104I	TTCGAA	2 cut(s)	1091, 2479
BspT107I	GGYRCC	1 cut(s)	1493
BspTI	CTTAAG	2 cut(s)	1160, 1610
BspTNI	GGTCTC	1 cut(s)	2568
BsrBI	CCGCTC	1 cut(s)	637
BsrDI	GCAATG	3 cut(s)	759, 1476, 2484
BsrFI	RCCGGY	2 cut(s)	458, 1496
BsrI	ACTGG	7 cut(s)	1574, 1783, 2223, 2420, 2604, 2677, 2685
BssAI	RCCGGY	2 cut(s)	458, 1496
BssECI	CCNNGG	8 cut(s)	267, 348, 471, 564, 993, 1641, 1692, 1827
BssMI	GATC	5 cut(s)	465, 570, 598, 1804, 1889
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	5 cut(s)	267, 348, 564, 993, 1692
Bst2UI	CCWGG	1 cut(s)	1047
Bst4CI	ACNGT	6 cut(s)	275, 1706, 1720, 1754, 2293, 2579
Bst6I	CTCTTC	8 cut(s)	307, 315, 873, 891, 917, 1356, 1871, 2224
BstACI	GRCGYC	1 cut(s)	60
BstAFI	CTTAAG	2 cut(s)	1160, 1610
BstAPI	GCANNNNNTGC	3 cut(s)	1538, 2189, 2345
BstBAI	YACGTR	1 cut(s)	1948
BstBI	TTCGAA	2 cut(s)	1091, 2479
BstC8I	GCNNGC	7 cut(s)	394, 453, 460, 657, 1116, 2012, 2436
BstDEI	CTNAG	7 cut(s)	135, 158, 244, 546, 1128, 1677, 2159
BstDSI	CCRYGG	2 cut(s)	564, 1692
BstF5I	GGATG	8 cut(s)	287, 805, 826, 877, 937, 1688, 1702, 2053
BstFNI	CGCG	5 cut(s)	210, 382, 662, 704, 1299
BstHHI	GCGC	3 cut(s)	210, 664, 704
BstKTI	GATC	5 cut(s)	468, 573, 601, 1807, 1892
BstMAI	GTCTC	7 cut(s)	198, 304, 1257, 1312, 2221, 2284, 2568
BstMBI	GATC	5 cut(s)	465, 570, 598, 1804, 1889
BstMCI	CGRYCG	2 cut(s)	264, 468
BstNI	CCWGG	1 cut(s)	1047
BstNSI	RCATGY	2 cut(s)	1915, 2368
BstSCI	CCNGG	1 cut(s)	1045
BstSFI	CTRYAG	1 cut(s)	2631
BstSNI	TACGTA	1 cut(s)	1948
BstUI	CGCG	5 cut(s)	210, 382, 662, 704, 1299
BstV2I	GAAGAC	1 cut(s)	210
BstXI	CCANNNNNNTGG	3 cut(s)	496, 1699, 2200
BstZI	CGGCCG	1 cut(s)	261
Bsu15I	ATCGAT	2 cut(s)	1888, 2356
BsuI	GTATCC	1 cut(s)	603
BsuRI	GGCC	3 cut(s)	263, 476, 1640
BsuTUI	ATCGAT	2 cut(s)	1888, 2356
BtgI	CCRYGG	2 cut(s)	564, 1692
BtrI	CACGTC	1 cut(s)	1270
BtsCI	GGATG	8 cut(s)	287, 805, 826, 877, 937, 1688, 1702, 2053
BtsI	GCAGTG	1 cut(s)	2143
BtsIMutI	CAGTG	5 cut(s)	1759, 1822, 2143, 2230, 2597
BtuMI	TCGCGA	1 cut(s)	1299
Cac8I	GCNNGC	7 cut(s)	394, 453, 460, 657, 1116, 2012, 2436
CaiI	CAGNNNCTG	3 cut(s)	1042, 2189, 2276
CfoI	GCGC	3 cut(s)	210, 664, 704
Cfr10I	RCCGGY	2 cut(s)	458, 1496
Cfr13I	GGNCC	5 cut(s)	271, 1638, 1972, 2293, 2748
ClaI	ATCGAT	2 cut(s)	1888, 2356
CseI	GACGC	2 cut(s)	68, 2626
Csp6I	GTAC	7 cut(s)	1276, 1494, 1768, 1945, 2163, 2327, 2408
CspAI	ACCGGT	1 cut(s)	1496
CviAII	CATG	7 cut(s)	565, 1285, 1693, 1901, 1912, 2301, 2365
CviQI	GTAC	7 cut(s)	1276, 1494, 1768, 1945, 2163, 2327, 2408
DdeI	CTNAG	7 cut(s)	135, 158, 244, 546, 1128, 1677, 2159
DpnI	GATC	5 cut(s)	467, 572, 600, 1806, 1891
DpnII	GATC	5 cut(s)	465, 570, 598, 1804, 1889
DraIII	CACNNNGTG	1 cut(s)	2666
EaeI	YGGCCR	1 cut(s)	261
EagI	CGGCCG	1 cut(s)	261
Eam1104I	CTCTTC	8 cut(s)	307, 315, 873, 891, 917, 1356, 1871, 2224
EarI	CTCTTC	8 cut(s)	307, 315, 873, 891, 917, 1356, 1871, 2224
EciI	GGCGGA	5 cut(s)	17, 106, 397, 722, 997
Ecl136II	GAGCTC	3 cut(s)	6, 1960, 2713
EclXI	CGGCCG	1 cut(s)	261
Eco105I	TACGTA	1 cut(s)	1948
Eco130I	CCWWGG	5 cut(s)	267, 348, 564, 993, 1692
Eco24I	GRGCYC	5 cut(s)	8, 423, 1962, 2309, 2715
Eco31I	GGTCTC	1 cut(s)	2568
Eco47I	GGWCC	4 cut(s)	271, 1972, 2293, 2748
Eco52I	CGGCCG	1 cut(s)	261
Eco53kI	GAGCTC	3 cut(s)	6, 1960, 2713
Eco57I	CTGAAG	1 cut(s)	353
EcoICRI	GAGCTC	3 cut(s)	6, 1960, 2713
EcoO109I	RGGNCCY	2 cut(s)	1972, 2748
EcoRII	CCWGG	1 cut(s)	1045
EcoT14I	CCWWGG	5 cut(s)	267, 348, 564, 993, 1692
EcoT38I	GRGCYC	5 cut(s)	8, 423, 1962, 2309, 2715
ErhI	CCWWGG	5 cut(s)	267, 348, 564, 993, 1692
Esp3I	CGTCTC	2 cut(s)	198, 304
FaeI	CATG	7 cut(s)	568, 1288, 1696, 1904, 1915, 2304, 2368
FalI	AAGNNNNNCTT	4 cut(s)	1328, 1360, 2394, 2426
FaqI	GGGAC	3 cut(s)	1810, 1985, 2279
FatI	CATG	7 cut(s)	564, 1284, 1692, 1900, 1911, 2300, 2364
FauI	CCCGC	2 cut(s)	460, 664
FauNDI	CATATG	1 cut(s)	1316
FbaI	TGATCA	2 cut(s)	598, 1804
FokI	GGATG	8 cut(s)	274, 812, 833, 884, 944, 1675, 1709, 2060
FriOI	GRGCYC	5 cut(s)	8, 423, 1962, 2309, 2715
FspBI	CTAG	9 cut(s)	389, 399, 942, 960, 969, 1583, 2426, 2733, 2745
GlaI	GCGC	3 cut(s)	209, 663, 703
GsaI	CCCAGC	4 cut(s)	1023, 2152, 2624, 2654
GsuI	CTGGAG	1 cut(s)	1976
HaeIII	GGCC	3 cut(s)	263, 476, 1640
HapII	CCGG	6 cut(s)	459, 643, 665, 731, 1497, 2042
HgaI	GACGC	2 cut(s)	68, 2626
HhaI	GCGC	3 cut(s)	210, 664, 704
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	7 cut(s)	568, 1288, 1696, 1904, 1915, 2304, 2368
Hin6I	GCGC	3 cut(s)	208, 662, 702
HinP1I	GCGC	3 cut(s)	208, 662, 702
HincII	GTYRAC	1 cut(s)	1652
HindII	GTYRAC	1 cut(s)	1652
HindIII	AAGCTT	4 cut(s)	1134, 1157, 2197, 2432
HinfI	GANTC	7 cut(s)	500, 548, 683, 1039, 1685, 1730, 1772
HpaII	CCGG	6 cut(s)	459, 643, 665, 731, 1497, 2042
Hpy166II	GTNNAC	6 cut(s)	481, 1652, 1702, 2039, 2143, 2678
Hpy188I	TCNGA	9 cut(s)	138, 372, 505, 589, 624, 1131, 1716, 2068, 2563
Hpy188III	TCNNGA	9 cut(s)	399, 552, 596, 643, 1244, 1298, 1963, 2234, 2426
Hpy8I	GTNNAC	6 cut(s)	481, 1652, 1702, 2039, 2143, 2678
HpyAV	CCTTC	5 cut(s)	81, 809, 1484, 1718, 2761
HpyCH4III	ACNGT	6 cut(s)	275, 1706, 1720, 1754, 2293, 2579
HpyCH4IV	ACGT	5 cut(s)	1269, 1381, 1390, 1618, 1947
HpyF3I	CTNAG	7 cut(s)	135, 158, 244, 546, 1128, 1677, 2159
HpySE526I	ACGT	5 cut(s)	1269, 1381, 1390, 1618, 1947
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	7 cut(s)	568, 1288, 1696, 1904, 1915, 2304, 2368
HspAI	GCGC	3 cut(s)	208, 662, 702
KflI	GGGWCCC	1 cut(s)	1972
Kpn2I	TCCGGA	1 cut(s)	642
KpnI	GGTACC	1 cut(s)	1497
KroI	GCCGGC	1 cut(s)	458
KroNI	GCCGGC	1 cut(s)	460
Ksp22I	TGATCA	2 cut(s)	598, 1804
Kzo9I	GATC	5 cut(s)	465, 570, 598, 1804, 1889
LguI	GCTCTTC	1 cut(s)	891
MaeI	CTAG	9 cut(s)	389, 399, 942, 960, 969, 1583, 2426, 2733, 2745
MaeII	ACGT	5 cut(s)	1269, 1381, 1390, 1618, 1947
MalI	GATC	5 cut(s)	467, 572, 600, 1806, 1891
MbiI	CCGCTC	1 cut(s)	637
MboI	GATC	5 cut(s)	465, 570, 598, 1804, 1889
MhlI	GDGCHC	5 cut(s)	8, 423, 1962, 2309, 2715
MlyI	GAGTC	5 cut(s)	494, 557, 1033, 1694, 1781
MmeI	TCCRAC	1 cut(s)	567
MroI	TCCGGA	1 cut(s)	642
MroNI	GCCGGC	1 cut(s)	458
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	6 cut(s)	447, 1161, 1611, 2442, 2499, 2760
MslI	CAYNNNNRTG	1 cut(s)	1697
MspA1I	CMGCKG	2 cut(s)	1457, 1850
MspCI	CTTAAG	2 cut(s)	1160, 1610
MspI	CCGG	6 cut(s)	459, 643, 665, 731, 1497, 2042
MspR9I	CCNGG	1 cut(s)	1047
Mva1269I	GAATGC	3 cut(s)	1099, 2185, 2644
MvaI	CCWGG	1 cut(s)	1047
MvnI	CGCG	5 cut(s)	210, 382, 662, 704, 1299
NaeI	GCCGGC	1 cut(s)	460
NcoI	CCATGG	2 cut(s)	564, 1692
NdeI	CATATG	1 cut(s)	1316
NdeII	GATC	5 cut(s)	465, 570, 598, 1804, 1889
NgoMIV	GCCGGC	1 cut(s)	458
NlaIII	CATG	7 cut(s)	568, 1288, 1696, 1904, 1915, 2304, 2368
NmeAIII	GCCGAG	4 cut(s)	442, 496, 1666, 1852
NmuCI	GTSAC	8 cut(s)	549, 1169, 1188, 1319, 1748, 1773, 2566, 2656
NruI	TCGCGA	1 cut(s)	1299
NspI	RCATGY	2 cut(s)	1915, 2368
NspV	TTCGAA	2 cut(s)	1091, 2479
PciI	ACATGT	1 cut(s)	1911
PciSI	GCTCTTC	1 cut(s)	891
PcsI	WCGNNNNNNNCGW	7 cut(s)	45, 48, 51, 54, 60, 474, 1387
PctI	GAATGC	3 cut(s)	1099, 2185, 2644
PdiI	GCCGGC	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	2 cut(s)	683, 1730
Pfl23II	CGTACG	1 cut(s)	1944
PflFI	GACNNNGTC	1 cut(s)	1304
PinAI	ACCGGT	1 cut(s)	1496
Ple19I	CGATCG	1 cut(s)	468
PleI	GAGTC	5 cut(s)	494, 556, 1033, 1693, 1780
PpsI	GAGTC	5 cut(s)	494, 556, 1033, 1693, 1780
Ppu21I	YACGTR	1 cut(s)	1948
PpuMI	RGGWCCY	2 cut(s)	1972, 2748
PscI	ACATGT	1 cut(s)	1911
PshBI	ATTAAT	1 cut(s)	2442
Psp124BI	GAGCTC	3 cut(s)	8, 1962, 2715
Psp5II	RGGWCCY	2 cut(s)	1972, 2748
Psp6I	CCWGG	1 cut(s)	1045
PspFI	CCCAGC	4 cut(s)	1019, 2148, 2620, 2650
PspGI	CCWGG	1 cut(s)	1045
PspLI	CGTACG	1 cut(s)	1944
PspPI	GGNCC	5 cut(s)	271, 1638, 1972, 2293, 2748
PspPPI	RGGWCCY	2 cut(s)	1972, 2748
PstNI	CAGNNNCTG	3 cut(s)	1042, 2189, 2276
PsyI	GACNNNGTC	1 cut(s)	1304
PvuI	CGATCG	1 cut(s)	468
PvuII	CAGCTG	2 cut(s)	1457, 1850
RruI	TCGCGA	1 cut(s)	1299
RsaI	GTAC	7 cut(s)	1277, 1495, 1769, 1946, 2164, 2328, 2409
RsaNI	GTAC	7 cut(s)	1276, 1494, 1768, 1945, 2163, 2327, 2408
RseI	CAYNNNNRTG	1 cut(s)	1697
SacI	GAGCTC	3 cut(s)	8, 1962, 2715
SapI	GCTCTTC	1 cut(s)	891
SaqAI	TTAA	6 cut(s)	447, 1161, 1611, 2442, 2499, 2760
Sau3AI	GATC	5 cut(s)	465, 570, 598, 1804, 1889
Sau96I	GGNCC	5 cut(s)	271, 1638, 1972, 2293, 2748
ScaI	AGTACT	1 cut(s)	2409
SchI	GAGTC	5 cut(s)	494, 557, 1033, 1694, 1781
ScrFI	CCNGG	1 cut(s)	1047
SduI	GDGCHC	5 cut(s)	8, 423, 1962, 2309, 2715
SfcI	CTRYAG	1 cut(s)	2631
SfuI	TTCGAA	2 cut(s)	1091, 2479
SinI	GGWCC	4 cut(s)	271, 1972, 2293, 2748
SmiMI	CAYNNNNRTG	1 cut(s)	1697
SmlI	CTYRAG	3 cut(s)	434, 1160, 1610
SmoI	CTYRAG	3 cut(s)	434, 1160, 1610
SnaBI	TACGTA	1 cut(s)	1948
SspI	AATATT	1 cut(s)	1835
SspMI	CTAG	9 cut(s)	389, 399, 942, 960, 969, 1583, 2426, 2733, 2745
SstI	GAGCTC	3 cut(s)	8, 1962, 2715
StyD4I	CCNGG	1 cut(s)	1045
StyI	CCWWGG	5 cut(s)	267, 348, 564, 993, 1692
TaaI	ACNGT	6 cut(s)	275, 1706, 1720, 1754, 2293, 2579
TaiI	ACGT	5 cut(s)	1272, 1384, 1393, 1621, 1950
TaqI	TCGA	9 cut(s)	39, 464, 573, 855, 1055, 1091, 1888, 2356, 2479
TatI	WGTACW	3 cut(s)	1275, 2162, 2407
TfiI	GAWTC	2 cut(s)	683, 1730
Tru1I	TTAA	6 cut(s)	447, 1161, 1611, 2442, 2499, 2760
Tru9I	TTAA	6 cut(s)	447, 1161, 1611, 2442, 2499, 2760
TscAI	CASTG	5 cut(s)	1759, 1822, 2150, 2230, 2604
TseFI	GTSAC	8 cut(s)	549, 1169, 1188, 1319, 1748, 1773, 2566, 2656
Tsp45I	GTSAC	8 cut(s)	549, 1169, 1188, 1319, 1748, 1773, 2566, 2656
TspGWI	ACGGA	7 cut(s)	286, 350, 498, 1188, 1932, 1970, 2222
TspRI	CASTG	5 cut(s)	1759, 1822, 2150, 2230, 2604
Tth111I	GACNNNGTC	1 cut(s)	1304
Vha464I	CTTAAG	2 cut(s)	1160, 1610
VpaK11BI	GGWCC	4 cut(s)	271, 1972, 2293, 2748
VspI	ATTAAT	1 cut(s)	2442
XapI	RAATTY	4 cut(s)	283, 1210, 1589, 2056
XbaI	TCTAGA	2 cut(s)	398, 2425
XceI	RCATGY	2 cut(s)	1915, 2368
XcmI	CCANNNNNNNNNTGG	3 cut(s)	274, 332, 1790
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	9 cut(s)	389, 399, 942, 960, 969, 1583, 2426, 2733, 2745
ZrmI	AGTACT	1 cut(s)	2409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.